data_4WXL
#
_model_server_result.job_id            i_QVz8kTrtXjN5PjFS4n_Q 
_model_server_result.datetime_utc      '2024-10-19 04:49:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wxl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4WXL 
#
_exptl.entry_id    4WXL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              385.498 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ACTINONIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.99 
_cell.angle_gamma         90 
_cell.entry_id            4WXL 
_cell.length_a            41.201 
_cell.length_b            79.85 
_cell.length_c            98.168 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WXL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 91 A CYS 91 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc2 A NE2 HIS 133 A HIS 133 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc3 A NE2 HIS 137 A HIS 137 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc4 E NI NI . A NI 201 1_555 F O2 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
metalc ? metalc5 E NI NI . A NI 201 1_555 F O4 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc6 E NI NI . A NI 201 1_555 F N1 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc7 B SG CYS 91 B CYS 91 1_555 G NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc8 B NE2 HIS 133 B HIS 133 1_555 G NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc9 B NE2 HIS 137 B HIS 137 1_555 G NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc10 G NI NI . B NI 201 1_555 H N1 BB2 . B BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc11 G NI NI . B NI 201 1_555 H O2 BB2 . B BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
metalc ? metalc12 C SG CYS 91 C CYS 91 1_555 I NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc13 C NE2 HIS 133 C HIS 133 1_555 I NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc14 C NE2 HIS 137 C HIS 137 1_555 I NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc15 I NI NI . C NI 201 1_555 J N1 BB2 . C BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc16 I NI NI . C NI 201 1_555 J O4 BB2 . C BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc17 I NI NI . C NI 201 1_555 J O2 BB2 . C BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
metalc ? metalc18 D SG CYS 91 D CYS 91 1_555 K NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc19 D NE2 HIS 133 D HIS 133 1_555 K NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc20 D NE2 HIS 137 D HIS 137 1_555 K NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc21 K NI NI . D NI 201 1_555 L O4 BB2 . D BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc22 K NI NI . D NI 201 1_555 L N1 BB2 . D BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc23 K NI NI . D NI 201 1_555 L O2 BB2 . D BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
#
_chem_comp.formula           'C19 H35 N3 O5' 
_chem_comp.formula_weight    385.498 
_chem_comp.id                BB2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ACTINONIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C3 BB2 sing 70 n n 
C5 C6 BB2 sing 71 n n 
C5 H51 BB2 sing 72 n n 
C5 H52 BB2 sing 73 n n 
C3 O4 BB2 doub 74 n n 
C3 N1 BB2 sing 75 n n 
N1 O2 BB2 sing 76 n n 
N1 HN1 BB2 sing 77 n n 
O2 HO2 BB2 sing 78 n n 
C6 C12 BB2 sing 79 n n 
C6 C7 BB2 sing 80 n n 
C6 H6 BB2 sing 81 n n 
C12 O13 BB2 doub 82 n n 
C12 N14 BB2 sing 83 n n 
C7 C8 BB2 sing 84 n n 
C7 H71 BB2 sing 85 n n 
C7 H72 BB2 sing 86 n n 
C8 C9 BB2 sing 87 n n 
C8 H81 BB2 sing 88 n n 
C8 H82 BB2 sing 89 n n 
C9 C10 BB2 sing 90 n n 
C9 H91 BB2 sing 91 n n 
C9 H92 BB2 sing 92 n n 
C10 C11 BB2 sing 93 n n 
C10 H101 BB2 sing 94 n n 
C10 H102 BB2 sing 95 n n 
C11 H111 BB2 sing 96 n n 
C11 H112 BB2 sing 97 n n 
C11 H113 BB2 sing 98 n n 
N14 C15 BB2 sing 99 n n 
N14 H14 BB2 sing 100 n n 
C15 C16 BB2 sing 101 n n 
C15 C19 BB2 sing 102 n n 
C15 H15 BB2 sing 103 n n 
C16 C18 BB2 sing 104 n n 
C16 C17 BB2 sing 105 n n 
C16 H16 BB2 sing 106 n n 
C18 H181 BB2 sing 107 n n 
C18 H182 BB2 sing 108 n n 
C18 H183 BB2 sing 109 n n 
C17 H171 BB2 sing 110 n n 
C17 H172 BB2 sing 111 n n 
C17 H173 BB2 sing 112 n n 
C19 O20 BB2 doub 113 n n 
C19 N21 BB2 sing 114 n n 
N21 C22 BB2 sing 115 n n 
N21 C23 BB2 sing 116 n n 
C22 C25 BB2 sing 117 n n 
C22 C26 BB2 sing 118 n n 
C22 H22 BB2 sing 119 n n 
C23 C24 BB2 sing 120 n n 
C23 H231 BB2 sing 121 n n 
C23 H232 BB2 sing 122 n n 
C24 C25 BB2 sing 123 n n 
C24 H241 BB2 sing 124 n n 
C24 H242 BB2 sing 125 n n 
C25 H251 BB2 sing 126 n n 
C25 H252 BB2 sing 127 n n 
C26 O27 BB2 sing 128 n n 
C26 H261 BB2 sing 129 n n 
C26 H262 BB2 sing 130 n n 
O27 H27 BB2 sing 131 n n 
#
_atom_sites.entry_id                     4WXL 
_atom_sites.fract_transf_matrix[1][1]    0.024271 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003406 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010286 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NI A 1 201 170 NI NI . 
F 3 BB2 A 1 202 1001 BB2 BB2 . 
G 2 NI B 1 201 170 NI NI . 
H 3 BB2 B 1 202 1001 BB2 BB2 . 
I 2 NI C 1 201 170 NI NI . 
J 3 BB2 C 1 202 1001 BB2 BB2 . 
K 2 NI D 1 201 170 NI NI . 
L 3 BB2 D 1 202 1001 BB2 BB2 . 
M 4 HOH A 1 301 84 HOH HOH . 
M 4 HOH A 2 302 76 HOH HOH . 
M 4 HOH A 3 303 2 HOH HOH . 
M 4 HOH A 4 304 6 HOH HOH . 
M 4 HOH A 5 305 7 HOH HOH . 
M 4 HOH A 6 306 11 HOH HOH . 
M 4 HOH A 7 307 17 HOH HOH . 
M 4 HOH A 8 308 21 HOH HOH . 
M 4 HOH A 9 309 26 HOH HOH . 
M 4 HOH A 10 310 28 HOH HOH . 
M 4 HOH A 11 311 29 HOH HOH . 
M 4 HOH A 12 312 34 HOH HOH . 
M 4 HOH A 13 313 38 HOH HOH . 
M 4 HOH A 14 314 51 HOH HOH . 
M 4 HOH A 15 315 52 HOH HOH . 
M 4 HOH A 16 316 53 HOH HOH . 
M 4 HOH A 17 317 64 HOH HOH . 
M 4 HOH A 18 318 65 HOH HOH . 
M 4 HOH A 19 319 66 HOH HOH . 
M 4 HOH A 20 320 77 HOH HOH . 
M 4 HOH A 21 321 79 HOH HOH . 
M 4 HOH A 22 322 92 HOH HOH . 
N 4 HOH B 1 301 57 HOH HOH . 
N 4 HOH B 2 302 86 HOH HOH . 
N 4 HOH B 3 303 40 HOH HOH . 
N 4 HOH B 4 304 16 HOH HOH . 
N 4 HOH B 5 305 74 HOH HOH . 
N 4 HOH B 6 306 1 HOH HOH . 
N 4 HOH B 7 307 10 HOH HOH . 
N 4 HOH B 8 308 14 HOH HOH . 
N 4 HOH B 9 309 19 HOH HOH . 
N 4 HOH B 10 310 23 HOH HOH . 
N 4 HOH B 11 311 30 HOH HOH . 
N 4 HOH B 12 312 59 HOH HOH . 
N 4 HOH B 13 313 60 HOH HOH . 
N 4 HOH B 14 314 80 HOH HOH . 
N 4 HOH B 15 315 87 HOH HOH . 
N 4 HOH B 16 316 88 HOH HOH . 
N 4 HOH B 17 317 89 HOH HOH . 
N 4 HOH B 18 318 91 HOH HOH . 
O 4 HOH C 1 301 49 HOH HOH . 
O 4 HOH C 2 302 4 HOH HOH . 
O 4 HOH C 3 303 9 HOH HOH . 
O 4 HOH C 4 304 32 HOH HOH . 
O 4 HOH C 5 305 44 HOH HOH . 
O 4 HOH C 6 306 47 HOH HOH . 
O 4 HOH C 7 307 48 HOH HOH . 
O 4 HOH C 8 308 50 HOH HOH . 
O 4 HOH C 9 309 61 HOH HOH . 
O 4 HOH C 10 310 62 HOH HOH . 
O 4 HOH C 11 311 63 HOH HOH . 
O 4 HOH C 12 312 78 HOH HOH . 
O 4 HOH C 13 313 81 HOH HOH . 
O 4 HOH C 14 314 82 HOH HOH . 
O 4 HOH C 15 315 83 HOH HOH . 
P 4 HOH D 1 301 73 HOH HOH . 
P 4 HOH D 2 302 5 HOH HOH . 
P 4 HOH D 3 303 31 HOH HOH . 
P 4 HOH D 4 304 55 HOH HOH . 
P 4 HOH D 5 305 72 HOH HOH . 
P 4 HOH D 6 306 18 HOH HOH . 
P 4 HOH D 7 307 20 HOH HOH . 
P 4 HOH D 8 308 22 HOH HOH . 
P 4 HOH D 9 309 25 HOH HOH . 
P 4 HOH D 10 310 36 HOH HOH . 
P 4 HOH D 11 311 41 HOH HOH . 
P 4 HOH D 12 312 43 HOH HOH . 
P 4 HOH D 13 313 46 HOH HOH . 
P 4 HOH D 14 314 67 HOH HOH . 
P 4 HOH D 15 315 68 HOH HOH . 
P 4 HOH D 16 316 69 HOH HOH . 
P 4 HOH D 17 317 70 HOH HOH . 
P 4 HOH D 18 318 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 BB2 . . . F 3 -21.573 36.539 71.104 1 70.88 ? C5 BB2 202 A 1 
HETATM 2 C C3 BB2 . . . F 3 -21.991 36.077 72.495 1 68.43 ? C3 BB2 202 A 1 
HETATM 3 O O4 BB2 . . . F 3 -21.809 34.907 72.83 1 69.21 ? O4 BB2 202 A 1 
HETATM 4 N N1 BB2 . . . F 3 -22.563 37.001 73.298 1 53.86 ? N1 BB2 202 A 1 
HETATM 5 O O2 BB2 . . . F 3 -23.037 36.654 74.544 1 41.25 ? O2 BB2 202 A 1 
HETATM 6 C C6 BB2 . . . F 3 -22.723 36.475 70.088 1 69.67 ? C6 BB2 202 A 1 
HETATM 7 C C12 BB2 . . . F 3 -22.167 36.454 68.678 1 76 ? C12 BB2 202 A 1 
HETATM 8 O O13 BB2 . . . F 3 -21.158 37.1 68.407 1 79.54 ? O13 BB2 202 A 1 
HETATM 9 C C7 BB2 . . . F 3 -23.662 37.655 70.289 1 64.5 ? C7 BB2 202 A 1 
HETATM 10 C C8 BB2 . . . F 3 -25.004 37.366 69.673 1 60.7 ? C8 BB2 202 A 1 
HETATM 11 C C9 BB2 . . . F 3 -25.467 38.636 69.014 1 62.34 ? C9 BB2 202 A 1 
HETATM 12 C C10 BB2 . . . F 3 -26.726 38.413 68.231 1 63.36 ? C10 BB2 202 A 1 
HETATM 13 C C11 BB2 . . . F 3 -26.512 37.239 67.308 1 66.98 ? C11 BB2 202 A 1 
HETATM 14 N N14 BB2 . . . F 3 -22.795 35.624 67.832 1 78.3 ? N14 BB2 202 A 1 
HETATM 15 C C15 BB2 . . . F 3 -22.301 35.176 66.544 1 77.93 ? C15 BB2 202 A 1 
HETATM 16 C C16 BB2 . . . F 3 -21.312 34.012 66.81 1 75.36 ? C16 BB2 202 A 1 
HETATM 17 C C18 BB2 . . . F 3 -21.375 32.804 65.872 1 73.21 ? C18 BB2 202 A 1 
HETATM 18 C C17 BB2 . . . F 3 -19.867 34.481 66.818 1 75.04 ? C17 BB2 202 A 1 
HETATM 19 C C19 BB2 . . . F 3 -23.525 34.757 65.782 1 84.81 ? C19 BB2 202 A 1 
HETATM 20 O O20 BB2 . . . F 3 -23.889 33.599 65.887 1 98.29 ? O20 BB2 202 A 1 
HETATM 21 N N21 BB2 . . . F 3 -24.211 35.628 65.026 1 90.75 ? N21 BB2 202 A 1 
HETATM 22 C C22 BB2 . . . F 3 -25.679 35.559 64.862 1 91.5 ? C22 BB2 202 A 1 
HETATM 23 C C23 BB2 . . . F 3 -23.66 36.686 64.194 1 89.05 ? C23 BB2 202 A 1 
HETATM 24 C C24 BB2 . . . F 3 -24.832 37.313 63.446 1 83.96 ? C24 BB2 202 A 1 
HETATM 25 C C25 BB2 . . . F 3 -26.098 36.798 64.066 1 84.41 ? C25 BB2 202 A 1 
HETATM 26 C C26 BB2 . . . F 3 -25.997 34.31 64.045 1 93.8 ? C26 BB2 202 A 1 
HETATM 27 O O27 BB2 . . . F 3 -26.968 34.615 63.047 1 92.04 ? O27 BB2 202 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#