data_4X1I # _model_server_result.job_id L2HNR3Kc7T4abbpj2eUhWA _model_server_result.datetime_utc '2024-11-14 06:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 4X1I # _exptl.entry_id 4X1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.011 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-L-alanyl-N-[(3R,4S,5S)-3-methoxy-1-{(2S)-2-[(1R,2R)-1-methoxy-2-methyl-3-oxo-3-{[(1S)-2-phenyl-1-(1,3-thiazol-2-yl)ethyl]amino}propyl]pyrrolidin-1-yl}-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1I _cell.length_a 66.14 _cell.length_b 128.21 _cell.length_c 255.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? # _chem_comp.formula 'C39 H62 N6 O6 S' _chem_comp.formula_weight 743.011 _chem_comp.id 3WD _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-L-alanyl-N-[(3R,4S,5S)-3-methoxy-1-{(2S)-2-[(1R,2R)-1-methoxy-2-methyl-3-oxo-3-{[(1S)-2-phenyl-1-(1,3-thiazol-2-yl)ethyl]amino}propyl]pyrrolidin-1-yl}-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 N6 3WD sing 1 n y C39 C38 3WD doub 2 n y N6 C32 3WD doub 3 n y C36 C35 3WD doub 4 n y C36 C37 3WD sing 5 n y C35 C34 3WD sing 6 n y C37 C31 3WD doub 7 n y C34 C33 3WD doub 8 n y C31 C33 3WD sing 9 n y C31 C30 3WD sing 10 n n C30 C29 3WD sing 11 n n C38 S1 3WD sing 12 n y C32 C29 3WD sing 13 n n C32 S1 3WD sing 14 n y C29 N2 3WD sing 15 n n N2 C8 3WD sing 16 n n C8 O2 3WD doub 17 n n C8 C7 3WD sing 18 n n C2 C3 3WD sing 19 n n C2 C1 3WD sing 20 n n C7 C9 3WD sing 21 n n C7 C6 3WD sing 22 n n C25 O1 3WD sing 23 n n C3 C4 3WD sing 24 n n C1 C6 3WD sing 25 n n C1 N1 3WD sing 26 n n C6 O1 3WD sing 27 n n C4 N1 3WD sing 28 n n N1 C5 3WD sing 29 n n C5 O4 3WD doub 30 n n C5 C10 3WD sing 31 n n C10 C11 3WD sing 32 n n C11 O3 3WD sing 33 n n C11 C12 3WD sing 34 n n C19 C16 3WD sing 35 n n O3 C24 3WD sing 36 n n C12 C16 3WD sing 37 n n C12 N3 3WD sing 38 n n C16 C17 3WD sing 39 n n C17 C18 3WD sing 40 n n C21 C20 3WD sing 41 n n N3 C23 3WD sing 42 n n N3 C13 3WD sing 43 n n C20 C14 3WD sing 44 n n C20 C22 3WD sing 45 n n C14 C13 3WD sing 46 n n C14 N4 3WD sing 47 n n C13 O5 3WD doub 48 n n O6 C15 3WD doub 49 n n N4 C15 3WD sing 50 n n C15 C26 3WD sing 51 n n C26 N5 3WD sing 52 n n C26 C27 3WD sing 53 n n C26 C28 3WD sing 54 n n C6 H1 3WD sing 55 n n C2 H2 3WD sing 56 n n C2 H3 3WD sing 57 n n C4 H4 3WD sing 58 n n C4 H5 3WD sing 59 n n C1 H6 3WD sing 60 n n C3 H7 3WD sing 61 n n C3 H8 3WD sing 62 n n C7 H9 3WD sing 63 n n N2 H10 3WD sing 64 n n C9 H11 3WD sing 65 n n C9 H12 3WD sing 66 n n C9 H13 3WD sing 67 n n C10 H14 3WD sing 68 n n C10 H15 3WD sing 69 n n C11 H16 3WD sing 70 n n C12 H17 3WD sing 71 n n C14 H18 3WD sing 72 n n N4 H19 3WD sing 73 n n C16 H20 3WD sing 74 n n C17 H21 3WD sing 75 n n C17 H22 3WD sing 76 n n C18 H23 3WD sing 77 n n C18 H24 3WD sing 78 n n C18 H25 3WD sing 79 n n C19 H26 3WD sing 80 n n C19 H27 3WD sing 81 n n C19 H28 3WD sing 82 n n C20 H29 3WD sing 83 n n C21 H30 3WD sing 84 n n C21 H31 3WD sing 85 n n C21 H32 3WD sing 86 n n C22 H33 3WD sing 87 n n C22 H34 3WD sing 88 n n C22 H35 3WD sing 89 n n C23 H36 3WD sing 90 n n C23 H37 3WD sing 91 n n C23 H38 3WD sing 92 n n C24 H39 3WD sing 93 n n C24 H40 3WD sing 94 n n C24 H41 3WD sing 95 n n C25 H42 3WD sing 96 n n C25 H43 3WD sing 97 n n C25 H44 3WD sing 98 n n N5 H45 3WD sing 99 n n N5 H46 3WD sing 100 n n C27 H48 3WD sing 101 n n C27 H49 3WD sing 102 n n C27 H50 3WD sing 103 n n C28 H51 3WD sing 104 n n C28 H52 3WD sing 105 n n C28 H53 3WD sing 106 n n C29 H54 3WD sing 107 n n C30 H55 3WD sing 108 n n C30 H56 3WD sing 109 n n C33 H57 3WD sing 110 n n C34 H58 3WD sing 111 n n C35 H59 3WD sing 112 n n C36 H60 3WD sing 113 n n C37 H61 3WD sing 114 n n C38 H62 3WD sing 115 n n C39 H63 3WD sing 116 n n # _atom_sites.entry_id 4X1I _atom_sites.fract_transf_matrix[1][1] 0.015119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC PFE . J 8 3WD B 1 503 1 3WD 101 . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC PFE . O 8 3WD D 1 503 1 3WD 101 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 3WD . . . J 8 4.667 89.343 108.793 1 107.69 ? N5 3WD 503 B 1 HETATM 2 C C26 3WD . . . J 8 6.028 88.809 108.759 1 108.13 ? C26 3WD 503 B 1 HETATM 3 C C15 3WD . . . J 8 6.592 88.853 107.274 1 109.02 ? C15 3WD 503 B 1 HETATM 4 O O6 3WD . . . J 8 6.164 88.062 106.44 1 110.48 ? O6 3WD 503 B 1 HETATM 5 C C27 3WD . . . J 8 6.012 87.338 109.232 1 108.29 ? C27 3WD 503 B 1 HETATM 6 C C28 3WD . . . J 8 6.902 89.684 109.697 1 107.9 ? C28 3WD 503 B 1 HETATM 7 N N4 3WD . . . J 8 7.523 89.786 107.02 1 108.61 ? N4 3WD 503 B 1 HETATM 8 C C14 3WD . . . J 8 8.258 89.886 105.765 1 107.69 ? C14 3WD 503 B 1 HETATM 9 C C13 3WD . . . J 8 9.547 89.078 105.965 1 114.59 ? C13 3WD 503 B 1 HETATM 10 O O5 3WD . . . J 8 10.309 89.475 106.826 1 116.39 ? O5 3WD 503 B 1 HETATM 11 C C20 3WD . . . J 8 8.517 91.37 105.389 1 101.33 ? C20 3WD 503 B 1 HETATM 12 C C21 3WD . . . J 8 9.385 91.536 104.162 1 101.46 ? C21 3WD 503 B 1 HETATM 13 C C22 3WD . . . J 8 9 92.266 106.537 1 95.31 ? C22 3WD 503 B 1 HETATM 14 N N3 3WD . . . J 8 9.861 87.983 105.222 1 118.09 ? N3 3WD 503 B 1 HETATM 15 C C11 3WD . . . J 8 10.234 88.013 102.637 1 108.84 ? C11 3WD 503 B 1 HETATM 16 C C16 3WD . . . J 8 7.774 87.203 103.851 1 109.94 ? C16 3WD 503 B 1 HETATM 17 C C12 3WD . . . J 8 9.355 87.426 103.851 1 113.19 ? C12 3WD 503 B 1 HETATM 18 C C10 3WD . . . J 8 9.61 88.195 101.251 1 111.68 ? C10 3WD 503 B 1 HETATM 19 C C5 3WD . . . J 8 10.596 88.49 100.145 1 115.27 ? C5 3WD 503 B 1 HETATM 20 O O3 3WD . . . J 8 10.964 89.18 103.023 1 103.82 ? O3 3WD 503 B 1 HETATM 21 O O4 3WD . . . J 8 11.743 88.092 100.241 1 119.18 ? O4 3WD 503 B 1 HETATM 22 C C17 3WD . . . J 8 7.398 85.729 104.019 1 104.12 ? C17 3WD 503 B 1 HETATM 23 C C18 3WD . . . J 8 7.581 85.2 105.421 1 101.2 ? C18 3WD 503 B 1 HETATM 24 C C19 3WD . . . J 8 6.874 87.92 102.851 1 111.94 ? C19 3WD 503 B 1 HETATM 25 C C23 3WD . . . J 8 10.779 87.016 105.835 1 119.58 ? C23 3WD 503 B 1 HETATM 26 C C24 3WD . . . J 8 12.352 88.969 103.283 1 101.77 ? C24 3WD 503 B 1 HETATM 27 C C3 3WD . . . J 8 9.139 90.761 97.693 1 110.88 ? C3 3WD 503 B 1 HETATM 28 C C9 3WD . . . J 8 14.974 89.114 97.645 1 114.89 ? C9 3WD 503 B 1 HETATM 29 C C7 3WD . . . J 8 13.591 89.398 97.063 1 114.1 ? C7 3WD 503 B 1 HETATM 30 C C25 3WD . . . J 8 12.967 92.09 97.223 1 108.02 ? C25 3WD 503 B 1 HETATM 31 C C8 3WD . . . J 8 13.137 88.246 96.154 1 117.7 ? C8 3WD 503 B 1 HETATM 32 N N1 3WD . . . J 8 10.204 89.157 99.014 1 113.32 ? N1 3WD 503 B 1 HETATM 33 C C1 3WD . . . J 8 11.089 89.355 97.856 1 110.7 ? C1 3WD 503 B 1 HETATM 34 C C2 3WD . . . J 8 10.193 90.1 96.852 1 109.24 ? C2 3WD 503 B 1 HETATM 35 C C4 3WD . . . J 8 8.884 89.773 98.801 1 112.29 ? C4 3WD 503 B 1 HETATM 36 C C6 3WD . . . J 8 12.515 89.856 98.086 1 110.66 ? C6 3WD 503 B 1 HETATM 37 O O1 3WD . . . J 8 12.629 91.254 98.345 1 108.34 ? O1 3WD 503 B 1 HETATM 38 O O2 3WD . . . J 8 13.294 87.055 96.433 1 115.25 ? O2 3WD 503 B 1 HETATM 39 N N6 3WD . . . J 8 9.904 88.83 92.897 1 130.64 ? N6 3WD 503 B 1 HETATM 40 N N2 3WD . . . J 8 12.547 88.719 95.036 1 124.27 ? N2 3WD 503 B 1 HETATM 41 C C29 3WD . . . J 8 12.016 87.998 93.872 1 126.75 ? C29 3WD 503 B 1 HETATM 42 C C30 3WD . . . J 8 12.752 86.682 93.564 1 126.55 ? C30 3WD 503 B 1 HETATM 43 C C31 3WD . . . J 8 14.238 86.858 93.361 1 127.77 ? C31 3WD 503 B 1 HETATM 44 C C32 3WD . . . J 8 10.465 87.966 93.686 1 128.99 ? C32 3WD 503 B 1 HETATM 45 C C33 3WD . . . J 8 15.089 85.762 93.388 1 128.08 ? C33 3WD 503 B 1 HETATM 46 C C34 3WD . . . J 8 16.463 85.929 93.308 1 129.86 ? C34 3WD 503 B 1 HETATM 47 C C35 3WD . . . J 8 17.003 87.195 93.194 1 131.62 ? C35 3WD 503 B 1 HETATM 48 C C36 3WD . . . J 8 16.169 88.291 93.143 1 131.39 ? C36 3WD 503 B 1 HETATM 49 C C37 3WD . . . J 8 14.797 88.124 93.215 1 129.73 ? C37 3WD 503 B 1 HETATM 50 S S1 3WD . . . J 8 9.353 86.885 94.461 1 128.05 ? S1 3WD 503 B 1 HETATM 51 C C38 3WD . . . J 8 8.065 87.674 93.668 1 129.65 ? C38 3WD 503 B 1 HETATM 52 C C39 3WD . . . J 8 8.536 88.657 92.896 1 130.82 ? C39 3WD 503 B 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 158 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 52 #