data_4WZ9
#
_model_server_result.job_id            6SRlB2q5oUzfgiZc-t0u2w 
_model_server_result.datetime_utc      '2024-11-28 14:57:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1003}' 
#
_entry.id    4WZ9 
#
_exptl.entry_id    4WZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WZ9 
_cell.length_a            113.48 
_cell.length_b            132.9 
_cell.length_c            146.01 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 719 A CYS 736 1_555 A SG CYS 726 A CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 755 A CYS 772 1_555 A SG CYS 791 A CYS 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 B SG CYS 719 B CYS 736 1_555 B SG CYS 726 B CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 B SG CYS 755 B CYS 772 1_555 B SG CYS 791 B CYS 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
covale ? covale1 A OH TYR 517 A TYR 534 1_555 A CB HIS 598 A HIS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
metalc ? metalc1 A NE2 HIS 349 A HIS 366 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 A NE2 HIS 353 A HIS 370 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 A OE1 GLU 372 A GLU 389 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc4 E ZN ZN . A ZN 1001 1_555 C O ALA 1 M ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc5 B NE2 HIS 349 B HIS 366 1_555 I ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 B NE2 HIS 353 B HIS 370 1_555 I ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc7 B OE1 GLU 372 B GLU 389 1_555 I ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc8 I ZN ZN . B ZN 1001 1_555 D O ALA 1 N ALA 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4WZ9 
_atom_sites.fract_transf_matrix[1][1]    0.008812 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007524 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 ZN A 1 1001 1 ZN Zn . 
F 5 GOL A 1 1002 1 GOL GOL . 
G 5 GOL A 1 1003 1 GOL GOL . 
H 6 NHE A 1 1004 1 NHE NHE . 
I 4 ZN B 1 1001 2 ZN Zn . 
J 5 GOL B 1 1002 1 GOL GOL . 
K 5 GOL B 1 1003 1 GOL GOL . 
L 5 GOL B 1 1004 1 GOL GOL . 
M 7 CU B 1 1005 1 CU CU . 
N 8 HOH A 1 1101 134 HOH HOH . 
N 8 HOH A 2 1102 62 HOH HOH . 
N 8 HOH A 3 1103 70 HOH HOH . 
N 8 HOH A 4 1104 3 HOH HOH . 
N 8 HOH A 5 1105 4 HOH HOH . 
N 8 HOH A 6 1106 6 HOH HOH . 
N 8 HOH A 7 1107 7 HOH HOH . 
N 8 HOH A 8 1108 11 HOH HOH . 
N 8 HOH A 9 1109 13 HOH HOH . 
N 8 HOH A 10 1110 16 HOH HOH . 
N 8 HOH A 11 1111 18 HOH HOH . 
N 8 HOH A 12 1112 22 HOH HOH . 
N 8 HOH A 13 1113 24 HOH HOH . 
N 8 HOH A 14 1114 26 HOH HOH . 
N 8 HOH A 15 1115 27 HOH HOH . 
N 8 HOH A 16 1116 29 HOH HOH . 
N 8 HOH A 17 1117 30 HOH HOH . 
N 8 HOH A 18 1118 31 HOH HOH . 
N 8 HOH A 19 1119 35 HOH HOH . 
N 8 HOH A 20 1120 36 HOH HOH . 
N 8 HOH A 21 1121 38 HOH HOH . 
N 8 HOH A 22 1122 39 HOH HOH . 
N 8 HOH A 23 1123 41 HOH HOH . 
N 8 HOH A 24 1124 42 HOH HOH . 
N 8 HOH A 25 1125 43 HOH HOH . 
N 8 HOH A 26 1126 44 HOH HOH . 
N 8 HOH A 27 1127 45 HOH HOH . 
N 8 HOH A 28 1128 46 HOH HOH . 
N 8 HOH A 29 1129 47 HOH HOH . 
N 8 HOH A 30 1130 54 HOH HOH . 
N 8 HOH A 31 1131 55 HOH HOH . 
N 8 HOH A 32 1132 56 HOH HOH . 
N 8 HOH A 33 1133 61 HOH HOH . 
N 8 HOH A 34 1134 63 HOH HOH . 
N 8 HOH A 35 1135 64 HOH HOH . 
N 8 HOH A 36 1136 67 HOH HOH . 
N 8 HOH A 37 1137 68 HOH HOH . 
N 8 HOH A 38 1138 69 HOH HOH . 
N 8 HOH A 39 1139 76 HOH HOH . 
N 8 HOH A 40 1140 77 HOH HOH . 
N 8 HOH A 41 1141 78 HOH HOH . 
N 8 HOH A 42 1142 79 HOH HOH . 
N 8 HOH A 43 1143 80 HOH HOH . 
N 8 HOH A 44 1144 81 HOH HOH . 
N 8 HOH A 45 1145 92 HOH HOH . 
N 8 HOH A 46 1146 93 HOH HOH . 
N 8 HOH A 47 1147 94 HOH HOH . 
N 8 HOH A 48 1148 95 HOH HOH . 
N 8 HOH A 49 1149 98 HOH HOH . 
N 8 HOH A 50 1150 99 HOH HOH . 
N 8 HOH A 51 1151 101 HOH HOH . 
N 8 HOH A 52 1152 103 HOH HOH . 
N 8 HOH A 53 1153 106 HOH HOH . 
N 8 HOH A 54 1154 107 HOH HOH . 
N 8 HOH A 55 1155 108 HOH HOH . 
N 8 HOH A 56 1156 109 HOH HOH . 
N 8 HOH A 57 1157 110 HOH HOH . 
N 8 HOH A 58 1158 111 HOH HOH . 
N 8 HOH A 59 1159 112 HOH HOH . 
N 8 HOH A 60 1160 119 HOH HOH . 
N 8 HOH A 61 1161 120 HOH HOH . 
N 8 HOH A 62 1162 124 HOH HOH . 
N 8 HOH A 63 1163 125 HOH HOH . 
N 8 HOH A 64 1164 126 HOH HOH . 
N 8 HOH A 65 1165 127 HOH HOH . 
N 8 HOH A 66 1166 130 HOH HOH . 
N 8 HOH A 67 1167 131 HOH HOH . 
N 8 HOH A 68 1168 132 HOH HOH . 
N 8 HOH A 69 1169 133 HOH HOH . 
N 8 HOH A 70 1170 138 HOH HOH . 
N 8 HOH A 71 1171 139 HOH HOH . 
N 8 HOH A 72 1172 140 HOH HOH . 
N 8 HOH A 73 1173 141 HOH HOH . 
O 8 HOH B 1 1101 144 HOH HOH . 
O 8 HOH B 2 1102 71 HOH HOH . 
O 8 HOH B 3 1103 100 HOH HOH . 
O 8 HOH B 4 1104 28 HOH HOH . 
O 8 HOH B 5 1105 72 HOH HOH . 
O 8 HOH B 6 1106 85 HOH HOH . 
O 8 HOH B 7 1107 1 HOH HOH . 
O 8 HOH B 8 1108 2 HOH HOH . 
O 8 HOH B 9 1109 5 HOH HOH . 
O 8 HOH B 10 1110 8 HOH HOH . 
O 8 HOH B 11 1111 9 HOH HOH . 
O 8 HOH B 12 1112 10 HOH HOH . 
O 8 HOH B 13 1113 12 HOH HOH . 
O 8 HOH B 14 1114 14 HOH HOH . 
O 8 HOH B 15 1115 15 HOH HOH . 
O 8 HOH B 16 1116 17 HOH HOH . 
O 8 HOH B 17 1117 19 HOH HOH . 
O 8 HOH B 18 1118 20 HOH HOH . 
O 8 HOH B 19 1119 21 HOH HOH . 
O 8 HOH B 20 1120 23 HOH HOH . 
O 8 HOH B 21 1121 25 HOH HOH . 
O 8 HOH B 22 1122 32 HOH HOH . 
O 8 HOH B 23 1123 33 HOH HOH . 
O 8 HOH B 24 1124 34 HOH HOH . 
O 8 HOH B 25 1125 37 HOH HOH . 
O 8 HOH B 26 1126 40 HOH HOH . 
O 8 HOH B 27 1127 48 HOH HOH . 
O 8 HOH B 28 1128 49 HOH HOH . 
O 8 HOH B 29 1129 50 HOH HOH . 
O 8 HOH B 30 1130 51 HOH HOH . 
O 8 HOH B 31 1131 52 HOH HOH . 
O 8 HOH B 32 1132 53 HOH HOH . 
O 8 HOH B 33 1133 57 HOH HOH . 
O 8 HOH B 34 1134 58 HOH HOH . 
O 8 HOH B 35 1135 59 HOH HOH . 
O 8 HOH B 36 1136 60 HOH HOH . 
O 8 HOH B 37 1137 65 HOH HOH . 
O 8 HOH B 38 1138 66 HOH HOH . 
O 8 HOH B 39 1139 73 HOH HOH . 
O 8 HOH B 40 1140 74 HOH HOH . 
O 8 HOH B 41 1141 75 HOH HOH . 
O 8 HOH B 42 1142 82 HOH HOH . 
O 8 HOH B 43 1143 83 HOH HOH . 
O 8 HOH B 44 1144 84 HOH HOH . 
O 8 HOH B 45 1145 86 HOH HOH . 
O 8 HOH B 46 1146 87 HOH HOH . 
O 8 HOH B 47 1147 88 HOH HOH . 
O 8 HOH B 48 1148 89 HOH HOH . 
O 8 HOH B 49 1149 90 HOH HOH . 
O 8 HOH B 50 1150 91 HOH HOH . 
O 8 HOH B 51 1151 96 HOH HOH . 
O 8 HOH B 52 1152 97 HOH HOH . 
O 8 HOH B 53 1153 102 HOH HOH . 
O 8 HOH B 54 1154 104 HOH HOH . 
O 8 HOH B 55 1155 105 HOH HOH . 
O 8 HOH B 56 1156 113 HOH HOH . 
O 8 HOH B 57 1157 114 HOH HOH . 
O 8 HOH B 58 1158 115 HOH HOH . 
O 8 HOH B 59 1159 116 HOH HOH . 
O 8 HOH B 60 1160 117 HOH HOH . 
O 8 HOH B 61 1161 118 HOH HOH . 
O 8 HOH B 62 1162 121 HOH HOH . 
O 8 HOH B 63 1163 122 HOH HOH . 
O 8 HOH B 64 1164 123 HOH HOH . 
O 8 HOH B 65 1165 128 HOH HOH . 
O 8 HOH B 66 1166 129 HOH HOH . 
O 8 HOH B 67 1167 135 HOH HOH . 
O 8 HOH B 68 1168 136 HOH HOH . 
O 8 HOH B 69 1169 137 HOH HOH . 
O 8 HOH B 70 1170 142 HOH HOH . 
O 8 HOH B 71 1171 143 HOH HOH . 
O 8 HOH B 72 1172 145 HOH HOH . 
O 8 HOH B 73 1173 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 45.203 -23.365 -23.978 1 99.76 ? C1 GOL 1003 B 1 
HETATM 2 O O1 GOL . . . K 5 44.571 -23.455 -22.695 1 108.01 ? O1 GOL 1003 B 1 
HETATM 3 C C2 GOL . . . K 5 46.437 -22.471 -23.865 1 95.88 ? C2 GOL 1003 B 1 
HETATM 4 O O2 GOL . . . K 5 47.462 -23.197 -23.181 1 79.48 ? O2 GOL 1003 B 1 
HETATM 5 C C3 GOL . . . K 5 46.932 -22.038 -25.252 1 98.24 ? C3 GOL 1003 B 1 
HETATM 6 O O3 GOL . . . K 5 46.058 -21.09 -25.913 1 93.58 ? O3 GOL 1003 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#