data_4WZ6 # _model_server_result.job_id e369WSr4vH1ONptQXlZXYQ _model_server_result.datetime_utc '2024-11-20 03:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4WZ6 # _exptl.entry_id 4WZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WZ6 _cell.length_a 101.456 _cell.length_b 101.456 _cell.length_c 58.335 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 185 A SER 572 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc2 C MG MG . A MG 702 1_555 D O HOH . A HOH 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc3 C MG MG . A MG 702 1_555 D O HOH . A HOH 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4WZ6 _atom_sites.fract_transf_matrix[1][1] 0.009856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 701 1 ATP ATP . C 3 MG A 1 702 2 MG MG . D 4 HOH A 1 801 37 HOH HOH . D 4 HOH A 2 802 40 HOH HOH . D 4 HOH A 3 803 27 HOH HOH . D 4 HOH A 4 804 12 HOH HOH . D 4 HOH A 5 805 39 HOH HOH . D 4 HOH A 6 806 22 HOH HOH . D 4 HOH A 7 807 47 HOH HOH . D 4 HOH A 8 808 7 HOH HOH . D 4 HOH A 9 809 48 HOH HOH . D 4 HOH A 10 810 44 HOH HOH . D 4 HOH A 11 811 25 HOH HOH . D 4 HOH A 12 812 26 HOH HOH . D 4 HOH A 13 813 19 HOH HOH . D 4 HOH A 14 814 36 HOH HOH . D 4 HOH A 15 815 18 HOH HOH . D 4 HOH A 16 816 31 HOH HOH . D 4 HOH A 17 817 42 HOH HOH . D 4 HOH A 18 818 1 HOH HOH . D 4 HOH A 19 819 2 HOH HOH . D 4 HOH A 20 820 3 HOH HOH . D 4 HOH A 21 821 4 HOH HOH . D 4 HOH A 22 822 5 HOH HOH . D 4 HOH A 23 823 6 HOH HOH . D 4 HOH A 24 824 8 HOH HOH . D 4 HOH A 25 825 9 HOH HOH . D 4 HOH A 26 826 10 HOH HOH . D 4 HOH A 27 827 11 HOH HOH . D 4 HOH A 28 828 13 HOH HOH . D 4 HOH A 29 829 14 HOH HOH . D 4 HOH A 30 830 15 HOH HOH . D 4 HOH A 31 831 16 HOH HOH . D 4 HOH A 32 832 17 HOH HOH . D 4 HOH A 33 833 20 HOH HOH . D 4 HOH A 34 834 21 HOH HOH . D 4 HOH A 35 835 23 HOH HOH . D 4 HOH A 36 836 24 HOH HOH . D 4 HOH A 37 837 28 HOH HOH . D 4 HOH A 38 838 29 HOH HOH . D 4 HOH A 39 839 30 HOH HOH . D 4 HOH A 40 840 32 HOH HOH . D 4 HOH A 41 841 33 HOH HOH . D 4 HOH A 42 842 34 HOH HOH . D 4 HOH A 43 843 35 HOH HOH . D 4 HOH A 44 844 38 HOH HOH . D 4 HOH A 45 845 41 HOH HOH . D 4 HOH A 46 846 43 HOH HOH . D 4 HOH A 47 847 45 HOH HOH . D 4 HOH A 48 848 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 32.165 64.023 18.816 1 24.05 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . B 2 32.222 64.919 17.734 1 22.3 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . B 2 32.224 62.488 18.58 1 21.68 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . B 2 31.307 64.514 19.944 1 24.63 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . B 2 34.54 63.796 20.583 1 21.62 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . B 2 34.414 62.227 20.498 1 21.56 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . B 2 34.244 64.432 21.901 1 23.08 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . B 2 33.578 64.498 19.495 1 22.53 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . B 2 37.203 63.458 19.506 1 23.9 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . B 2 36.771 62.757 18.292 1 25.47 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . B 2 38.028 62.787 20.593 1 21.25 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . B 2 35.992 64.291 20.129 1 23.57 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . B 2 38.016 64.746 18.997 1 23.84 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . B 2 39.278 65.189 19.477 1 21.3 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . B 2 40.327 65.165 18.387 1 25.12 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . B 2 40.854 63.835 18.157 1 23.57 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . B 2 39.736 65.505 17.025 1 27.09 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . B 2 40.662 66.323 16.345 1 25.66 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . B 2 39.626 64.22 16.217 1 22.5 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . B 2 39.809 64.391 14.806 1 21.32 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . B 2 40.762 63.431 16.771 1 23.93 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . B 2 40.555 61.952 16.725 1 20.54 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . B 2 39.394 61.307 16.993 1 24.36 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . B 2 39.575 59.991 16.918 1 24.33 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . B 2 40.865 59.778 16.624 1 20.52 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . B 2 41.649 58.587 16.426 1 22.68 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . B 2 41.049 57.389 16.518 1 24.49 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . B 2 42.93 58.752 16.144 1 23.06 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . B 2 43.484 59.975 16.042 1 23.32 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . B 2 42.819 61.126 16.204 1 24.74 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . B 2 41.505 61.057 16.516 1 21.65 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #