data_4WZU # _model_server_result.job_id GYIuibwdhXR_g7ekIuxlvg _model_server_result.datetime_utc '2024-11-05 01:28:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WZU # _exptl.entry_id 4WZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WZU _cell.length_a 78.858 _cell.length_b 60.212 _cell.length_c 68.436 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 60.212 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 244 A GLU 244 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A OD2 ASP 246 A ASP 246 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A OD2 ASP 305 A ASP 305 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 B NA NA . A NA 401 1_555 C O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 B NA NA . A NA 401 1_555 C O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc6 B NA NA . A NA 401 1_555 C O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WZU _atom_sites.fract_transf_matrix[1][1] 0.012681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 3 HOH A 1 501 144 HOH HOH . C 3 HOH A 2 502 11 HOH HOH . C 3 HOH A 3 503 95 HOH HOH . C 3 HOH A 4 504 76 HOH HOH . C 3 HOH A 5 505 62 HOH HOH . C 3 HOH A 6 506 68 HOH HOH . C 3 HOH A 7 507 96 HOH HOH . C 3 HOH A 8 508 40 HOH HOH . C 3 HOH A 9 509 72 HOH HOH . C 3 HOH A 10 510 45 HOH HOH . C 3 HOH A 11 511 53 HOH HOH . C 3 HOH A 12 512 48 HOH HOH . C 3 HOH A 13 513 7 HOH HOH . C 3 HOH A 14 514 47 HOH HOH . C 3 HOH A 15 515 70 HOH HOH . C 3 HOH A 16 516 111 HOH HOH . C 3 HOH A 17 517 52 HOH HOH . C 3 HOH A 18 518 14 HOH HOH . C 3 HOH A 19 519 73 HOH HOH . C 3 HOH A 20 520 21 HOH HOH . C 3 HOH A 21 521 110 HOH HOH . C 3 HOH A 22 522 125 HOH HOH . C 3 HOH A 23 523 84 HOH HOH . C 3 HOH A 24 524 127 HOH HOH . C 3 HOH A 25 525 108 HOH HOH . C 3 HOH A 26 526 134 HOH HOH . C 3 HOH A 27 527 80 HOH HOH . C 3 HOH A 28 528 103 HOH HOH . C 3 HOH A 29 529 100 HOH HOH . C 3 HOH A 30 530 23 HOH HOH . C 3 HOH A 31 531 13 HOH HOH . C 3 HOH A 32 532 102 HOH HOH . C 3 HOH A 33 533 22 HOH HOH . C 3 HOH A 34 534 94 HOH HOH . C 3 HOH A 35 535 143 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 87 HOH HOH . C 3 HOH A 38 538 4 HOH HOH . C 3 HOH A 39 539 124 HOH HOH . C 3 HOH A 40 540 90 HOH HOH . C 3 HOH A 41 541 107 HOH HOH . C 3 HOH A 42 542 132 HOH HOH . C 3 HOH A 43 543 128 HOH HOH . C 3 HOH A 44 544 123 HOH HOH . C 3 HOH A 45 545 114 HOH HOH . C 3 HOH A 46 546 61 HOH HOH . C 3 HOH A 47 547 20 HOH HOH . C 3 HOH A 48 548 92 HOH HOH . C 3 HOH A 49 549 28 HOH HOH . C 3 HOH A 50 550 140 HOH HOH . C 3 HOH A 51 551 139 HOH HOH . C 3 HOH A 52 552 71 HOH HOH . C 3 HOH A 53 553 79 HOH HOH . C 3 HOH A 54 554 97 HOH HOH . C 3 HOH A 55 555 121 HOH HOH . C 3 HOH A 56 556 104 HOH HOH . C 3 HOH A 57 557 18 HOH HOH . C 3 HOH A 58 558 137 HOH HOH . C 3 HOH A 59 559 117 HOH HOH . C 3 HOH A 60 560 1 HOH HOH . C 3 HOH A 61 561 2 HOH HOH . C 3 HOH A 62 562 3 HOH HOH . C 3 HOH A 63 563 5 HOH HOH . C 3 HOH A 64 564 6 HOH HOH . C 3 HOH A 65 565 8 HOH HOH . C 3 HOH A 66 566 9 HOH HOH . C 3 HOH A 67 567 10 HOH HOH . C 3 HOH A 68 568 12 HOH HOH . C 3 HOH A 69 569 15 HOH HOH . C 3 HOH A 70 570 16 HOH HOH . C 3 HOH A 71 571 17 HOH HOH . C 3 HOH A 72 572 19 HOH HOH . C 3 HOH A 73 573 24 HOH HOH . C 3 HOH A 74 574 25 HOH HOH . C 3 HOH A 75 575 26 HOH HOH . C 3 HOH A 76 576 27 HOH HOH . C 3 HOH A 77 577 29 HOH HOH . C 3 HOH A 78 578 30 HOH HOH . C 3 HOH A 79 579 31 HOH HOH . C 3 HOH A 80 580 32 HOH HOH . C 3 HOH A 81 581 33 HOH HOH . C 3 HOH A 82 582 34 HOH HOH . C 3 HOH A 83 583 35 HOH HOH . C 3 HOH A 84 584 36 HOH HOH . C 3 HOH A 85 585 38 HOH HOH . C 3 HOH A 86 586 39 HOH HOH . C 3 HOH A 87 587 41 HOH HOH . C 3 HOH A 88 588 42 HOH HOH . C 3 HOH A 89 589 43 HOH HOH . C 3 HOH A 90 590 44 HOH HOH . C 3 HOH A 91 591 46 HOH HOH . C 3 HOH A 92 592 49 HOH HOH . C 3 HOH A 93 593 50 HOH HOH . C 3 HOH A 94 594 51 HOH HOH . C 3 HOH A 95 595 54 HOH HOH . C 3 HOH A 96 596 55 HOH HOH . C 3 HOH A 97 597 56 HOH HOH . C 3 HOH A 98 598 57 HOH HOH . C 3 HOH A 99 599 58 HOH HOH . C 3 HOH A 100 600 59 HOH HOH . C 3 HOH A 101 601 60 HOH HOH . C 3 HOH A 102 602 63 HOH HOH . C 3 HOH A 103 603 64 HOH HOH . C 3 HOH A 104 604 65 HOH HOH . C 3 HOH A 105 605 66 HOH HOH . C 3 HOH A 106 606 67 HOH HOH . C 3 HOH A 107 607 69 HOH HOH . C 3 HOH A 108 608 75 HOH HOH . C 3 HOH A 109 609 77 HOH HOH . C 3 HOH A 110 610 78 HOH HOH . C 3 HOH A 111 611 82 HOH HOH . C 3 HOH A 112 612 83 HOH HOH . C 3 HOH A 113 613 85 HOH HOH . C 3 HOH A 114 614 86 HOH HOH . C 3 HOH A 115 615 88 HOH HOH . C 3 HOH A 116 616 89 HOH HOH . C 3 HOH A 117 617 91 HOH HOH . C 3 HOH A 118 618 93 HOH HOH . C 3 HOH A 119 619 98 HOH HOH . C 3 HOH A 120 620 99 HOH HOH . C 3 HOH A 121 621 101 HOH HOH . C 3 HOH A 122 622 105 HOH HOH . C 3 HOH A 123 623 106 HOH HOH . C 3 HOH A 124 624 112 HOH HOH . C 3 HOH A 125 625 113 HOH HOH . C 3 HOH A 126 626 115 HOH HOH . C 3 HOH A 127 627 116 HOH HOH . C 3 HOH A 128 628 118 HOH HOH . C 3 HOH A 129 629 119 HOH HOH . C 3 HOH A 130 630 120 HOH HOH . C 3 HOH A 131 631 122 HOH HOH . C 3 HOH A 132 632 126 HOH HOH . C 3 HOH A 133 633 129 HOH HOH . C 3 HOH A 134 634 131 HOH HOH . C 3 HOH A 135 635 133 HOH HOH . C 3 HOH A 136 636 135 HOH HOH . C 3 HOH A 137 637 136 HOH HOH . C 3 HOH A 138 638 138 HOH HOH . C 3 HOH A 139 639 141 HOH HOH . C 3 HOH A 140 640 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.711 _atom_site.Cartn_y 20.089 _atom_site.Cartn_z 39.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #