data_4WZM
#
_model_server_result.job_id            kOoUWJLWZZ6EYlWMqk9ciw 
_model_server_result.datetime_utc      '2024-12-08 01:07:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    4WZM 
#
_exptl.entry_id    4WZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WZM 
_cell.length_a            94.306 
_cell.length_b            94.306 
_cell.length_c            100.815 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 63 A ASP 63 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc2 A O THR 64 A THR 64 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
hydrog WATSON-CRICK hydrog1 B N1 G 3 B G 905 1_555 C N3 C 7 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N2 G 3 B G 905 1_555 C O2 C 7 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O6 G 3 B G 905 1_555 C N4 C 7 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 G 4 B G 906 1_555 C N3 C 6 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N2 G 4 B G 906 1_555 C O2 C 6 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O6 G 4 B G 906 1_555 C N4 C 6 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog7 B O6 G 5 B G 907 1_555 C N4 C 5 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N3 C 6 B C 908 1_555 C N1 G 4 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N4 C 6 B C 908 1_555 C O6 G 4 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B O2 C 6 B C 908 1_555 C N2 G 4 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N3 C 7 B C 909 1_555 C N1 G 3 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N4 C 7 B C 909 1_555 C O6 G 3 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B O2 C 7 B C 909 1_555 C N2 G 3 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 250 n n 
C1 C2 GOL sing 251 n n 
C1 H11 GOL sing 252 n n 
C1 H12 GOL sing 253 n n 
O1 HO1 GOL sing 254 n n 
C2 O2 GOL sing 255 n n 
C2 C3 GOL sing 256 n n 
C2 H2 GOL sing 257 n n 
O2 HO2 GOL sing 258 n n 
C3 O3 GOL sing 259 n n 
C3 H31 GOL sing 260 n n 
C3 H32 GOL sing 261 n n 
O3 HO3 GOL sing 262 n n 
#
_atom_sites.entry_id                     4WZM 
_atom_sites.fract_transf_matrix[1][1]    0.010604 
_atom_sites.fract_transf_matrix[1][2]    0.006122 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 501 511 GOL GOL . 
E 4 GOL A 1 502 512 GOL GOL . 
F 5 ACT A 1 503 1 ACT ACY . 
G 6 MN A 1 504 1 MN MN . 
H 7 HOH A 1 601 8 HOH HOH . 
H 7 HOH A 2 602 2 HOH HOH . 
H 7 HOH A 3 603 18 HOH HOH . 
H 7 HOH A 4 604 9 HOH HOH . 
H 7 HOH A 5 605 76 HOH HOH . 
H 7 HOH A 6 606 1 HOH HOH . 
H 7 HOH A 7 607 3 HOH HOH . 
H 7 HOH A 8 608 5 HOH HOH . 
H 7 HOH A 9 609 6 HOH HOH . 
H 7 HOH A 10 610 7 HOH HOH . 
H 7 HOH A 11 611 16 HOH HOH . 
H 7 HOH A 12 612 19 HOH HOH . 
H 7 HOH A 13 613 21 HOH HOH . 
H 7 HOH A 14 614 22 HOH HOH . 
H 7 HOH A 15 615 23 HOH HOH . 
H 7 HOH A 16 616 24 HOH HOH . 
H 7 HOH A 17 617 25 HOH HOH . 
H 7 HOH A 18 618 28 HOH HOH . 
H 7 HOH A 19 619 30 HOH HOH . 
H 7 HOH A 20 620 32 HOH HOH . 
H 7 HOH A 21 621 35 HOH HOH . 
H 7 HOH A 22 622 37 HOH HOH . 
H 7 HOH A 23 623 44 HOH HOH . 
H 7 HOH A 24 624 54 HOH HOH . 
H 7 HOH A 25 625 74 HOH HOH . 
H 7 HOH A 26 626 78 HOH HOH . 
H 7 HOH A 27 627 79 HOH HOH . 
H 7 HOH A 28 628 80 HOH HOH . 
H 7 HOH A 29 629 83 HOH HOH . 
H 7 HOH A 30 630 84 HOH HOH . 
H 7 HOH A 31 631 86 HOH HOH . 
H 7 HOH A 32 632 88 HOH HOH . 
I 7 HOH B 1 1001 77 HOH HOH . 
I 7 HOH B 2 1002 82 HOH HOH . 
J 7 HOH C 1 1001 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 34.902 30.212 36.997 1 69.14 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . E 4 35.079 30.189 35.571 1 65.73 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . E 4 33.651 29.428 37.392 1 69.45 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . E 4 33.221 29.806 38.708 1 67.61 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . E 4 33.964 27.937 37.325 1 71.62 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . E 4 34.48 27.61 36.026 1 69.24 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#