data_4WY2 # _model_server_result.job_id Ly60-uz-sg7Z4l2yDAmxXQ _model_server_result.datetime_utc '2024-11-18 13:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4WY2 # _exptl.entry_id 4WY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WY2 _cell.length_a 107.877 _cell.length_b 107.877 _cell.length_c 74.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4WY2 _atom_sites.fract_transf_matrix[1][1] 0.00927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U20 A 1 401 1 U20 U20 . C 3 GOL A 1 402 2 GOL GOL . D 4 CL A 1 403 1 CL CL . E 3 GOL A 1 404 1 GOL GOL . F 5 SO4 A 1 405 1 SO4 SO4 . G 6 HOH A 1 501 268 HOH HOH . G 6 HOH A 2 502 68 HOH HOH . G 6 HOH A 3 503 13 HOH HOH . G 6 HOH A 4 504 295 HOH HOH . G 6 HOH A 5 505 269 HOH HOH . G 6 HOH A 6 506 75 HOH HOH . G 6 HOH A 7 507 282 HOH HOH . G 6 HOH A 8 508 77 HOH HOH . G 6 HOH A 9 509 139 HOH HOH . G 6 HOH A 10 510 17 HOH HOH . G 6 HOH A 11 511 85 HOH HOH . G 6 HOH A 12 512 285 HOH HOH . G 6 HOH A 13 513 21 HOH HOH . G 6 HOH A 14 514 4 HOH HOH . G 6 HOH A 15 515 65 HOH HOH . G 6 HOH A 16 516 30 HOH HOH . G 6 HOH A 17 517 145 HOH HOH . G 6 HOH A 18 518 263 HOH HOH . G 6 HOH A 19 519 82 HOH HOH . G 6 HOH A 20 520 234 HOH HOH . G 6 HOH A 21 521 15 HOH HOH . G 6 HOH A 22 522 293 HOH HOH . G 6 HOH A 23 523 110 HOH HOH . G 6 HOH A 24 524 86 HOH HOH . G 6 HOH A 25 525 58 HOH HOH . G 6 HOH A 26 526 137 HOH HOH . G 6 HOH A 27 527 40 HOH HOH . G 6 HOH A 28 528 60 HOH HOH . G 6 HOH A 29 529 131 HOH HOH . G 6 HOH A 30 530 107 HOH HOH . G 6 HOH A 31 531 84 HOH HOH . G 6 HOH A 32 532 56 HOH HOH . G 6 HOH A 33 533 314 HOH HOH . G 6 HOH A 34 534 7 HOH HOH . G 6 HOH A 35 535 9 HOH HOH . G 6 HOH A 36 536 74 HOH HOH . G 6 HOH A 37 537 46 HOH HOH . G 6 HOH A 38 538 320 HOH HOH . G 6 HOH A 39 539 79 HOH HOH . G 6 HOH A 40 540 132 HOH HOH . G 6 HOH A 41 541 48 HOH HOH . G 6 HOH A 42 542 327 HOH HOH . G 6 HOH A 43 543 286 HOH HOH . G 6 HOH A 44 544 5 HOH HOH . G 6 HOH A 45 545 227 HOH HOH . G 6 HOH A 46 546 267 HOH HOH . G 6 HOH A 47 547 67 HOH HOH . G 6 HOH A 48 548 311 HOH HOH . G 6 HOH A 49 549 283 HOH HOH . G 6 HOH A 50 550 215 HOH HOH . G 6 HOH A 51 551 49 HOH HOH . G 6 HOH A 52 552 193 HOH HOH . G 6 HOH A 53 553 34 HOH HOH . G 6 HOH A 54 554 64 HOH HOH . G 6 HOH A 55 555 23 HOH HOH . G 6 HOH A 56 556 180 HOH HOH . G 6 HOH A 57 557 29 HOH HOH . G 6 HOH A 58 558 10 HOH HOH . G 6 HOH A 59 559 27 HOH HOH . G 6 HOH A 60 560 45 HOH HOH . G 6 HOH A 61 561 226 HOH HOH . G 6 HOH A 62 562 24 HOH HOH . G 6 HOH A 63 563 270 HOH HOH . G 6 HOH A 64 564 214 HOH HOH . G 6 HOH A 65 565 179 HOH HOH . G 6 HOH A 66 566 2 HOH HOH . G 6 HOH A 67 567 90 HOH HOH . G 6 HOH A 68 568 113 HOH HOH . G 6 HOH A 69 569 243 HOH HOH . G 6 HOH A 70 570 297 HOH HOH . G 6 HOH A 71 571 133 HOH HOH . G 6 HOH A 72 572 253 HOH HOH . G 6 HOH A 73 573 315 HOH HOH . G 6 HOH A 74 574 244 HOH HOH . G 6 HOH A 75 575 129 HOH HOH . G 6 HOH A 76 576 287 HOH HOH . G 6 HOH A 77 577 217 HOH HOH . G 6 HOH A 78 578 182 HOH HOH . G 6 HOH A 79 579 284 HOH HOH . G 6 HOH A 80 580 230 HOH HOH . G 6 HOH A 81 581 169 HOH HOH . G 6 HOH A 82 582 290 HOH HOH . G 6 HOH A 83 583 205 HOH HOH . G 6 HOH A 84 584 294 HOH HOH . G 6 HOH A 85 585 300 HOH HOH . G 6 HOH A 86 586 242 HOH HOH . G 6 HOH A 87 587 108 HOH HOH . G 6 HOH A 88 588 109 HOH HOH . G 6 HOH A 89 589 316 HOH HOH . G 6 HOH A 90 590 88 HOH HOH . G 6 HOH A 91 591 296 HOH HOH . G 6 HOH A 92 592 136 HOH HOH . G 6 HOH A 93 593 55 HOH HOH . G 6 HOH A 94 594 281 HOH HOH . G 6 HOH A 95 595 240 HOH HOH . G 6 HOH A 96 596 135 HOH HOH . G 6 HOH A 97 597 325 HOH HOH . G 6 HOH A 98 598 255 HOH HOH . G 6 HOH A 99 599 181 HOH HOH . G 6 HOH A 100 600 134 HOH HOH . G 6 HOH A 101 601 1 HOH HOH . G 6 HOH A 102 602 3 HOH HOH . G 6 HOH A 103 603 6 HOH HOH . G 6 HOH A 104 604 8 HOH HOH . G 6 HOH A 105 605 11 HOH HOH . G 6 HOH A 106 606 12 HOH HOH . G 6 HOH A 107 607 14 HOH HOH . G 6 HOH A 108 608 16 HOH HOH . G 6 HOH A 109 609 18 HOH HOH . G 6 HOH A 110 610 19 HOH HOH . G 6 HOH A 111 611 20 HOH HOH . G 6 HOH A 112 612 22 HOH HOH . G 6 HOH A 113 613 25 HOH HOH . G 6 HOH A 114 614 26 HOH HOH . G 6 HOH A 115 615 28 HOH HOH . G 6 HOH A 116 616 31 HOH HOH . G 6 HOH A 117 617 32 HOH HOH . G 6 HOH A 118 618 33 HOH HOH . G 6 HOH A 119 619 36 HOH HOH . G 6 HOH A 120 620 37 HOH HOH . G 6 HOH A 121 621 38 HOH HOH . G 6 HOH A 122 622 39 HOH HOH . G 6 HOH A 123 623 41 HOH HOH . G 6 HOH A 124 624 42 HOH HOH . G 6 HOH A 125 625 43 HOH HOH . G 6 HOH A 126 626 44 HOH HOH . G 6 HOH A 127 627 47 HOH HOH . G 6 HOH A 128 628 50 HOH HOH . G 6 HOH A 129 629 51 HOH HOH . G 6 HOH A 130 630 52 HOH HOH . G 6 HOH A 131 631 53 HOH HOH . G 6 HOH A 132 632 57 HOH HOH . G 6 HOH A 133 633 59 HOH HOH . G 6 HOH A 134 634 61 HOH HOH . G 6 HOH A 135 635 62 HOH HOH . G 6 HOH A 136 636 63 HOH HOH . G 6 HOH A 137 637 66 HOH HOH . G 6 HOH A 138 638 69 HOH HOH . G 6 HOH A 139 639 70 HOH HOH . G 6 HOH A 140 640 71 HOH HOH . G 6 HOH A 141 641 72 HOH HOH . G 6 HOH A 142 642 73 HOH HOH . G 6 HOH A 143 643 76 HOH HOH . G 6 HOH A 144 644 78 HOH HOH . G 6 HOH A 145 645 80 HOH HOH . G 6 HOH A 146 646 81 HOH HOH . G 6 HOH A 147 647 83 HOH HOH . G 6 HOH A 148 648 87 HOH HOH . G 6 HOH A 149 649 89 HOH HOH . G 6 HOH A 150 650 91 HOH HOH . G 6 HOH A 151 651 92 HOH HOH . G 6 HOH A 152 652 93 HOH HOH . G 6 HOH A 153 653 94 HOH HOH . G 6 HOH A 154 654 95 HOH HOH . G 6 HOH A 155 655 96 HOH HOH . G 6 HOH A 156 656 97 HOH HOH . G 6 HOH A 157 657 98 HOH HOH . G 6 HOH A 158 658 99 HOH HOH . G 6 HOH A 159 659 100 HOH HOH . G 6 HOH A 160 660 101 HOH HOH . G 6 HOH A 161 661 102 HOH HOH . G 6 HOH A 162 662 103 HOH HOH . G 6 HOH A 163 663 104 HOH HOH . G 6 HOH A 164 664 105 HOH HOH . G 6 HOH A 165 665 106 HOH HOH . G 6 HOH A 166 666 111 HOH HOH . G 6 HOH A 167 667 112 HOH HOH . G 6 HOH A 168 668 114 HOH HOH . G 6 HOH A 169 669 115 HOH HOH . G 6 HOH A 170 670 116 HOH HOH . G 6 HOH A 171 671 117 HOH HOH . G 6 HOH A 172 672 118 HOH HOH . G 6 HOH A 173 673 119 HOH HOH . G 6 HOH A 174 674 120 HOH HOH . G 6 HOH A 175 675 121 HOH HOH . G 6 HOH A 176 676 122 HOH HOH . G 6 HOH A 177 677 123 HOH HOH . G 6 HOH A 178 678 124 HOH HOH . G 6 HOH A 179 679 125 HOH HOH . G 6 HOH A 180 680 126 HOH HOH . G 6 HOH A 181 681 127 HOH HOH . G 6 HOH A 182 682 128 HOH HOH . G 6 HOH A 183 683 130 HOH HOH . G 6 HOH A 184 684 138 HOH HOH . G 6 HOH A 185 685 140 HOH HOH . G 6 HOH A 186 686 141 HOH HOH . G 6 HOH A 187 687 142 HOH HOH . G 6 HOH A 188 688 143 HOH HOH . G 6 HOH A 189 689 144 HOH HOH . G 6 HOH A 190 690 146 HOH HOH . G 6 HOH A 191 691 147 HOH HOH . G 6 HOH A 192 692 148 HOH HOH . G 6 HOH A 193 693 149 HOH HOH . G 6 HOH A 194 694 150 HOH HOH . G 6 HOH A 195 695 151 HOH HOH . G 6 HOH A 196 696 152 HOH HOH . G 6 HOH A 197 697 153 HOH HOH . G 6 HOH A 198 698 154 HOH HOH . G 6 HOH A 199 699 155 HOH HOH . G 6 HOH A 200 700 156 HOH HOH . G 6 HOH A 201 701 157 HOH HOH . G 6 HOH A 202 702 158 HOH HOH . G 6 HOH A 203 703 159 HOH HOH . G 6 HOH A 204 704 160 HOH HOH . G 6 HOH A 205 705 161 HOH HOH . G 6 HOH A 206 706 162 HOH HOH . G 6 HOH A 207 707 163 HOH HOH . G 6 HOH A 208 708 164 HOH HOH . G 6 HOH A 209 709 165 HOH HOH . G 6 HOH A 210 710 166 HOH HOH . G 6 HOH A 211 711 167 HOH HOH . G 6 HOH A 212 712 168 HOH HOH . G 6 HOH A 213 713 170 HOH HOH . G 6 HOH A 214 714 171 HOH HOH . G 6 HOH A 215 715 172 HOH HOH . G 6 HOH A 216 716 173 HOH HOH . G 6 HOH A 217 717 174 HOH HOH . G 6 HOH A 218 718 178 HOH HOH . G 6 HOH A 219 719 183 HOH HOH . G 6 HOH A 220 720 184 HOH HOH . G 6 HOH A 221 721 185 HOH HOH . G 6 HOH A 222 722 186 HOH HOH . G 6 HOH A 223 723 187 HOH HOH . G 6 HOH A 224 724 188 HOH HOH . G 6 HOH A 225 725 189 HOH HOH . G 6 HOH A 226 726 190 HOH HOH . G 6 HOH A 227 727 192 HOH HOH . G 6 HOH A 228 728 194 HOH HOH . G 6 HOH A 229 729 195 HOH HOH . G 6 HOH A 230 730 196 HOH HOH . G 6 HOH A 231 731 197 HOH HOH . G 6 HOH A 232 732 199 HOH HOH . G 6 HOH A 233 733 200 HOH HOH . G 6 HOH A 234 734 201 HOH HOH . G 6 HOH A 235 735 202 HOH HOH . G 6 HOH A 236 736 203 HOH HOH . G 6 HOH A 237 737 204 HOH HOH . G 6 HOH A 238 738 207 HOH HOH . G 6 HOH A 239 739 208 HOH HOH . G 6 HOH A 240 740 209 HOH HOH . G 6 HOH A 241 741 210 HOH HOH . G 6 HOH A 242 742 211 HOH HOH . G 6 HOH A 243 743 213 HOH HOH . G 6 HOH A 244 744 216 HOH HOH . G 6 HOH A 245 745 218 HOH HOH . G 6 HOH A 246 746 219 HOH HOH . G 6 HOH A 247 747 220 HOH HOH . G 6 HOH A 248 748 221 HOH HOH . G 6 HOH A 249 749 222 HOH HOH . G 6 HOH A 250 750 223 HOH HOH . G 6 HOH A 251 751 224 HOH HOH . G 6 HOH A 252 752 225 HOH HOH . G 6 HOH A 253 753 228 HOH HOH . G 6 HOH A 254 754 231 HOH HOH . G 6 HOH A 255 755 232 HOH HOH . G 6 HOH A 256 756 233 HOH HOH . G 6 HOH A 257 757 235 HOH HOH . G 6 HOH A 258 758 236 HOH HOH . G 6 HOH A 259 759 237 HOH HOH . G 6 HOH A 260 760 238 HOH HOH . G 6 HOH A 261 761 239 HOH HOH . G 6 HOH A 262 762 241 HOH HOH . G 6 HOH A 263 763 245 HOH HOH . G 6 HOH A 264 764 246 HOH HOH . G 6 HOH A 265 765 249 HOH HOH . G 6 HOH A 266 766 250 HOH HOH . G 6 HOH A 267 767 251 HOH HOH . G 6 HOH A 268 768 252 HOH HOH . G 6 HOH A 269 769 254 HOH HOH . G 6 HOH A 270 770 257 HOH HOH . G 6 HOH A 271 771 258 HOH HOH . G 6 HOH A 272 772 259 HOH HOH . G 6 HOH A 273 773 260 HOH HOH . G 6 HOH A 274 774 261 HOH HOH . G 6 HOH A 275 775 262 HOH HOH . G 6 HOH A 276 776 264 HOH HOH . G 6 HOH A 277 777 265 HOH HOH . G 6 HOH A 278 778 266 HOH HOH . G 6 HOH A 279 779 271 HOH HOH . G 6 HOH A 280 780 272 HOH HOH . G 6 HOH A 281 781 273 HOH HOH . G 6 HOH A 282 782 275 HOH HOH . G 6 HOH A 283 783 276 HOH HOH . G 6 HOH A 284 784 277 HOH HOH . G 6 HOH A 285 785 278 HOH HOH . G 6 HOH A 286 786 279 HOH HOH . G 6 HOH A 287 787 288 HOH HOH . G 6 HOH A 288 788 289 HOH HOH . G 6 HOH A 289 789 291 HOH HOH . G 6 HOH A 290 790 292 HOH HOH . G 6 HOH A 291 791 299 HOH HOH . G 6 HOH A 292 792 301 HOH HOH . G 6 HOH A 293 793 302 HOH HOH . G 6 HOH A 294 794 303 HOH HOH . G 6 HOH A 295 795 304 HOH HOH . G 6 HOH A 296 796 305 HOH HOH . G 6 HOH A 297 797 306 HOH HOH . G 6 HOH A 298 798 307 HOH HOH . G 6 HOH A 299 799 308 HOH HOH . G 6 HOH A 300 800 309 HOH HOH . G 6 HOH A 301 801 310 HOH HOH . G 6 HOH A 302 802 317 HOH HOH . G 6 HOH A 303 803 318 HOH HOH . G 6 HOH A 304 804 319 HOH HOH . G 6 HOH A 305 805 321 HOH HOH . G 6 HOH A 306 806 322 HOH HOH . G 6 HOH A 307 807 323 HOH HOH . G 6 HOH A 308 808 324 HOH HOH . G 6 HOH A 309 809 326 HOH HOH . G 6 HOH A 310 810 328 HOH HOH . G 6 HOH A 311 811 329 HOH HOH . G 6 HOH A 312 812 330 HOH HOH . G 6 HOH A 313 813 331 HOH HOH . G 6 HOH A 314 814 332 HOH HOH . G 6 HOH A 315 815 333 HOH HOH . G 6 HOH A 316 816 334 HOH HOH . G 6 HOH A 317 817 335 HOH HOH . G 6 HOH A 318 818 336 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -33.281 -11.109 11.573 1 59.53 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 3 -34.557 -11.544 11.078 1 67.49 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 3 -32.889 -11.936 12.786 1 62.39 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 3 -31.77 -11.308 13.395 1 64.4 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 3 -32.488 -13.359 12.404 1 61.16 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 3 -32.661 -14.251 13.524 1 50.79 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #