data_4WXI # _model_server_result.job_id jcLod-Zs0Ppp-I2zxA2EFw _model_server_result.datetime_utc '2025-05-24 13:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4WXI # _exptl.entry_id 4WXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WXI _cell.length_a 79 _cell.length_b 79 _cell.length_c 106.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 154 n n C1 C2 EDO sing 155 n n C1 H11 EDO sing 156 n n C1 H12 EDO sing 157 n n O1 HO1 EDO sing 158 n n C2 O2 EDO sing 159 n n C2 H21 EDO sing 160 n n C2 H22 EDO sing 161 n n O2 HO2 EDO sing 162 n n # _atom_sites.entry_id 4WXI _atom_sites.fract_transf_matrix[1][1] 0.012658 _atom_sites.fract_transf_matrix[1][2] 0.007308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3VM A 1 301 1 3VM LG1 . C 3 SO4 A 1 302 2 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 4 EDO A 1 304 4 EDO EDO . F 4 EDO A 1 305 7 EDO EDO . G 5 HOH A 1 401 134 HOH HOH . G 5 HOH A 2 402 118 HOH HOH . G 5 HOH A 3 403 115 HOH HOH . G 5 HOH A 4 404 14 HOH HOH . G 5 HOH A 5 405 122 HOH HOH . G 5 HOH A 6 406 125 HOH HOH . G 5 HOH A 7 407 35 HOH HOH . G 5 HOH A 8 408 124 HOH HOH . G 5 HOH A 9 409 121 HOH HOH . G 5 HOH A 10 410 1 HOH HOH . G 5 HOH A 11 411 97 HOH HOH . G 5 HOH A 12 412 92 HOH HOH . G 5 HOH A 13 413 51 HOH HOH . G 5 HOH A 14 414 117 HOH HOH . G 5 HOH A 15 415 49 HOH HOH . G 5 HOH A 16 416 33 HOH HOH . G 5 HOH A 17 417 87 HOH HOH . G 5 HOH A 18 418 11 HOH HOH . G 5 HOH A 19 419 59 HOH HOH . G 5 HOH A 20 420 40 HOH HOH . G 5 HOH A 21 421 69 HOH HOH . G 5 HOH A 22 422 78 HOH HOH . G 5 HOH A 23 423 23 HOH HOH . G 5 HOH A 24 424 65 HOH HOH . G 5 HOH A 25 425 6 HOH HOH . G 5 HOH A 26 426 71 HOH HOH . G 5 HOH A 27 427 95 HOH HOH . G 5 HOH A 28 428 106 HOH HOH . G 5 HOH A 29 429 20 HOH HOH . G 5 HOH A 30 430 21 HOH HOH . G 5 HOH A 31 431 75 HOH HOH . G 5 HOH A 32 432 68 HOH HOH . G 5 HOH A 33 433 110 HOH HOH . G 5 HOH A 34 434 54 HOH HOH . G 5 HOH A 35 435 28 HOH HOH . G 5 HOH A 36 436 109 HOH HOH . G 5 HOH A 37 437 99 HOH HOH . G 5 HOH A 38 438 26 HOH HOH . G 5 HOH A 39 439 2 HOH HOH . G 5 HOH A 40 440 3 HOH HOH . G 5 HOH A 41 441 4 HOH HOH . G 5 HOH A 42 442 5 HOH HOH . G 5 HOH A 43 443 7 HOH HOH . G 5 HOH A 44 444 8 HOH HOH . G 5 HOH A 45 445 9 HOH HOH . G 5 HOH A 46 446 10 HOH HOH . G 5 HOH A 47 447 12 HOH HOH . G 5 HOH A 48 448 13 HOH HOH . G 5 HOH A 49 449 15 HOH HOH . G 5 HOH A 50 450 16 HOH HOH . G 5 HOH A 51 451 17 HOH HOH . G 5 HOH A 52 452 18 HOH HOH . G 5 HOH A 53 453 19 HOH HOH . G 5 HOH A 54 454 22 HOH HOH . G 5 HOH A 55 455 24 HOH HOH . G 5 HOH A 56 456 25 HOH HOH . G 5 HOH A 57 457 27 HOH HOH . G 5 HOH A 58 458 29 HOH HOH . G 5 HOH A 59 459 30 HOH HOH . G 5 HOH A 60 460 31 HOH HOH . G 5 HOH A 61 461 32 HOH HOH . G 5 HOH A 62 462 34 HOH HOH . G 5 HOH A 63 463 36 HOH HOH . G 5 HOH A 64 464 37 HOH HOH . G 5 HOH A 65 465 38 HOH HOH . G 5 HOH A 66 466 39 HOH HOH . G 5 HOH A 67 467 41 HOH HOH . G 5 HOH A 68 468 42 HOH HOH . G 5 HOH A 69 469 43 HOH HOH . G 5 HOH A 70 470 44 HOH HOH . G 5 HOH A 71 471 45 HOH HOH . G 5 HOH A 72 472 46 HOH HOH . G 5 HOH A 73 473 47 HOH HOH . G 5 HOH A 74 474 48 HOH HOH . G 5 HOH A 75 475 50 HOH HOH . G 5 HOH A 76 476 52 HOH HOH . G 5 HOH A 77 477 53 HOH HOH . G 5 HOH A 78 478 55 HOH HOH . G 5 HOH A 79 479 56 HOH HOH . G 5 HOH A 80 480 57 HOH HOH . G 5 HOH A 81 481 58 HOH HOH . G 5 HOH A 82 482 60 HOH HOH . G 5 HOH A 83 483 61 HOH HOH . G 5 HOH A 84 484 62 HOH HOH . G 5 HOH A 85 485 63 HOH HOH . G 5 HOH A 86 486 64 HOH HOH . G 5 HOH A 87 487 66 HOH HOH . G 5 HOH A 88 488 67 HOH HOH . G 5 HOH A 89 489 70 HOH HOH . G 5 HOH A 90 490 72 HOH HOH . G 5 HOH A 91 491 73 HOH HOH . G 5 HOH A 92 492 74 HOH HOH . G 5 HOH A 93 493 76 HOH HOH . G 5 HOH A 94 494 77 HOH HOH . G 5 HOH A 95 495 79 HOH HOH . G 5 HOH A 96 496 80 HOH HOH . G 5 HOH A 97 497 81 HOH HOH . G 5 HOH A 98 498 82 HOH HOH . G 5 HOH A 99 499 83 HOH HOH . G 5 HOH A 100 500 84 HOH HOH . G 5 HOH A 101 501 85 HOH HOH . G 5 HOH A 102 502 86 HOH HOH . G 5 HOH A 103 503 88 HOH HOH . G 5 HOH A 104 504 89 HOH HOH . G 5 HOH A 105 505 90 HOH HOH . G 5 HOH A 106 506 91 HOH HOH . G 5 HOH A 107 507 93 HOH HOH . G 5 HOH A 108 508 94 HOH HOH . G 5 HOH A 109 509 96 HOH HOH . G 5 HOH A 110 510 98 HOH HOH . G 5 HOH A 111 511 100 HOH HOH . G 5 HOH A 112 512 101 HOH HOH . G 5 HOH A 113 513 102 HOH HOH . G 5 HOH A 114 514 103 HOH HOH . G 5 HOH A 115 515 104 HOH HOH . G 5 HOH A 116 516 105 HOH HOH . G 5 HOH A 117 517 107 HOH HOH . G 5 HOH A 118 518 108 HOH HOH . G 5 HOH A 119 519 111 HOH HOH . G 5 HOH A 120 520 112 HOH HOH . G 5 HOH A 121 521 113 HOH HOH . G 5 HOH A 122 522 114 HOH HOH . G 5 HOH A 123 523 116 HOH HOH . G 5 HOH A 124 524 119 HOH HOH . G 5 HOH A 125 525 120 HOH HOH . G 5 HOH A 126 526 123 HOH HOH . G 5 HOH A 127 527 126 HOH HOH . G 5 HOH A 128 528 127 HOH HOH . G 5 HOH A 129 529 128 HOH HOH . G 5 HOH A 130 530 129 HOH HOH . G 5 HOH A 131 531 130 HOH HOH . G 5 HOH A 132 532 131 HOH HOH . G 5 HOH A 133 533 132 HOH HOH . G 5 HOH A 134 534 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 47.976 -10.051 53.104 1 27.06 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 4 47.011 -10.831 53.834 1 32.04 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 4 48.411 -10.735 51.819 1 21.44 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 4 48.627 -12.106 52.145 1 23.42 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #