data_4WYL # _model_server_result.job_id mZKIIeV1km2VtUiszorVDA _model_server_result.datetime_utc '2024-12-06 04:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4WYL # _exptl.entry_id 4WYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WYL _cell.length_a 91.627 _cell.length_b 91.627 _cell.length_c 117.852 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 238 A ASP 238 1_555 F MN MN . A MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OD1 ASP 240 A ASP 240 1_555 F MN MN . A MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 4WYL _atom_sites.fract_transf_matrix[1][1] 0.010914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 512 GOL GOL . C 2 GOL A 1 502 513 GOL GOL . D 2 GOL A 1 503 514 GOL GOL . E 3 ACT A 1 504 1 ACT ACY . F 4 MN A 1 505 1 MN MN . G 5 HOH A 1 601 62 HOH HOH . G 5 HOH A 2 602 76 HOH HOH . G 5 HOH A 3 603 121 HOH HOH . G 5 HOH A 4 604 57 HOH HOH . G 5 HOH A 5 605 72 HOH HOH . G 5 HOH A 6 606 7 HOH HOH . G 5 HOH A 7 607 4 HOH HOH . G 5 HOH A 8 608 16 HOH HOH . G 5 HOH A 9 609 75 HOH HOH . G 5 HOH A 10 610 94 HOH HOH . G 5 HOH A 11 611 82 HOH HOH . G 5 HOH A 12 612 9 HOH HOH . G 5 HOH A 13 613 149 HOH HOH . G 5 HOH A 14 614 59 HOH HOH . G 5 HOH A 15 615 137 HOH HOH . G 5 HOH A 16 616 77 HOH HOH . G 5 HOH A 17 617 115 HOH HOH . G 5 HOH A 18 618 63 HOH HOH . G 5 HOH A 19 619 111 HOH HOH . G 5 HOH A 20 620 44 HOH HOH . G 5 HOH A 21 621 119 HOH HOH . G 5 HOH A 22 622 91 HOH HOH . G 5 HOH A 23 623 5 HOH HOH . G 5 HOH A 24 624 60 HOH HOH . G 5 HOH A 25 625 130 HOH HOH . G 5 HOH A 26 626 18 HOH HOH . G 5 HOH A 27 627 87 HOH HOH . G 5 HOH A 28 628 136 HOH HOH . G 5 HOH A 29 629 138 HOH HOH . G 5 HOH A 30 630 90 HOH HOH . G 5 HOH A 31 631 83 HOH HOH . G 5 HOH A 32 632 89 HOH HOH . G 5 HOH A 33 633 54 HOH HOH . G 5 HOH A 34 634 74 HOH HOH . G 5 HOH A 35 635 21 HOH HOH . G 5 HOH A 36 636 28 HOH HOH . G 5 HOH A 37 637 73 HOH HOH . G 5 HOH A 38 638 155 HOH HOH . G 5 HOH A 39 639 116 HOH HOH . G 5 HOH A 40 640 29 HOH HOH . G 5 HOH A 41 641 124 HOH HOH . G 5 HOH A 42 642 78 HOH HOH . G 5 HOH A 43 643 109 HOH HOH . G 5 HOH A 44 644 152 HOH HOH . G 5 HOH A 45 645 154 HOH HOH . G 5 HOH A 46 646 1 HOH HOH . G 5 HOH A 47 647 2 HOH HOH . G 5 HOH A 48 648 3 HOH HOH . G 5 HOH A 49 649 6 HOH HOH . G 5 HOH A 50 650 8 HOH HOH . G 5 HOH A 51 651 10 HOH HOH . G 5 HOH A 52 652 11 HOH HOH . G 5 HOH A 53 653 12 HOH HOH . G 5 HOH A 54 654 13 HOH HOH . G 5 HOH A 55 655 14 HOH HOH . G 5 HOH A 56 656 15 HOH HOH . G 5 HOH A 57 657 17 HOH HOH . G 5 HOH A 58 658 19 HOH HOH . G 5 HOH A 59 659 20 HOH HOH . G 5 HOH A 60 660 22 HOH HOH . G 5 HOH A 61 661 23 HOH HOH . G 5 HOH A 62 662 26 HOH HOH . G 5 HOH A 63 663 27 HOH HOH . G 5 HOH A 64 664 30 HOH HOH . G 5 HOH A 65 665 31 HOH HOH . G 5 HOH A 66 666 32 HOH HOH . G 5 HOH A 67 667 33 HOH HOH . G 5 HOH A 68 668 34 HOH HOH . G 5 HOH A 69 669 35 HOH HOH . G 5 HOH A 70 670 36 HOH HOH . G 5 HOH A 71 671 37 HOH HOH . G 5 HOH A 72 672 38 HOH HOH . G 5 HOH A 73 673 39 HOH HOH . G 5 HOH A 74 674 40 HOH HOH . G 5 HOH A 75 675 41 HOH HOH . G 5 HOH A 76 676 42 HOH HOH . G 5 HOH A 77 677 43 HOH HOH . G 5 HOH A 78 678 45 HOH HOH . G 5 HOH A 79 679 46 HOH HOH . G 5 HOH A 80 680 47 HOH HOH . G 5 HOH A 81 681 48 HOH HOH . G 5 HOH A 82 682 49 HOH HOH . G 5 HOH A 83 683 50 HOH HOH . G 5 HOH A 84 684 51 HOH HOH . G 5 HOH A 85 685 52 HOH HOH . G 5 HOH A 86 686 55 HOH HOH . G 5 HOH A 87 687 56 HOH HOH . G 5 HOH A 88 688 58 HOH HOH . G 5 HOH A 89 689 61 HOH HOH . G 5 HOH A 90 690 64 HOH HOH . G 5 HOH A 91 691 65 HOH HOH . G 5 HOH A 92 692 66 HOH HOH . G 5 HOH A 93 693 67 HOH HOH . G 5 HOH A 94 694 68 HOH HOH . G 5 HOH A 95 695 71 HOH HOH . G 5 HOH A 96 696 79 HOH HOH . G 5 HOH A 97 697 80 HOH HOH . G 5 HOH A 98 698 81 HOH HOH . G 5 HOH A 99 699 84 HOH HOH . G 5 HOH A 100 700 85 HOH HOH . G 5 HOH A 101 701 86 HOH HOH . G 5 HOH A 102 702 88 HOH HOH . G 5 HOH A 103 703 92 HOH HOH . G 5 HOH A 104 704 93 HOH HOH . G 5 HOH A 105 705 95 HOH HOH . G 5 HOH A 106 706 98 HOH HOH . G 5 HOH A 107 707 99 HOH HOH . G 5 HOH A 108 708 100 HOH HOH . G 5 HOH A 109 709 101 HOH HOH . G 5 HOH A 110 710 102 HOH HOH . G 5 HOH A 111 711 103 HOH HOH . G 5 HOH A 112 712 104 HOH HOH . G 5 HOH A 113 713 105 HOH HOH . G 5 HOH A 114 714 106 HOH HOH . G 5 HOH A 115 715 107 HOH HOH . G 5 HOH A 116 716 108 HOH HOH . G 5 HOH A 117 717 110 HOH HOH . G 5 HOH A 118 718 112 HOH HOH . G 5 HOH A 119 719 113 HOH HOH . G 5 HOH A 120 720 114 HOH HOH . G 5 HOH A 121 721 117 HOH HOH . G 5 HOH A 122 722 118 HOH HOH . G 5 HOH A 123 723 120 HOH HOH . G 5 HOH A 124 724 122 HOH HOH . G 5 HOH A 125 725 123 HOH HOH . G 5 HOH A 126 726 125 HOH HOH . G 5 HOH A 127 727 126 HOH HOH . G 5 HOH A 128 728 127 HOH HOH . G 5 HOH A 129 729 128 HOH HOH . G 5 HOH A 130 730 129 HOH HOH . G 5 HOH A 131 731 131 HOH HOH . G 5 HOH A 132 732 132 HOH HOH . G 5 HOH A 133 733 133 HOH HOH . G 5 HOH A 134 734 134 HOH HOH . G 5 HOH A 135 735 135 HOH HOH . G 5 HOH A 136 736 139 HOH HOH . G 5 HOH A 137 737 140 HOH HOH . G 5 HOH A 138 738 141 HOH HOH . G 5 HOH A 139 739 142 HOH HOH . G 5 HOH A 140 740 143 HOH HOH . G 5 HOH A 141 741 144 HOH HOH . G 5 HOH A 142 742 145 HOH HOH . G 5 HOH A 143 743 147 HOH HOH . G 5 HOH A 144 744 148 HOH HOH . G 5 HOH A 145 745 150 HOH HOH . G 5 HOH A 146 746 151 HOH HOH . G 5 HOH A 147 747 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 7.604 22.108 41.122 1 25.87 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 7.329 21.729 39.768 1 25.85 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 7.557 20.884 42.034 1 25.96 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 8.552 19.932 41.64 1 26.03 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 6.179 20.231 41.973 1 25.91 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 6.135 19.093 42.841 1 26.17 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #