data_4X0L # _model_server_result.job_id 8kP2HGirtIerLtcmfIPpJw _model_server_result.datetime_utc '2024-11-30 05:51:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 4X0L # _exptl.entry_id 4X0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X0L _cell.length_a 96.599 _cell.length_b 96.599 _cell.length_c 132.771 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG C 407 NAG 4 n D FUC 2 D 2 FUC C 408 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 2 C CYS 149 1_555 C SG CYS 119 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf2 C SG CYS 162 C CYS 309 1_555 C SG CYS 193 C CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 204 C CYS 351 1_555 C SG CYS 234 C CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C ND2 ASN 94 C ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A NE2 HIS 87 A HIS 88 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 F O1 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 E FE HEM . A HEM 201 1_555 F O2 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc4 B NE2 HIS 92 B HIS 93 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc5 G FE HEM . B HEM 201 1_555 H O2 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 395 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 4X0L _atom_sites.fract_transf_matrix[1][1] 0.010352 _atom_sites.fract_transf_matrix[1][2] 0.005977 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 201 143 HEM HEM . F 6 OXY A 1 202 144 OXY OXY . G 5 HEM B 1 201 147 HEM HEM . H 6 OXY B 1 202 148 OXY OXY . I 7 GOL B 1 203 2 GOL GOL . J 8 SO4 C 1 503 1 SO4 SO4 . K 7 GOL C 1 504 1 GOL GOL . L 9 CAC C 1 505 1 CAC CAC . M 10 HOH A 1 301 45 HOH HOH . M 10 HOH A 2 302 103 HOH HOH . M 10 HOH A 3 303 171 HOH HOH . M 10 HOH A 4 304 36 HOH HOH . M 10 HOH A 5 305 55 HOH HOH . M 10 HOH A 6 306 164 HOH HOH . M 10 HOH A 7 307 31 HOH HOH . M 10 HOH A 8 308 39 HOH HOH . M 10 HOH A 9 309 29 HOH HOH . M 10 HOH A 10 310 165 HOH HOH . M 10 HOH A 11 311 198 HOH HOH . M 10 HOH A 12 312 41 HOH HOH . M 10 HOH A 13 313 178 HOH HOH . M 10 HOH A 14 314 158 HOH HOH . M 10 HOH A 15 315 7 HOH HOH . M 10 HOH A 16 316 19 HOH HOH . M 10 HOH A 17 317 23 HOH HOH . M 10 HOH A 18 318 24 HOH HOH . M 10 HOH A 19 319 26 HOH HOH . M 10 HOH A 20 320 28 HOH HOH . M 10 HOH A 21 321 52 HOH HOH . M 10 HOH A 22 322 53 HOH HOH . M 10 HOH A 23 323 77 HOH HOH . M 10 HOH A 24 324 78 HOH HOH . M 10 HOH A 25 325 79 HOH HOH . M 10 HOH A 26 326 83 HOH HOH . M 10 HOH A 27 327 85 HOH HOH . M 10 HOH A 28 328 95 HOH HOH . M 10 HOH A 29 329 104 HOH HOH . M 10 HOH A 30 330 105 HOH HOH . M 10 HOH A 31 331 107 HOH HOH . M 10 HOH A 32 332 122 HOH HOH . M 10 HOH A 33 333 129 HOH HOH . M 10 HOH A 34 334 130 HOH HOH . M 10 HOH A 35 335 134 HOH HOH . M 10 HOH A 36 336 135 HOH HOH . M 10 HOH A 37 337 140 HOH HOH . M 10 HOH A 38 338 142 HOH HOH . M 10 HOH A 39 339 149 HOH HOH . M 10 HOH A 40 340 154 HOH HOH . M 10 HOH A 41 341 155 HOH HOH . M 10 HOH A 42 342 156 HOH HOH . M 10 HOH A 43 343 159 HOH HOH . M 10 HOH A 44 344 168 HOH HOH . M 10 HOH A 45 345 169 HOH HOH . M 10 HOH A 46 346 172 HOH HOH . M 10 HOH A 47 347 174 HOH HOH . M 10 HOH A 48 348 175 HOH HOH . M 10 HOH A 49 349 177 HOH HOH . M 10 HOH A 50 350 182 HOH HOH . M 10 HOH A 51 351 189 HOH HOH . M 10 HOH A 52 352 191 HOH HOH . M 10 HOH A 53 353 192 HOH HOH . M 10 HOH A 54 354 199 HOH HOH . M 10 HOH A 55 355 208 HOH HOH . N 10 HOH B 1 301 144 HOH HOH . N 10 HOH B 2 302 145 HOH HOH . N 10 HOH B 3 303 97 HOH HOH . N 10 HOH B 4 304 123 HOH HOH . N 10 HOH B 5 305 25 HOH HOH . N 10 HOH B 6 306 93 HOH HOH . N 10 HOH B 7 307 54 HOH HOH . N 10 HOH B 8 308 152 HOH HOH . N 10 HOH B 9 309 10 HOH HOH . N 10 HOH B 10 310 47 HOH HOH . N 10 HOH B 11 311 75 HOH HOH . N 10 HOH B 12 312 84 HOH HOH . N 10 HOH B 13 313 88 HOH HOH . N 10 HOH B 14 314 92 HOH HOH . N 10 HOH B 15 315 109 HOH HOH . N 10 HOH B 16 316 113 HOH HOH . N 10 HOH B 17 317 117 HOH HOH . N 10 HOH B 18 318 121 HOH HOH . N 10 HOH B 19 319 124 HOH HOH . N 10 HOH B 20 320 125 HOH HOH . N 10 HOH B 21 321 131 HOH HOH . N 10 HOH B 22 322 132 HOH HOH . N 10 HOH B 23 323 136 HOH HOH . N 10 HOH B 24 324 146 HOH HOH . N 10 HOH B 25 325 147 HOH HOH . N 10 HOH B 26 326 183 HOH HOH . N 10 HOH B 27 327 186 HOH HOH . N 10 HOH B 28 328 215 HOH HOH . O 10 HOH C 1 601 212 HOH HOH . O 10 HOH C 2 602 126 HOH HOH . O 10 HOH C 3 603 141 HOH HOH . O 10 HOH C 4 604 163 HOH HOH . O 10 HOH C 5 605 111 HOH HOH . O 10 HOH C 6 606 87 HOH HOH . O 10 HOH C 7 607 91 HOH HOH . O 10 HOH C 8 608 211 HOH HOH . O 10 HOH C 9 609 202 HOH HOH . O 10 HOH C 10 610 51 HOH HOH . O 10 HOH C 11 611 68 HOH HOH . O 10 HOH C 12 612 49 HOH HOH . O 10 HOH C 13 613 137 HOH HOH . O 10 HOH C 14 614 81 HOH HOH . O 10 HOH C 15 615 18 HOH HOH . O 10 HOH C 16 616 112 HOH HOH . O 10 HOH C 17 617 170 HOH HOH . O 10 HOH C 18 618 102 HOH HOH . O 10 HOH C 19 619 108 HOH HOH . O 10 HOH C 20 620 203 HOH HOH . O 10 HOH C 21 621 114 HOH HOH . O 10 HOH C 22 622 34 HOH HOH . O 10 HOH C 23 623 162 HOH HOH . O 10 HOH C 24 624 148 HOH HOH . O 10 HOH C 25 625 86 HOH HOH . O 10 HOH C 26 626 73 HOH HOH . O 10 HOH C 27 627 217 HOH HOH . O 10 HOH C 28 628 216 HOH HOH . O 10 HOH C 29 629 157 HOH HOH . O 10 HOH C 30 630 2 HOH HOH . O 10 HOH C 31 631 205 HOH HOH . O 10 HOH C 32 632 206 HOH HOH . O 10 HOH C 33 633 187 HOH HOH . O 10 HOH C 34 634 1 HOH HOH . O 10 HOH C 35 635 3 HOH HOH . O 10 HOH C 36 636 4 HOH HOH . O 10 HOH C 37 637 5 HOH HOH . O 10 HOH C 38 638 6 HOH HOH . O 10 HOH C 39 639 8 HOH HOH . O 10 HOH C 40 640 9 HOH HOH . O 10 HOH C 41 641 11 HOH HOH . O 10 HOH C 42 642 12 HOH HOH . O 10 HOH C 43 643 13 HOH HOH . O 10 HOH C 44 644 14 HOH HOH . O 10 HOH C 45 645 15 HOH HOH . O 10 HOH C 46 646 16 HOH HOH . O 10 HOH C 47 647 17 HOH HOH . O 10 HOH C 48 648 20 HOH HOH . O 10 HOH C 49 649 21 HOH HOH . O 10 HOH C 50 650 22 HOH HOH . O 10 HOH C 51 651 27 HOH HOH . O 10 HOH C 52 652 30 HOH HOH . O 10 HOH C 53 653 32 HOH HOH . O 10 HOH C 54 654 33 HOH HOH . O 10 HOH C 55 655 35 HOH HOH . O 10 HOH C 56 656 37 HOH HOH . O 10 HOH C 57 657 38 HOH HOH . O 10 HOH C 58 658 40 HOH HOH . O 10 HOH C 59 659 42 HOH HOH . O 10 HOH C 60 660 43 HOH HOH . O 10 HOH C 61 661 44 HOH HOH . O 10 HOH C 62 662 46 HOH HOH . O 10 HOH C 63 663 48 HOH HOH . O 10 HOH C 64 664 50 HOH HOH . O 10 HOH C 65 665 56 HOH HOH . O 10 HOH C 66 666 57 HOH HOH . O 10 HOH C 67 667 58 HOH HOH . O 10 HOH C 68 668 59 HOH HOH . O 10 HOH C 69 669 60 HOH HOH . O 10 HOH C 70 670 61 HOH HOH . O 10 HOH C 71 671 62 HOH HOH . O 10 HOH C 72 672 63 HOH HOH . O 10 HOH C 73 673 64 HOH HOH . O 10 HOH C 74 674 65 HOH HOH . O 10 HOH C 75 675 66 HOH HOH . O 10 HOH C 76 676 67 HOH HOH . O 10 HOH C 77 677 69 HOH HOH . O 10 HOH C 78 678 70 HOH HOH . O 10 HOH C 79 679 71 HOH HOH . O 10 HOH C 80 680 72 HOH HOH . O 10 HOH C 81 681 74 HOH HOH . O 10 HOH C 82 682 76 HOH HOH . O 10 HOH C 83 683 80 HOH HOH . O 10 HOH C 84 684 82 HOH HOH . O 10 HOH C 85 685 89 HOH HOH . O 10 HOH C 86 686 90 HOH HOH . O 10 HOH C 87 687 94 HOH HOH . O 10 HOH C 88 688 96 HOH HOH . O 10 HOH C 89 689 98 HOH HOH . O 10 HOH C 90 690 99 HOH HOH . O 10 HOH C 91 691 100 HOH HOH . O 10 HOH C 92 692 101 HOH HOH . O 10 HOH C 93 693 106 HOH HOH . O 10 HOH C 94 694 110 HOH HOH . O 10 HOH C 95 695 115 HOH HOH . O 10 HOH C 96 696 116 HOH HOH . O 10 HOH C 97 697 118 HOH HOH . O 10 HOH C 98 698 119 HOH HOH . O 10 HOH C 99 699 120 HOH HOH . O 10 HOH C 100 700 127 HOH HOH . O 10 HOH C 101 701 128 HOH HOH . O 10 HOH C 102 702 133 HOH HOH . O 10 HOH C 103 703 138 HOH HOH . O 10 HOH C 104 704 139 HOH HOH . O 10 HOH C 105 705 143 HOH HOH . O 10 HOH C 106 706 150 HOH HOH . O 10 HOH C 107 707 151 HOH HOH . O 10 HOH C 108 708 153 HOH HOH . O 10 HOH C 109 709 160 HOH HOH . O 10 HOH C 110 710 161 HOH HOH . O 10 HOH C 111 711 166 HOH HOH . O 10 HOH C 112 712 167 HOH HOH . O 10 HOH C 113 713 173 HOH HOH . O 10 HOH C 114 714 176 HOH HOH . O 10 HOH C 115 715 179 HOH HOH . O 10 HOH C 116 716 180 HOH HOH . O 10 HOH C 117 717 181 HOH HOH . O 10 HOH C 118 718 184 HOH HOH . O 10 HOH C 119 719 185 HOH HOH . O 10 HOH C 120 720 188 HOH HOH . O 10 HOH C 121 721 190 HOH HOH . O 10 HOH C 122 722 193 HOH HOH . O 10 HOH C 123 723 194 HOH HOH . O 10 HOH C 124 724 195 HOH HOH . O 10 HOH C 125 725 196 HOH HOH . O 10 HOH C 126 726 197 HOH HOH . O 10 HOH C 127 727 200 HOH HOH . O 10 HOH C 128 728 201 HOH HOH . O 10 HOH C 129 729 204 HOH HOH . O 10 HOH C 130 730 207 HOH HOH . O 10 HOH C 131 731 209 HOH HOH . O 10 HOH C 132 732 210 HOH HOH . O 10 HOH C 133 733 213 HOH HOH . O 10 HOH C 134 734 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . F 6 50.447 -22.341 2.372 1 31.48 ? O1 OXY 202 A 1 HETATM 2 O O2 OXY . . . F 6 49.392 -21.947 2.84 1 48.16 ? O2 OXY 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #