data_4WX6 # _model_server_result.job_id D6feS0BL7I4-QQK14xmJYA _model_server_result.datetime_utc '2024-11-22 21:50:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4WX6 # _exptl.entry_id 4WX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.5 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-2-(3,5-dichlorophenyl)-2-(ethylamino)acetyl]-3-methyl-L-valyl-N-[3-(methylsulfonyl)propyl]glycinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WX6 _cell.length_a 41.733 _cell.length_b 41.733 _cell.length_c 193.552 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA Dimeric 2 author_and_software_defined_assembly 1 PISA Dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 B SG CYS 10 B CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf2 C SG CYS 104 C CYS 104 1_555 D SG CYS 10 D CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A SG CYS 122 A CYS 122 1_555 E C27 3VK . A 3VK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale2 C SG CYS 122 C CYS 122 1_555 F C27 3VK . C 3VK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? # _chem_comp.formula 'C22 H34 Cl2 N4 O5 S' _chem_comp.formula_weight 537.5 _chem_comp.id 3VK _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-2-(3,5-dichlorophenyl)-2-(ethylamino)acetyl]-3-methyl-L-valyl-N-[3-(methylsulfonyl)propyl]glycinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL7 C6 3VK sing 1 n n C6 C1 3VK doub 2 n y C6 C5 3VK sing 3 n y C34 C33 3VK sing 4 n n C1 C2 3VK sing 5 n y C5 C4 3VK doub 6 n y N11 C33 3VK sing 7 n n N11 C9 3VK sing 8 n n C2 CL8 3VK sing 9 n n C2 C3 3VK doub 10 n y C4 C3 3VK sing 11 n y C4 C9 3VK sing 12 n n C9 C10 3VK sing 13 n n O12 C10 3VK doub 14 n n C10 N13 3VK sing 15 n n N13 C14 3VK sing 16 n n C14 C15 3VK sing 17 n n C14 C18 3VK sing 18 n n C20 C18 3VK sing 19 n n O17 C15 3VK doub 20 n n C15 N16 3VK sing 21 n n C18 C21 3VK sing 22 n n C18 C19 3VK sing 23 n n N16 C22 3VK sing 24 n n C22 C23 3VK sing 25 n n O26 C23 3VK doub 26 n n C23 N24 3VK sing 27 n n N24 C25 3VK sing 28 n n C25 C27 3VK sing 29 n n C27 C28 3VK sing 30 n n C28 S29 3VK sing 31 n n S29 O32 3VK doub 32 n n S29 O31 3VK doub 33 n n S29 C30 3VK sing 34 n n C1 H1 3VK sing 35 n n C3 H2 3VK sing 36 n n C14 H3 3VK sing 37 n n C19 H4 3VK sing 38 n n C19 H5 3VK sing 39 n n C19 H6 3VK sing 40 n n C20 H7 3VK sing 41 n n C20 H8 3VK sing 42 n n C20 H9 3VK sing 43 n n C21 H10 3VK sing 44 n n C21 H11 3VK sing 45 n n C21 H12 3VK sing 46 n n C22 H13 3VK sing 47 n n C22 H14 3VK sing 48 n n C25 H15 3VK sing 49 n n C25 H16 3VK sing 50 n n C27 H17 3VK sing 51 n n C27 H18 3VK sing 52 n n C28 H19 3VK sing 53 n n C28 H20 3VK sing 54 n n C30 H21 3VK sing 55 n n C30 H22 3VK sing 56 n n C30 H23 3VK sing 57 n n C5 H24 3VK sing 58 n n C9 H25 3VK sing 59 n n N11 H26 3VK sing 60 n n N13 H28 3VK sing 61 n n N16 H29 3VK sing 62 n n N24 H30 3VK sing 63 n n C33 H31 3VK sing 64 n n C33 H32 3VK sing 65 n n C34 H33 3VK sing 66 n n C34 H34 3VK sing 67 n n C34 H35 3VK sing 68 n n # _atom_sites.entry_id 4WX6 _atom_sites.fract_transf_matrix[1][1] 0.023962 _atom_sites.fract_transf_matrix[1][2] 0.013834 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 3VK A 1 301 1 3VK LI1 . F 3 3VK C 1 301 1 3VK LI1 . G 4 HOH A 1 401 24 HOH HOH . G 4 HOH A 2 402 25 HOH HOH . G 4 HOH A 3 403 22 HOH HOH . G 4 HOH A 4 404 18 HOH HOH . G 4 HOH A 5 405 23 HOH HOH . G 4 HOH A 6 406 3 HOH HOH . G 4 HOH A 7 407 7 HOH HOH . G 4 HOH A 8 408 10 HOH HOH . G 4 HOH A 9 409 14 HOH HOH . G 4 HOH A 10 410 19 HOH HOH . G 4 HOH A 11 411 26 HOH HOH . H 4 HOH B 1 401 12 HOH HOH . I 4 HOH C 1 401 21 HOH HOH . I 4 HOH C 2 402 17 HOH HOH . I 4 HOH C 3 403 16 HOH HOH . I 4 HOH C 4 404 11 HOH HOH . I 4 HOH C 5 405 13 HOH HOH . I 4 HOH C 6 406 9 HOH HOH . I 4 HOH C 7 407 1 HOH HOH . I 4 HOH C 8 408 4 HOH HOH . I 4 HOH C 9 409 5 HOH HOH . I 4 HOH C 10 410 6 HOH HOH . I 4 HOH C 11 411 8 HOH HOH . I 4 HOH C 12 412 15 HOH HOH . I 4 HOH C 13 413 20 HOH HOH . I 4 HOH C 14 414 27 HOH HOH . I 4 HOH C 15 415 28 HOH HOH . J 4 HOH D 1 401 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3VK . . . F 3 28.183 37.307 -13.234 1 54.36 ? C1 3VK 301 C 1 HETATM 2 C C2 3VK . . . F 3 27.426 37.103 -14.387 1 54.43 ? C2 3VK 301 C 1 HETATM 3 C C3 3VK . . . F 3 27.225 35.812 -14.9 1 57.18 ? C3 3VK 301 C 1 HETATM 4 C C14 3VK . . . F 3 29.327 33.737 -18.334 1 39.63 ? C14 3VK 301 C 1 HETATM 5 C C15 3VK . . . F 3 29.507 35.136 -18.957 1 42.54 ? C15 3VK 301 C 1 HETATM 6 C C18 3VK . . . F 3 29.107 32.608 -19.421 1 45.27 ? C18 3VK 301 C 1 HETATM 7 C C19 3VK . . . F 3 30.443 32.09 -20.059 1 41.14 ? C19 3VK 301 C 1 HETATM 8 C C20 3VK . . . F 3 28.354 31.364 -18.805 1 45.29 ? C20 3VK 301 C 1 HETATM 9 C C21 3VK . . . F 3 28.275 33.172 -20.615 1 42.85 ? C21 3VK 301 C 1 HETATM 10 C C22 3VK . . . F 3 30.883 36.524 -20.415 1 36.73 ? C22 3VK 301 C 1 HETATM 11 C C23 3VK . . . F 3 32.008 36.335 -21.375 1 38.95 ? C23 3VK 301 C 1 HETATM 12 C C25 3VK . . . F 3 33.152 37.019 -23.337 1 36.19 ? C25 3VK 301 C 1 HETATM 13 C C27 3VK . . . F 3 33.772 38.409 -23.446 1 37.48 ? C27 3VK 301 C 1 HETATM 14 C C28 3VK . . . F 3 32.879 39.516 -24.02 1 36.48 ? C28 3VK 301 C 1 HETATM 15 C C30 3VK . . . F 3 32.481 38.481 -26.534 1 33.75 ? C30 3VK 301 C 1 HETATM 16 C C4 3VK . . . F 3 27.8 34.698 -14.271 1 51.43 ? C4 3VK 301 C 1 HETATM 17 C C5 3VK . . . F 3 28.582 34.911 -13.121 1 51.4 ? C5 3VK 301 C 1 HETATM 18 C C6 3VK . . . F 3 28.76 36.203 -12.614 1 51.87 ? C6 3VK 301 C 1 HETATM 19 CL CL7 3VK . . . F 3 29.72 36.505 -11.197 1 53.73 ? CL7 3VK 301 C 1 HETATM 20 CL CL8 3VK . . . F 3 26.709 38.473 -15.184 1 58.43 ? CL8 3VK 301 C 1 HETATM 21 C C9 3VK . . . F 3 27.614 33.3 -14.865 1 47.81 ? C9 3VK 301 C 1 HETATM 22 C C10 3VK . . . F 3 28.635 33.309 -15.982 1 42.05 ? C10 3VK 301 C 1 HETATM 23 N N11 3VK . . . F 3 27.93 32.265 -13.831 1 52.5 ? N11 3VK 301 C 1 HETATM 24 O O12 3VK . . . F 3 29.764 32.965 -15.69 1 37.51 ? O12 3VK 301 C 1 HETATM 25 N N13 3VK . . . F 3 28.309 33.715 -17.251 1 44.31 ? N13 3VK 301 C 1 HETATM 26 N N16 3VK . . . F 3 30.621 35.288 -19.727 1 36.4 ? N16 3VK 301 C 1 HETATM 27 O O17 3VK . . . F 3 28.678 36.062 -18.783 1 33.14 ? O17 3VK 301 C 1 HETATM 28 N N24 3VK . . . F 3 32.026 37.151 -22.444 1 33.95 ? N24 3VK 301 C 1 HETATM 29 O O26 3VK . . . F 3 32.87 35.479 -21.139 1 34.78 ? O26 3VK 301 C 1 HETATM 30 S S29 3VK . . . F 3 32.943 40.015 -25.708 1 33.64 ? S29 3VK 301 C 1 HETATM 31 O O31 3VK . . . F 3 34.378 40.203 -25.904 1 27.08 ? O31 3VK 301 C 1 HETATM 32 O O32 3VK . . . F 3 31.924 40.996 -26.05 1 33.31 ? O32 3VK 301 C 1 HETATM 33 C C33 3VK . . . F 3 27.653 30.827 -14.12 1 49.39 ? C33 3VK 301 C 1 HETATM 34 C C34 3VK . . . F 3 27.776 30.064 -12.762 1 51.5 ? C34 3VK 301 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #