data_4X0W # _model_server_result.job_id zMbf_gok5AfcJJ5uNUhx1Q _model_server_result.datetime_utc '2024-10-15 15:21:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 4X0W # _exptl.entry_id 4X0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidine-1-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X0W _cell.length_a 120.641 _cell.length_b 120.641 _cell.length_c 42.657 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 P CYS 1 1_555 A SG CYS 10 P CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 31 U CYS 42 1_555 B SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? disulf ? disulf3 B SG CYS 39 U CYS 50 1_555 B SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 135 U CYS 136 1_555 B SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 167 U CYS 168 1_555 B SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 194 U CYS 191 1_555 B SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? covale ? covale1 A C SER 5 P SER 5 1_555 A N DAL 6 P DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A CB DAL 6 P DAL 6 1_555 C C2 MRZ . P MRZ 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? covale ? covale3 A C DAL 6 P DAL 6 1_555 A N TYR 7 P TYR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'C6 H13 N3' _chem_comp.formula_weight 127.188 _chem_comp.id MRZ _chem_comp.mon_nstd_flag . _chem_comp.name piperidine-1-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X0W _atom_sites.fract_transf_matrix[1][1] 0.008289 _atom_sites.fract_transf_matrix[1][2] 0.004786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MRZ P 1 100 100 MRZ MRZ . D 4 SO4 U 1 301 1 SO4 SO4 . E 5 HOH U 1 401 25 HOH HOH . E 5 HOH U 2 402 6 HOH HOH . E 5 HOH U 3 403 10 HOH HOH . E 5 HOH U 4 404 19 HOH HOH . E 5 HOH U 5 405 3 HOH HOH . E 5 HOH U 6 406 20 HOH HOH . E 5 HOH U 7 407 28 HOH HOH . E 5 HOH U 8 408 13 HOH HOH . E 5 HOH U 9 409 29 HOH HOH . E 5 HOH U 10 410 23 HOH HOH . E 5 HOH U 11 411 22 HOH HOH . E 5 HOH U 12 412 17 HOH HOH . E 5 HOH U 13 413 7 HOH HOH . E 5 HOH U 14 414 18 HOH HOH . E 5 HOH U 15 415 1 HOH HOH . E 5 HOH U 16 416 16 HOH HOH . E 5 HOH U 17 417 11 HOH HOH . E 5 HOH U 18 418 9 HOH HOH . E 5 HOH U 19 419 5 HOH HOH . E 5 HOH U 20 420 4 HOH HOH . E 5 HOH U 21 421 27 HOH HOH . E 5 HOH U 22 422 8 HOH HOH . E 5 HOH U 23 423 26 HOH HOH . E 5 HOH U 24 424 15 HOH HOH . E 5 HOH U 25 425 14 HOH HOH . E 5 HOH U 26 426 21 HOH HOH . E 5 HOH U 27 427 24 HOH HOH . E 5 HOH U 28 428 12 HOH HOH . E 5 HOH U 29 429 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRZ . . . C 3 -28.407 -17.247 -3.893 1 28.45 ? C1 MRZ 100 P 1 HETATM 2 C C6 MRZ . . . C 3 -29.652 -17.291 -4.849 1 34.34 ? C6 MRZ 100 P 1 HETATM 3 C C5 MRZ . . . C 3 -30.354 -18.662 -4.795 1 29.03 ? C5 MRZ 100 P 1 HETATM 4 N N4 MRZ . . . C 3 -30.768 -18.875 -3.385 1 37.92 ? N4 MRZ 100 P 1 HETATM 5 C C3 MRZ . . . C 3 -30.156 -18.29 -2.203 1 33.99 ? C3 MRZ 100 P 1 HETATM 6 C C2 MRZ . . . C 3 -28.728 -17.876 -2.518 1 36.32 ? C2 MRZ 100 P 1 HETATM 7 C C7 MRZ . . . C 3 -31.96 -19.696 -3.15 1 32.57 ? C7 MRZ 100 P 1 HETATM 8 N N8 MRZ . . . C 3 -32.08 -20.315 -1.838 1 40.04 ? N8 MRZ 100 P 1 HETATM 9 N N9 MRZ . . . C 3 -32.14 -20.725 -4.158 1 33.61 ? N9 MRZ 100 P 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #