data_4WX7
#
_model_server_result.job_id            TGISUnXIh0q9gAo_4WsTUw 
_model_server_result.datetime_utc      '2024-11-22 21:58:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    4WX7 
#
_exptl.entry_id    4WX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.342 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[2-(3,5-dichlorophenyl)-2-methylpropanoyl]-N-(2-{[(2Z)-2-iminoethyl]amino}-2-oxoethyl)-4-methoxybenzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WX7 
_cell.length_a            40.793 
_cell.length_b            40.793 
_cell.length_c            191.752 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA DIMERIC 2 author_and_software_defined_assembly 1 
PISA DIMERIC 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G 1 1 
C,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 B SG CYS 10 B CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 C SG CYS 104 C CYS 104 1_555 D SG CYS 10 D CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 A SG CYS 122 A CYS 122 1_555 E C30 3VJ . A 3VJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? 
covale ? covale2 C SG CYS 122 C CYS 122 1_555 F C30 3VJ . C 3VJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? 
#
_chem_comp.formula           'C22 H23 Cl2 N3 O4' 
_chem_comp.formula_weight    464.342 
_chem_comp.id                3VJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[2-(3,5-dichlorophenyl)-2-methylpropanoyl]-N-(2-{[(2Z)-2-iminoethyl]amino}-2-oxoethyl)-4-methoxybenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C30 3VJ doub 1 n n 
C30 C26 3VJ sing 2 n n 
C26 N25 3VJ sing 3 n n 
N25 C23 3VJ sing 4 n n 
C23 O24 3VJ doub 5 n n 
C23 C22 3VJ sing 6 n n 
C22 N20 3VJ sing 7 n n 
N20 C12 3VJ sing 8 n n 
C12 O21 3VJ doub 9 n n 
C12 C4 3VJ sing 10 n n 
C5 C6 3VJ doub 11 n y 
C5 C4 3VJ sing 12 n y 
C6 C1 3VJ sing 13 n y 
C4 C3 3VJ doub 14 n y 
C1 O11 3VJ sing 15 n n 
C1 C2 3VJ doub 16 n y 
C27 O11 3VJ sing 17 n n 
C3 C2 3VJ sing 18 n y 
C2 C7 3VJ sing 19 n n 
C28 C8 3VJ sing 20 n n 
CL1 C14 3VJ sing 21 n n 
C7 C8 3VJ sing 22 n n 
C7 O9 3VJ doub 23 n n 
C13 C14 3VJ doub 24 n y 
C13 C10 3VJ sing 25 n y 
C8 C10 3VJ sing 26 n n 
C8 C29 3VJ sing 27 n n 
C14 C15 3VJ sing 28 n y 
C10 C17 3VJ doub 29 n y 
C15 C16 3VJ doub 30 n y 
C17 C16 3VJ sing 31 n y 
C16 CL2 3VJ sing 32 n n 
C3 H1 3VJ sing 33 n n 
C13 H2 3VJ sing 34 n n 
C15 H3 3VJ sing 35 n n 
C17 H4 3VJ sing 36 n n 
C22 H5 3VJ sing 37 n n 
C22 H6 3VJ sing 38 n n 
C26 H7 3VJ sing 39 n n 
C26 H8 3VJ sing 40 n n 
C27 H9 3VJ sing 41 n n 
C27 H10 3VJ sing 42 n n 
C27 H11 3VJ sing 43 n n 
C28 H12 3VJ sing 44 n n 
C28 H13 3VJ sing 45 n n 
C28 H14 3VJ sing 46 n n 
C29 H15 3VJ sing 47 n n 
C29 H16 3VJ sing 48 n n 
C29 H17 3VJ sing 49 n n 
C30 H18 3VJ sing 50 n n 
C5 H19 3VJ sing 51 n n 
C6 H20 3VJ sing 52 n n 
N20 H21 3VJ sing 53 n n 
N25 H22 3VJ sing 54 n n 
N31 H23 3VJ sing 55 n n 
#
_atom_sites.entry_id                     4WX7 
_atom_sites.fract_transf_matrix[1][1]    0.024514 
_atom_sites.fract_transf_matrix[1][2]    0.014153 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 3VJ A 1 301 1 3VJ LI1 . 
F 3 3VJ C 1 301 1 3VJ LI1 . 
G 4 HOH A 1 401 9 HOH HOH . 
G 4 HOH A 2 402 14 HOH HOH . 
G 4 HOH A 3 403 1 HOH HOH . 
G 4 HOH A 4 404 10 HOH HOH . 
G 4 HOH A 5 405 2 HOH HOH . 
G 4 HOH A 6 406 4 HOH HOH . 
G 4 HOH A 7 407 11 HOH HOH . 
G 4 HOH A 8 408 15 HOH HOH . 
G 4 HOH A 9 409 17 HOH HOH . 
H 4 HOH C 1 401 7 HOH HOH . 
H 4 HOH C 2 402 12 HOH HOH . 
H 4 HOH C 3 403 3 HOH HOH . 
H 4 HOH C 4 404 6 HOH HOH . 
H 4 HOH C 5 405 8 HOH HOH . 
H 4 HOH C 6 406 13 HOH HOH . 
H 4 HOH C 7 407 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3VJ . . . F 3 20.335 43.718 17.03 1 25.38 ? C1 3VJ 301 C 1 
HETATM 2 C C2 3VJ . . . F 3 21.424 43.188 16.292 1 24.72 ? C2 3VJ 301 C 1 
HETATM 3 C C3 3VJ . . . F 3 22.655 42.959 16.933 1 23.18 ? C3 3VJ 301 C 1 
HETATM 4 C C12 3VJ . . . F 3 24.189 43.046 19.004 1 21.8 ? C12 3VJ 301 C 1 
HETATM 5 C C13 3VJ . . . F 3 23.075 39.891 14.688 1 28.16 ? C13 3VJ 301 C 1 
HETATM 6 C C14 3VJ . . . F 3 24.332 39.434 14.306 1 29.45 ? C14 3VJ 301 C 1 
HETATM 7 C C15 3VJ . . . F 3 25.01 39.981 13.2 1 29.15 ? C15 3VJ 301 C 1 
HETATM 8 C C16 3VJ . . . F 3 24.396 41.016 12.478 1 27.66 ? C16 3VJ 301 C 1 
HETATM 9 C C17 3VJ . . . F 3 23.138 41.456 12.862 1 27.42 ? C17 3VJ 301 C 1 
HETATM 10 C C22 3VJ . . . F 3 25.9 43.696 20.715 1 23.98 ? C22 3VJ 301 C 1 
HETATM 11 C C23 3VJ . . . F 3 25.907 44.758 21.793 1 25.63 ? C23 3VJ 301 C 1 
HETATM 12 C C26 3VJ . . . F 3 27.771 43.9 23.223 1 21.24 ? C26 3VJ 301 C 1 
HETATM 13 C C27 3VJ . . . F 3 17.924 44.51 17.079 1 21.26 ? C27 3VJ 301 C 1 
HETATM 14 C C28 3VJ . . . F 3 20.369 40.405 15.333 1 25.35 ? C28 3VJ 301 C 1 
HETATM 15 C C29 3VJ . . . F 3 20.242 41.444 13.008 1 27.05 ? C29 3VJ 301 C 1 
HETATM 16 C C30 3VJ . . . F 3 28.979 44.729 23.281 1 19.86 ? C30 3VJ 301 C 1 
HETATM 17 C C4 3VJ . . . F 3 22.848 43.264 18.294 1 22.36 ? C4 3VJ 301 C 1 
HETATM 18 C C5 3VJ . . . F 3 21.771 43.811 18.99 1 23.57 ? C5 3VJ 301 C 1 
HETATM 19 C C6 3VJ . . . F 3 20.532 44.041 18.396 1 23.74 ? C6 3VJ 301 C 1 
HETATM 20 C C7 3VJ . . . F 3 21.193 42.817 14.845 1 25.76 ? C7 3VJ 301 C 1 
HETATM 21 C C8 3VJ . . . F 3 21.075 41.4 14.333 1 27.41 ? C8 3VJ 301 C 1 
HETATM 22 O O9 3VJ . . . F 3 21.079 43.673 13.981 1 26.95 ? O9 3VJ 301 C 1 
HETATM 23 C C10 3VJ . . . F 3 22.471 40.906 13.962 1 27.25 ? C10 3VJ 301 C 1 
HETATM 24 O O11 3VJ . . . F 3 19.074 43.932 16.403 1 23.52 ? O11 3VJ 301 C 1 
HETATM 25 CL CL1 3VJ . . . F 3 25.028 38.172 15.282 1 32.64 ? CL1 3VJ 301 C 1 
HETATM 26 CL CL2 3VJ . . . F 3 25.138 41.761 11.077 1 25.53 ? CL2 3VJ 301 C 1 
HETATM 27 N N20 3VJ . . . F 3 24.613 43.864 19.988 1 22.49 ? N20 3VJ 301 C 1 
HETATM 28 O O21 3VJ . . . F 3 24.887 42.11 18.686 1 20.06 ? O21 3VJ 301 C 1 
HETATM 29 O O24 3VJ . . . F 3 25.067 45.636 21.662 1 31.24 ? O24 3VJ 301 C 1 
HETATM 30 N N25 3VJ . . . F 3 26.694 44.806 22.902 1 23.65 ? N25 3VJ 301 C 1 
HETATM 31 N N31 3VJ . . . F 3 29.523 44.936 24.35 1 18.34 ? N31 3VJ 301 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           58 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#