data_4WY3 # _model_server_result.job_id RgRB2W32Dz5LUV5fDmbjXQ _model_server_result.datetime_utc '2024-10-20 00:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WY3 # _exptl.entry_id 4WY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.606 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({[(3R,4aS,8aR)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.69 _cell.angle_gamma 90 _cell.entry_id 4WY3 _cell.length_a 108.106 _cell.length_b 81.82 _cell.length_c 53.243 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H34 N4 O2' _chem_comp.formula_weight 470.606 _chem_comp.id 3X5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({[(3R,4aS,8aR)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 3X5 doub 1 n y C9 C8 3X5 sing 2 n y C10 C5 3X5 sing 3 n y C8 C7 3X5 doub 4 n y C3 C2 3X5 doub 5 n y C3 C4 3X5 sing 6 n y C5 C4 3X5 sing 7 n n C5 C6 3X5 doub 8 n y C7 C6 3X5 sing 9 n y N2 C27 3X5 sing 10 n y N2 C28 3X5 doub 11 n y C2 C1 3X5 sing 12 n y C4 C11 3X5 doub 13 n y C27 C26 3X5 doub 14 n y C28 N3 3X5 sing 15 n y O1 C24 3X5 doub 16 n n C24 C23 3X5 sing 17 n n C1 C 3X5 sing 18 n n C1 C12 3X5 doub 19 n y C11 C12 3X5 sing 20 n y C26 N3 3X5 sing 21 n y C26 C25 3X5 sing 22 n n C23 C25 3X5 sing 23 n n C23 N1 3X5 sing 24 n n O C 3X5 doub 25 n n C N 3X5 sing 26 n n N1 C22 3X5 sing 27 n n C22 C21 3X5 sing 28 n n N C21 3X5 sing 29 n n N C13 3X5 sing 30 n n C21 C20 3X5 sing 31 n n C13 C14 3X5 sing 32 n n C20 C19 3X5 sing 33 n n C14 C19 3X5 sing 34 n n C14 C15 3X5 sing 35 n n C19 C18 3X5 sing 36 n n C15 C16 3X5 sing 37 n n C18 C17 3X5 sing 38 n n C16 C17 3X5 sing 39 n n C24 H1 3X5 sing 40 n n C23 H2 3X5 sing 41 n n C25 H3 3X5 sing 42 n n C25 H4 3X5 sing 43 n n N3 H5 3X5 sing 44 n n C28 H6 3X5 sing 45 n n C27 H8 3X5 sing 46 n n N1 H9 3X5 sing 47 n n C22 H11 3X5 sing 48 n n C22 H12 3X5 sing 49 n n C21 H13 3X5 sing 50 n n C20 H14 3X5 sing 51 n n C20 H15 3X5 sing 52 n n C19 H16 3X5 sing 53 n n C18 H17 3X5 sing 54 n n C18 H18 3X5 sing 55 n n C17 H19 3X5 sing 56 n n C17 H20 3X5 sing 57 n n C16 H21 3X5 sing 58 n n C16 H22 3X5 sing 59 n n C15 H23 3X5 sing 60 n n C15 H24 3X5 sing 61 n n C14 H25 3X5 sing 62 n n C13 H26 3X5 sing 63 n n C13 H27 3X5 sing 64 n n C12 H28 3X5 sing 65 n n C11 H29 3X5 sing 66 n n C3 H30 3X5 sing 67 n n C2 H31 3X5 sing 68 n n C10 H32 3X5 sing 69 n n C9 H33 3X5 sing 70 n n C8 H34 3X5 sing 71 n n C7 H35 3X5 sing 72 n n C6 H36 3X5 sing 73 n n # _atom_sites.entry_id 4WY3 _atom_sites.fract_transf_matrix[1][1] 0.00925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3X5 A 1 401 1 3X5 SLC . C 3 HOH A 1 501 21 HOH HOH . C 3 HOH A 2 502 51 HOH HOH . C 3 HOH A 3 503 40 HOH HOH . C 3 HOH A 4 504 43 HOH HOH . C 3 HOH A 5 505 7 HOH HOH . C 3 HOH A 6 506 18 HOH HOH . C 3 HOH A 7 507 22 HOH HOH . C 3 HOH A 8 508 3 HOH HOH . C 3 HOH A 9 509 70 HOH HOH . C 3 HOH A 10 510 71 HOH HOH . C 3 HOH A 11 511 38 HOH HOH . C 3 HOH A 12 512 76 HOH HOH . C 3 HOH A 13 513 44 HOH HOH . C 3 HOH A 14 514 91 HOH HOH . C 3 HOH A 15 515 66 HOH HOH . C 3 HOH A 16 516 86 HOH HOH . C 3 HOH A 17 517 10 HOH HOH . C 3 HOH A 18 518 68 HOH HOH . C 3 HOH A 19 519 1 HOH HOH . C 3 HOH A 20 520 2 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 5 HOH HOH . C 3 HOH A 23 523 6 HOH HOH . C 3 HOH A 24 524 8 HOH HOH . C 3 HOH A 25 525 9 HOH HOH . C 3 HOH A 26 526 11 HOH HOH . C 3 HOH A 27 527 12 HOH HOH . C 3 HOH A 28 528 13 HOH HOH . C 3 HOH A 29 529 14 HOH HOH . C 3 HOH A 30 530 15 HOH HOH . C 3 HOH A 31 531 16 HOH HOH . C 3 HOH A 32 532 17 HOH HOH . C 3 HOH A 33 533 19 HOH HOH . C 3 HOH A 34 534 20 HOH HOH . C 3 HOH A 35 535 23 HOH HOH . C 3 HOH A 36 536 24 HOH HOH . C 3 HOH A 37 537 25 HOH HOH . C 3 HOH A 38 538 26 HOH HOH . C 3 HOH A 39 539 27 HOH HOH . C 3 HOH A 40 540 28 HOH HOH . C 3 HOH A 41 541 30 HOH HOH . C 3 HOH A 42 542 31 HOH HOH . C 3 HOH A 43 543 32 HOH HOH . C 3 HOH A 44 544 33 HOH HOH . C 3 HOH A 45 545 34 HOH HOH . C 3 HOH A 46 546 35 HOH HOH . C 3 HOH A 47 547 37 HOH HOH . C 3 HOH A 48 548 39 HOH HOH . C 3 HOH A 49 549 41 HOH HOH . C 3 HOH A 50 550 42 HOH HOH . C 3 HOH A 51 551 45 HOH HOH . C 3 HOH A 52 552 46 HOH HOH . C 3 HOH A 53 553 47 HOH HOH . C 3 HOH A 54 554 48 HOH HOH . C 3 HOH A 55 555 49 HOH HOH . C 3 HOH A 56 556 50 HOH HOH . C 3 HOH A 57 557 52 HOH HOH . C 3 HOH A 58 558 53 HOH HOH . C 3 HOH A 59 559 54 HOH HOH . C 3 HOH A 60 560 55 HOH HOH . C 3 HOH A 61 561 56 HOH HOH . C 3 HOH A 62 562 57 HOH HOH . C 3 HOH A 63 563 58 HOH HOH . C 3 HOH A 64 564 59 HOH HOH . C 3 HOH A 65 565 60 HOH HOH . C 3 HOH A 66 566 61 HOH HOH . C 3 HOH A 67 567 62 HOH HOH . C 3 HOH A 68 568 63 HOH HOH . C 3 HOH A 69 569 64 HOH HOH . C 3 HOH A 70 570 65 HOH HOH . C 3 HOH A 71 571 67 HOH HOH . C 3 HOH A 72 572 69 HOH HOH . C 3 HOH A 73 573 72 HOH HOH . C 3 HOH A 74 574 73 HOH HOH . C 3 HOH A 75 575 74 HOH HOH . C 3 HOH A 76 576 75 HOH HOH . C 3 HOH A 77 577 77 HOH HOH . C 3 HOH A 78 578 78 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 80 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 83 HOH HOH . C 3 HOH A 84 584 84 HOH HOH . C 3 HOH A 85 585 85 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 3X5 . . . B 2 -21.03 -44.773 1.392 1 20 ? O1 3X5 401 A 1 HETATM 2 C C24 3X5 . . . B 2 -20.569 -43.645 1.453 1 20 ? C24 3X5 401 A 1 HETATM 3 C C23 3X5 . . . B 2 -21.394 -42.509 2.01 1 20 ? C23 3X5 401 A 1 HETATM 4 C C25 3X5 . . . B 2 -20.492 -41.564 2.794 1 20 ? C25 3X5 401 A 1 HETATM 5 C C26 3X5 . . . B 2 -19.8 -40.621 1.84 1 20 ? C26 3X5 401 A 1 HETATM 6 N N3 3X5 . . . B 2 -18.578 -40.073 2.005 1 20 ? N3 3X5 401 A 1 HETATM 7 C C28 3X5 . . . B 2 -18.32 -39.29 0.934 1 20 ? C28 3X5 401 A 1 HETATM 8 N N2 3X5 . . . B 2 -19.377 -39.342 0.095 1 20 ? N2 3X5 401 A 1 HETATM 9 C C27 3X5 . . . B 2 -20.305 -40.16 0.635 1 20 ? C27 3X5 401 A 1 HETATM 10 N N1 3X5 . . . B 2 -22.436 -43.05 2.904 1 20 ? N1 3X5 401 A 1 HETATM 11 C C22 3X5 . . . B 2 -23.388 -41.982 3.25 1 20 ? C22 3X5 401 A 1 HETATM 12 C C21 3X5 . . . B 2 -24.761 -42.594 3.529 1 20 ? C21 3X5 401 A 1 HETATM 13 C C20 3X5 . . . B 2 -24.873 -42.989 5 1 20 ? C20 3X5 401 A 1 HETATM 14 C C19 3X5 . . . B 2 -24.754 -41.777 5.913 1 20 ? C19 3X5 401 A 1 HETATM 15 C C18 3X5 . . . B 2 -24.951 -42.189 7.366 1 20 ? C18 3X5 401 A 1 HETATM 16 C C17 3X5 . . . B 2 -24.858 -40.977 8.286 1 20 ? C17 3X5 401 A 1 HETATM 17 C C16 3X5 . . . B 2 -25.846 -39.891 7.875 1 20 ? C16 3X5 401 A 1 HETATM 18 C C15 3X5 . . . B 2 -25.664 -39.499 6.412 1 20 ? C15 3X5 401 A 1 HETATM 19 C C14 3X5 . . . B 2 -25.773 -40.723 5.512 1 20 ? C14 3X5 401 A 1 HETATM 20 C C13 3X5 . . . B 2 -25.564 -40.327 4.057 1 20 ? C13 3X5 401 A 1 HETATM 21 N N 3X5 . . . B 2 -25.764 -41.553 3.29 1 20 ? N 3X5 401 A 1 HETATM 22 C C 3X5 . . . B 2 -26.752 -41.776 2.427 1 20 ? C 3X5 401 A 1 HETATM 23 O O 3X5 . . . B 2 -27.149 -42.903 2.182 1 20 ? O 3X5 401 A 1 HETATM 24 C C1 3X5 . . . B 2 -27.391 -40.605 1.741 1 20 ? C1 3X5 401 A 1 HETATM 25 C C12 3X5 . . . B 2 -28.289 -39.8 2.432 1 20 ? C12 3X5 401 A 1 HETATM 26 C C11 3X5 . . . B 2 -28.881 -38.715 1.796 1 20 ? C11 3X5 401 A 1 HETATM 27 C C4 3X5 . . . B 2 -28.575 -38.435 0.469 1 20 ? C4 3X5 401 A 1 HETATM 28 C C3 3X5 . . . B 2 -27.677 -39.241 -0.222 1 20 ? C3 3X5 401 A 1 HETATM 29 C C2 3X5 . . . B 2 -27.085 -40.325 0.414 1 20 ? C2 3X5 401 A 1 HETATM 30 C C5 3X5 . . . B 2 -29.208 -37.275 -0.211 1 20 ? C5 3X5 401 A 1 HETATM 31 C C10 3X5 . . . B 2 -29.26 -37.226 -1.599 1 20 ? C10 3X5 401 A 1 HETATM 32 C C9 3X5 . . . B 2 -29.852 -36.141 -2.235 1 20 ? C9 3X5 401 A 1 HETATM 33 C C8 3X5 . . . B 2 -30.393 -35.105 -1.483 1 20 ? C8 3X5 401 A 1 HETATM 34 C C7 3X5 . . . B 2 -30.341 -35.153 -0.095 1 20 ? C7 3X5 401 A 1 HETATM 35 C C6 3X5 . . . B 2 -29.749 -36.238 0.541 1 20 ? C6 3X5 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #