data_4X1I
#
_model_server_result.job_id            s_C9kHNO1HUEe6J9VLKgQQ 
_model_server_result.datetime_utc      '2025-04-21 16:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    4X1I 
#
_exptl.entry_id    4X1I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.437 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X1I 
_cell.length_a            66.14 
_cell.length_b            128.21 
_cell.length_c            255.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
#
_chem_comp.formula           'C22 H25 N O6' 
_chem_comp.formula_weight    399.437 
_chem_comp.id                LOC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     COLCHICINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C12 LOC doub 403 n n 
C12 C13 LOC sing 404 n n 
C12 N1 LOC sing 405 n n 
N1 C11 LOC sing 406 n n 
C11 C14 LOC sing 407 n n 
C11 C10 LOC sing 408 n n 
C14 C15 LOC doub 409 n n 
C14 C21 LOC sing 410 n n 
C15 C16 LOC sing 411 n n 
C10 C9 LOC sing 412 n n 
C9 C8 LOC sing 413 n n 
C8 C7 LOC doub 414 n y 
C8 C22 LOC sing 415 n y 
C7 C5 LOC sing 416 n y 
C5 C3 LOC doub 417 n y 
C5 O3 LOC sing 418 n n 
C3 C1 LOC sing 419 n y 
C3 O2 LOC sing 420 n n 
C1 O1 LOC sing 421 n n 
C1 C22 LOC doub 422 n y 
O1 C2 LOC sing 423 n n 
O2 C4 LOC sing 424 n n 
O3 C6 LOC sing 425 n n 
C22 C21 LOC sing 426 n n 
C21 C20 LOC doub 427 n n 
C20 C19 LOC sing 428 n n 
C19 C17 LOC doub 429 n n 
C17 C16 LOC sing 430 n n 
C17 O6 LOC sing 431 n n 
C16 O5 LOC doub 432 n n 
O6 C18 LOC sing 433 n n 
C13 H13 LOC sing 434 n n 
C13 H13A LOC sing 435 n n 
C13 H13B LOC sing 436 n n 
N1 HN1 LOC sing 437 n n 
C11 H11 LOC sing 438 n n 
C15 H15 LOC sing 439 n n 
C10 H10 LOC sing 440 n n 
C10 H10A LOC sing 441 n n 
C9 H9 LOC sing 442 n n 
C9 H9A LOC sing 443 n n 
C7 H7 LOC sing 444 n n 
C2 H2 LOC sing 445 n n 
C2 H2A LOC sing 446 n n 
C2 H2B LOC sing 447 n n 
C4 H4 LOC sing 448 n n 
C4 H4A LOC sing 449 n n 
C4 H4B LOC sing 450 n n 
C6 H6 LOC sing 451 n n 
C6 H6A LOC sing 452 n n 
C6 H6B LOC sing 453 n n 
C20 H20 LOC sing 454 n n 
C19 H19 LOC sing 455 n n 
C18 H18 LOC sing 456 n n 
C18 H18A LOC sing 457 n n 
C18 H18B LOC sing 458 n n 
#
_atom_sites.entry_id                     4X1I 
_atom_sites.fract_transf_matrix[1][1]    0.015119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 GDP B 1 501 600 GDP GDP . 
I 7 LOC B 1 502 601 LOC PFE . 
J 8 3WD B 1 503 1 3WD 101 . 
K 4 GTP C 1 600 600 GTP GTP . 
L 5 MG C 1 601 601 MG MG . 
M 6 GDP D 1 501 600 GDP GDP . 
N 7 LOC D 1 502 601 LOC PFE . 
O 8 3WD D 1 503 1 3WD 101 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 LOC . . . N 7 -16.981 129.676 116.665 1 92.31 ? O4 LOC 502 D 1 
HETATM 2 C C12 LOC . . . N 7 -17.24 128.742 115.91 1 88.83 ? C12 LOC 502 D 1 
HETATM 3 C C13 LOC . . . N 7 -16.346 127.542 115.797 1 86.77 ? C13 LOC 502 D 1 
HETATM 4 N N1 LOC . . . N 7 -18.348 128.728 115.151 1 86.38 ? N1 LOC 502 D 1 
HETATM 5 C C11 LOC . . . N 7 -19.379 129.744 115.297 1 83.6 ? C11 LOC 502 D 1 
HETATM 6 C C14 LOC . . . N 7 -20.189 129.607 116.61 1 84.74 ? C14 LOC 502 D 1 
HETATM 7 C C15 LOC . . . N 7 -20.34 128.337 117.084 1 86.1 ? C15 LOC 502 D 1 
HETATM 8 C C10 LOC . . . N 7 -20.347 129.774 114.103 1 80.6 ? C10 LOC 502 D 1 
HETATM 9 C C9 LOC . . . N 7 -21.486 130.798 114.247 1 76.6 ? C9 LOC 502 D 1 
HETATM 10 C C8 LOC . . . N 7 -21.085 132.082 114.936 1 77.65 ? C8 LOC 502 D 1 
HETATM 11 C C7 LOC . . . N 7 -21.075 133.272 114.215 1 77.01 ? C7 LOC 502 D 1 
HETATM 12 C C5 LOC . . . N 7 -20.664 134.458 114.797 1 75.56 ? C5 LOC 502 D 1 
HETATM 13 C C3 LOC . . . N 7 -20.251 134.482 116.136 1 80.1 ? C3 LOC 502 D 1 
HETATM 14 C C1 LOC . . . N 7 -20.199 133.28 116.871 1 80.82 ? C1 LOC 502 D 1 
HETATM 15 O O1 LOC . . . N 7 -19.626 133.297 118.131 1 78.76 ? O1 LOC 502 D 1 
HETATM 16 C C2 LOC . . . N 7 -18.212 133.098 118.18 1 79.11 ? C2 LOC 502 D 1 
HETATM 17 O O2 LOC . . . N 7 -19.941 135.689 116.743 1 81.64 ? O2 LOC 502 D 1 
HETATM 18 C C4 LOC . . . N 7 -21.04 136.527 117.107 1 80.26 ? C4 LOC 502 D 1 
HETATM 19 O O3 LOC . . . N 7 -20.598 135.658 114.148 1 73.09 ? O3 LOC 502 D 1 
HETATM 20 C C6 LOC . . . N 7 -20.925 135.681 112.771 1 77.64 ? C6 LOC 502 D 1 
HETATM 21 C C22 LOC . . . N 7 -20.66 132.068 116.291 1 81.94 ? C22 LOC 502 D 1 
HETATM 22 C C21 LOC . . . N 7 -20.8 130.814 117.1 1 84.82 ? C21 LOC 502 D 1 
HETATM 23 C C20 LOC . . . N 7 -21.58 130.896 118.23 1 85.47 ? C20 LOC 502 D 1 
HETATM 24 C C19 LOC . . . N 7 -21.946 129.915 119.195 1 85.52 ? C19 LOC 502 D 1 
HETATM 25 C C17 LOC . . . N 7 -21.692 128.576 119.236 1 87.17 ? C17 LOC 502 D 1 
HETATM 26 C C16 LOC . . . N 7 -20.99 127.756 118.229 1 86.95 ? C16 LOC 502 D 1 
HETATM 27 O O5 LOC . . . N 7 -21.031 126.52 118.32 1 87.23 ? O5 LOC 502 D 1 
HETATM 28 O O6 LOC . . . N 7 -21.998 127.797 120.315 1 88.55 ? O6 LOC 502 D 1 
HETATM 29 C C18 LOC . . . N 7 -22.655 128.404 121.455 1 87.89 ? C18 LOC 502 D 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#