data_4X1F
#
_model_server_result.job_id            FgeosmR3k86m126RuwNwgQ 
_model_server_result.datetime_utc      '2024-11-27 04:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4X1F 
#
_exptl.entry_id    4X1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X1F 
_cell.length_a            91.34 
_cell.length_b            91.34 
_cell.length_c            85.35 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 91.34 91.34 -42.675 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 286 n n 
C1 H11 MPD sing 287 n n 
C1 H12 MPD sing 288 n n 
C1 H13 MPD sing 289 n n 
C2 O2 MPD sing 290 n n 
C2 CM MPD sing 291 n n 
C2 C3 MPD sing 292 n n 
O2 HO2 MPD sing 293 n n 
CM HM1 MPD sing 294 n n 
CM HM2 MPD sing 295 n n 
CM HM3 MPD sing 296 n n 
C3 C4 MPD sing 297 n n 
C3 H31 MPD sing 298 n n 
C3 H32 MPD sing 299 n n 
C4 O4 MPD sing 300 n n 
C4 C5 MPD sing 301 n n 
C4 H4 MPD sing 302 n n 
O4 HO4 MPD sing 303 n n 
C5 H51 MPD sing 304 n n 
C5 H52 MPD sing 305 n n 
C5 H53 MPD sing 306 n n 
#
_atom_sites.entry_id                     4X1F 
_atom_sites.fract_transf_matrix[1][1]    0.010948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3WF A 1 501 1 3WF EE2 . 
C 3 MPD A 1 502 1 MPD MPD . 
D 3 MPD A 1 503 1 MPD MPD . 
E 4 HOH A 1 601 40 HOH HOH . 
E 4 HOH A 2 602 186 HOH HOH . 
E 4 HOH A 3 603 37 HOH HOH . 
E 4 HOH A 4 604 22 HOH HOH . 
E 4 HOH A 5 605 191 HOH HOH . 
E 4 HOH A 6 606 185 HOH HOH . 
E 4 HOH A 7 607 10 HOH HOH . 
E 4 HOH A 8 608 28 HOH HOH . 
E 4 HOH A 9 609 147 HOH HOH . 
E 4 HOH A 10 610 99 HOH HOH . 
E 4 HOH A 11 611 65 HOH HOH . 
E 4 HOH A 12 612 138 HOH HOH . 
E 4 HOH A 13 613 11 HOH HOH . 
E 4 HOH A 14 614 164 HOH HOH . 
E 4 HOH A 15 615 96 HOH HOH . 
E 4 HOH A 16 616 111 HOH HOH . 
E 4 HOH A 17 617 102 HOH HOH . 
E 4 HOH A 18 618 57 HOH HOH . 
E 4 HOH A 19 619 176 HOH HOH . 
E 4 HOH A 20 620 130 HOH HOH . 
E 4 HOH A 21 621 16 HOH HOH . 
E 4 HOH A 22 622 193 HOH HOH . 
E 4 HOH A 23 623 105 HOH HOH . 
E 4 HOH A 24 624 87 HOH HOH . 
E 4 HOH A 25 625 190 HOH HOH . 
E 4 HOH A 26 626 88 HOH HOH . 
E 4 HOH A 27 627 41 HOH HOH . 
E 4 HOH A 28 628 167 HOH HOH . 
E 4 HOH A 29 629 54 HOH HOH . 
E 4 HOH A 30 630 103 HOH HOH . 
E 4 HOH A 31 631 188 HOH HOH . 
E 4 HOH A 32 632 66 HOH HOH . 
E 4 HOH A 33 633 178 HOH HOH . 
E 4 HOH A 34 634 181 HOH HOH . 
E 4 HOH A 35 635 72 HOH HOH . 
E 4 HOH A 36 636 101 HOH HOH . 
E 4 HOH A 37 637 129 HOH HOH . 
E 4 HOH A 38 638 38 HOH HOH . 
E 4 HOH A 39 639 78 HOH HOH . 
E 4 HOH A 40 640 145 HOH HOH . 
E 4 HOH A 41 641 169 HOH HOH . 
E 4 HOH A 42 642 2 HOH HOH . 
E 4 HOH A 43 643 4 HOH HOH . 
E 4 HOH A 44 644 6 HOH HOH . 
E 4 HOH A 45 645 7 HOH HOH . 
E 4 HOH A 46 646 8 HOH HOH . 
E 4 HOH A 47 647 9 HOH HOH . 
E 4 HOH A 48 648 12 HOH HOH . 
E 4 HOH A 49 649 14 HOH HOH . 
E 4 HOH A 50 650 15 HOH HOH . 
E 4 HOH A 51 651 17 HOH HOH . 
E 4 HOH A 52 652 18 HOH HOH . 
E 4 HOH A 53 653 19 HOH HOH . 
E 4 HOH A 54 654 21 HOH HOH . 
E 4 HOH A 55 655 23 HOH HOH . 
E 4 HOH A 56 656 24 HOH HOH . 
E 4 HOH A 57 657 25 HOH HOH . 
E 4 HOH A 58 658 27 HOH HOH . 
E 4 HOH A 59 659 29 HOH HOH . 
E 4 HOH A 60 660 30 HOH HOH . 
E 4 HOH A 61 661 31 HOH HOH . 
E 4 HOH A 62 662 32 HOH HOH . 
E 4 HOH A 63 663 34 HOH HOH . 
E 4 HOH A 64 664 35 HOH HOH . 
E 4 HOH A 65 665 39 HOH HOH . 
E 4 HOH A 66 666 43 HOH HOH . 
E 4 HOH A 67 667 44 HOH HOH . 
E 4 HOH A 68 668 45 HOH HOH . 
E 4 HOH A 69 669 46 HOH HOH . 
E 4 HOH A 70 670 47 HOH HOH . 
E 4 HOH A 71 671 48 HOH HOH . 
E 4 HOH A 72 672 49 HOH HOH . 
E 4 HOH A 73 673 50 HOH HOH . 
E 4 HOH A 74 674 51 HOH HOH . 
E 4 HOH A 75 675 52 HOH HOH . 
E 4 HOH A 76 676 53 HOH HOH . 
E 4 HOH A 77 677 55 HOH HOH . 
E 4 HOH A 78 678 56 HOH HOH . 
E 4 HOH A 79 679 58 HOH HOH . 
E 4 HOH A 80 680 59 HOH HOH . 
E 4 HOH A 81 681 60 HOH HOH . 
E 4 HOH A 82 682 61 HOH HOH . 
E 4 HOH A 83 683 62 HOH HOH . 
E 4 HOH A 84 684 63 HOH HOH . 
E 4 HOH A 85 685 64 HOH HOH . 
E 4 HOH A 86 686 67 HOH HOH . 
E 4 HOH A 87 687 68 HOH HOH . 
E 4 HOH A 88 688 71 HOH HOH . 
E 4 HOH A 89 689 73 HOH HOH . 
E 4 HOH A 90 690 74 HOH HOH . 
E 4 HOH A 91 691 79 HOH HOH . 
E 4 HOH A 92 692 80 HOH HOH . 
E 4 HOH A 93 693 83 HOH HOH . 
E 4 HOH A 94 694 84 HOH HOH . 
E 4 HOH A 95 695 85 HOH HOH . 
E 4 HOH A 96 696 93 HOH HOH . 
E 4 HOH A 97 697 94 HOH HOH . 
E 4 HOH A 98 698 95 HOH HOH . 
E 4 HOH A 99 699 98 HOH HOH . 
E 4 HOH A 100 700 100 HOH HOH . 
E 4 HOH A 101 701 104 HOH HOH . 
E 4 HOH A 102 702 106 HOH HOH . 
E 4 HOH A 103 703 107 HOH HOH . 
E 4 HOH A 104 704 108 HOH HOH . 
E 4 HOH A 105 705 109 HOH HOH . 
E 4 HOH A 106 706 110 HOH HOH . 
E 4 HOH A 107 707 112 HOH HOH . 
E 4 HOH A 108 708 113 HOH HOH . 
E 4 HOH A 109 709 114 HOH HOH . 
E 4 HOH A 110 710 115 HOH HOH . 
E 4 HOH A 111 711 117 HOH HOH . 
E 4 HOH A 112 712 118 HOH HOH . 
E 4 HOH A 113 713 119 HOH HOH . 
E 4 HOH A 114 714 120 HOH HOH . 
E 4 HOH A 115 715 121 HOH HOH . 
E 4 HOH A 116 716 122 HOH HOH . 
E 4 HOH A 117 717 123 HOH HOH . 
E 4 HOH A 118 718 124 HOH HOH . 
E 4 HOH A 119 719 125 HOH HOH . 
E 4 HOH A 120 720 126 HOH HOH . 
E 4 HOH A 121 721 127 HOH HOH . 
E 4 HOH A 122 722 128 HOH HOH . 
E 4 HOH A 123 723 131 HOH HOH . 
E 4 HOH A 124 724 132 HOH HOH . 
E 4 HOH A 125 725 133 HOH HOH . 
E 4 HOH A 126 726 134 HOH HOH . 
E 4 HOH A 127 727 135 HOH HOH . 
E 4 HOH A 128 728 136 HOH HOH . 
E 4 HOH A 129 729 137 HOH HOH . 
E 4 HOH A 130 730 139 HOH HOH . 
E 4 HOH A 131 731 140 HOH HOH . 
E 4 HOH A 132 732 141 HOH HOH . 
E 4 HOH A 133 733 142 HOH HOH . 
E 4 HOH A 134 734 143 HOH HOH . 
E 4 HOH A 135 735 144 HOH HOH . 
E 4 HOH A 136 736 146 HOH HOH . 
E 4 HOH A 137 737 148 HOH HOH . 
E 4 HOH A 138 738 149 HOH HOH . 
E 4 HOH A 139 739 150 HOH HOH . 
E 4 HOH A 140 740 151 HOH HOH . 
E 4 HOH A 141 741 152 HOH HOH . 
E 4 HOH A 142 742 153 HOH HOH . 
E 4 HOH A 143 743 154 HOH HOH . 
E 4 HOH A 144 744 155 HOH HOH . 
E 4 HOH A 145 745 156 HOH HOH . 
E 4 HOH A 146 746 157 HOH HOH . 
E 4 HOH A 147 747 158 HOH HOH . 
E 4 HOH A 148 748 159 HOH HOH . 
E 4 HOH A 149 749 160 HOH HOH . 
E 4 HOH A 150 750 161 HOH HOH . 
E 4 HOH A 151 751 162 HOH HOH . 
E 4 HOH A 152 752 163 HOH HOH . 
E 4 HOH A 153 753 165 HOH HOH . 
E 4 HOH A 154 754 166 HOH HOH . 
E 4 HOH A 155 755 168 HOH HOH . 
E 4 HOH A 156 756 170 HOH HOH . 
E 4 HOH A 157 757 171 HOH HOH . 
E 4 HOH A 158 758 172 HOH HOH . 
E 4 HOH A 159 759 173 HOH HOH . 
E 4 HOH A 160 760 174 HOH HOH . 
E 4 HOH A 161 761 175 HOH HOH . 
E 4 HOH A 162 762 177 HOH HOH . 
E 4 HOH A 163 763 179 HOH HOH . 
E 4 HOH A 164 764 180 HOH HOH . 
E 4 HOH A 165 765 182 HOH HOH . 
E 4 HOH A 166 766 183 HOH HOH . 
E 4 HOH A 167 767 184 HOH HOH . 
E 4 HOH A 168 768 187 HOH HOH . 
E 4 HOH A 169 769 189 HOH HOH . 
E 4 HOH A 170 770 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 4.123 57.017 -4.714 1 29.17 ? C1 MPD 502 A 1 
HETATM 2 C C2 MPD . . . C 3 4.392 56.243 -3.424 1 35.7 ? C2 MPD 502 A 1 
HETATM 3 O O2 MPD . . . C 3 5.822 56.239 -3.14 1 32.18 ? O2 MPD 502 A 1 
HETATM 4 C CM MPD . . . C 3 3.683 56.923 -2.252 1 28.47 ? CM MPD 502 A 1 
HETATM 5 C C3 MPD . . . C 3 3.884 54.806 -3.536 1 35.99 ? C3 MPD 502 A 1 
HETATM 6 C C4 MPD . . . C 3 4.496 54.033 -4.705 1 51.99 ? C4 MPD 502 A 1 
HETATM 7 O O4 MPD . . . C 3 5.817 53.656 -4.389 1 61.22 ? O4 MPD 502 A 1 
HETATM 8 C C5 MPD . . . C 3 3.686 52.773 -5.004 1 44.83 ? C5 MPD 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#