data_4X0F # _model_server_result.job_id VpV7l4uEk_KSkTP0NQqwZA _model_server_result.datetime_utc '2024-10-18 15:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":803}' # _entry.id 4X0F # _exptl.entry_id 4X0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.343 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ROLIPRAM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X0F _cell.length_a 137.4 _cell.length_b 137.4 _cell.length_c 142.97 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 529 A CYS 610 1_555 B SG CYS 186 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc1 A NE2 HIS 329 A HIS 410 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 A NE2 HIS 365 A HIS 446 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OD2 ASP 366 A ASP 447 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc4 A OD1 ASP 366 A ASP 447 1_555 G MG MG . A MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc5 A ND1 HIS 410 A HIS 491 1_555 D ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 A OD1 ASP 483 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 A OD1 ASP 524 A ASP 605 1_555 D ZN ZN . A ZN 802 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc8 A OD2 ASP 524 A ASP 605 1_555 D ZN ZN . A ZN 802 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 A ND1 HIS 526 A HIS 607 1_555 D ZN ZN . A ZN 802 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 B NE2 HIS 329 B HIS 410 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc11 B NE2 HIS 365 B HIS 446 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 B OD2 ASP 366 B ASP 447 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc13 B OD1 ASP 366 B ASP 447 1_555 K MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc14 B OD1 ASP 483 B ASP 564 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? # _chem_comp.formula 'C16 H21 N O3' _chem_comp.formula_weight 275.343 _chem_comp.id ROL _chem_comp.mon_nstd_flag . _chem_comp.name ROLIPRAM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4R)-[3-(CYCLOPENTYLOXY)-4-METHOXYPHENYL]-2-PYRROLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 ROL doub 275 n y C5 C10 ROL sing 276 n y C5 C3 ROL sing 277 n n C6 C7 ROL sing 278 n y C6 H61 ROL sing 279 n n C7 C8 ROL doub 280 n y C7 O3 ROL sing 281 n n C8 C9 ROL sing 282 n y C8 O2 ROL sing 283 n n C9 C10 ROL doub 284 n y C9 H91 ROL sing 285 n n C10 H101 ROL sing 286 n n C3 C2 ROL sing 287 n n C3 C4 ROL sing 288 n n C3 H31 ROL sing 289 n n C2 C1 ROL sing 290 n n C2 H21 ROL sing 291 n n C2 H22 ROL sing 292 n n C1 O1 ROL doub 293 n n C1 N1 ROL sing 294 n n N1 C4 ROL sing 295 n n N1 H1 ROL sing 296 n n C4 H41 ROL sing 297 n n C4 H42 ROL sing 298 n n O3 C11 ROL sing 299 n n C11 C15 ROL sing 300 n n C11 C12 ROL sing 301 n n C11 H111 ROL sing 302 n n C15 C14 ROL sing 303 n n C15 H151 ROL sing 304 n n C15 H152 ROL sing 305 n n C14 C13 ROL sing 306 n n C14 H141 ROL sing 307 n n C14 H142 ROL sing 308 n n C13 C12 ROL sing 309 n n C13 H131 ROL sing 310 n n C13 H132 ROL sing 311 n n C12 H121 ROL sing 312 n n C12 H122 ROL sing 313 n n O2 C16 ROL sing 314 n n C16 H161 ROL sing 315 n n C16 H162 ROL sing 316 n n C16 H163 ROL sing 317 n n # _atom_sites.entry_id 4X0F _atom_sites.fract_transf_matrix[1][1] 0.007278 _atom_sites.fract_transf_matrix[1][2] 0.004202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 2 ZN A 1 802 3 ZN ZN . E 3 IOD A 1 803 1 IOD IOD . F 4 ROL A 1 804 4001 ROL PFE . G 5 MG A 1 805 1 MG MG . H 2 ZN B 1 801 2 ZN ZN . I 3 IOD B 1 802 2 IOD IOD . J 4 ROL B 1 803 4000 ROL PFE . K 5 MG B 1 804 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 ROL . . . J 4 -35.978 16.667 -18.094 1 79.6 ? C5 ROL 803 B 1 HETATM 2 C C6 ROL . . . J 4 -35.563 17.025 -19.373 1 78.45 ? C6 ROL 803 B 1 HETATM 3 C C7 ROL . . . J 4 -35.038 16.08 -20.242 1 76.72 ? C7 ROL 803 B 1 HETATM 4 C C8 ROL . . . J 4 -34.942 14.734 -19.833 1 79.23 ? C8 ROL 803 B 1 HETATM 5 C C9 ROL . . . J 4 -35.319 14.383 -18.543 1 82.87 ? C9 ROL 803 B 1 HETATM 6 C C10 ROL . . . J 4 -35.823 15.349 -17.686 1 82.5 ? C10 ROL 803 B 1 HETATM 7 C C3 ROL . . . J 4 -36.713 17.654 -17.208 1 77.52 ? C3 ROL 803 B 1 HETATM 8 C C2 ROL . . . J 4 -36.396 19.146 -17.389 1 75.8 ? C2 ROL 803 B 1 HETATM 9 C C1 ROL . . . J 4 -37.487 19.638 -18.307 1 76.82 ? C1 ROL 803 B 1 HETATM 10 O O1 ROL . . . J 4 -37.539 20.74 -18.843 1 77.72 ? O1 ROL 803 B 1 HETATM 11 N N1 ROL . . . J 4 -38.427 18.713 -18.39 1 76.95 ? N1 ROL 803 B 1 HETATM 12 C C4 ROL . . . J 4 -38.218 17.56 -17.534 1 77.23 ? C4 ROL 803 B 1 HETATM 13 O O3 ROL . . . J 4 -34.531 16.384 -21.484 1 72.25 ? O3 ROL 803 B 1 HETATM 14 C C11 ROL . . . J 4 -34.591 17.743 -22.009 1 64.48 ? C11 ROL 803 B 1 HETATM 15 C C15 ROL . . . J 4 -33.567 17.933 -23.105 1 61.11 ? C15 ROL 803 B 1 HETATM 16 C C14 ROL . . . J 4 -34.362 18.494 -24.256 1 61.41 ? C14 ROL 803 B 1 HETATM 17 C C13 ROL . . . J 4 -35.725 17.939 -24.138 1 60.77 ? C13 ROL 803 B 1 HETATM 18 C C12 ROL . . . J 4 -35.966 17.83 -22.674 1 61.65 ? C12 ROL 803 B 1 HETATM 19 O O2 ROL . . . J 4 -34.528 13.85 -20.796 1 76.59 ? O2 ROL 803 B 1 HETATM 20 C C16 ROL . . . J 4 -34.328 12.488 -20.417 1 74.12 ? C16 ROL 803 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #