data_4X1I
#
_model_server_result.job_id            NrjO-8lRmEP6KaCfmTo6ug 
_model_server_result.datetime_utc      '2025-06-23 22:38:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":503}' 
#
_entry.id    4X1I 
#
_exptl.entry_id    4X1I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.011 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-methyl-L-alanyl-N-[(3R,4S,5S)-3-methoxy-1-{(2S)-2-[(1R,2R)-1-methoxy-2-methyl-3-oxo-3-{[(1S)-2-phenyl-1-(1,3-thiazol-2-yl)ethyl]amino}propyl]pyrrolidin-1-yl}-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X1I 
_cell.length_a            66.14 
_cell.length_b            128.21 
_cell.length_c            255.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
#
_chem_comp.formula           'C39 H62 N6 O6 S' 
_chem_comp.formula_weight    743.011 
_chem_comp.id                3WD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-methyl-L-alanyl-N-[(3R,4S,5S)-3-methoxy-1-{(2S)-2-[(1R,2R)-1-methoxy-2-methyl-3-oxo-3-{[(1S)-2-phenyl-1-(1,3-thiazol-2-yl)ethyl]amino}propyl]pyrrolidin-1-yl}-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C39 N6 3WD sing 1 n y 
C39 C38 3WD doub 2 n y 
N6 C32 3WD doub 3 n y 
C36 C35 3WD doub 4 n y 
C36 C37 3WD sing 5 n y 
C35 C34 3WD sing 6 n y 
C37 C31 3WD doub 7 n y 
C34 C33 3WD doub 8 n y 
C31 C33 3WD sing 9 n y 
C31 C30 3WD sing 10 n n 
C30 C29 3WD sing 11 n n 
C38 S1 3WD sing 12 n y 
C32 C29 3WD sing 13 n n 
C32 S1 3WD sing 14 n y 
C29 N2 3WD sing 15 n n 
N2 C8 3WD sing 16 n n 
C8 O2 3WD doub 17 n n 
C8 C7 3WD sing 18 n n 
C2 C3 3WD sing 19 n n 
C2 C1 3WD sing 20 n n 
C7 C9 3WD sing 21 n n 
C7 C6 3WD sing 22 n n 
C25 O1 3WD sing 23 n n 
C3 C4 3WD sing 24 n n 
C1 C6 3WD sing 25 n n 
C1 N1 3WD sing 26 n n 
C6 O1 3WD sing 27 n n 
C4 N1 3WD sing 28 n n 
N1 C5 3WD sing 29 n n 
C5 O4 3WD doub 30 n n 
C5 C10 3WD sing 31 n n 
C10 C11 3WD sing 32 n n 
C11 O3 3WD sing 33 n n 
C11 C12 3WD sing 34 n n 
C19 C16 3WD sing 35 n n 
O3 C24 3WD sing 36 n n 
C12 C16 3WD sing 37 n n 
C12 N3 3WD sing 38 n n 
C16 C17 3WD sing 39 n n 
C17 C18 3WD sing 40 n n 
C21 C20 3WD sing 41 n n 
N3 C23 3WD sing 42 n n 
N3 C13 3WD sing 43 n n 
C20 C14 3WD sing 44 n n 
C20 C22 3WD sing 45 n n 
C14 C13 3WD sing 46 n n 
C14 N4 3WD sing 47 n n 
C13 O5 3WD doub 48 n n 
O6 C15 3WD doub 49 n n 
N4 C15 3WD sing 50 n n 
C15 C26 3WD sing 51 n n 
C26 N5 3WD sing 52 n n 
C26 C27 3WD sing 53 n n 
C26 C28 3WD sing 54 n n 
C6 H1 3WD sing 55 n n 
C2 H2 3WD sing 56 n n 
C2 H3 3WD sing 57 n n 
C4 H4 3WD sing 58 n n 
C4 H5 3WD sing 59 n n 
C1 H6 3WD sing 60 n n 
C3 H7 3WD sing 61 n n 
C3 H8 3WD sing 62 n n 
C7 H9 3WD sing 63 n n 
N2 H10 3WD sing 64 n n 
C9 H11 3WD sing 65 n n 
C9 H12 3WD sing 66 n n 
C9 H13 3WD sing 67 n n 
C10 H14 3WD sing 68 n n 
C10 H15 3WD sing 69 n n 
C11 H16 3WD sing 70 n n 
C12 H17 3WD sing 71 n n 
C14 H18 3WD sing 72 n n 
N4 H19 3WD sing 73 n n 
C16 H20 3WD sing 74 n n 
C17 H21 3WD sing 75 n n 
C17 H22 3WD sing 76 n n 
C18 H23 3WD sing 77 n n 
C18 H24 3WD sing 78 n n 
C18 H25 3WD sing 79 n n 
C19 H26 3WD sing 80 n n 
C19 H27 3WD sing 81 n n 
C19 H28 3WD sing 82 n n 
C20 H29 3WD sing 83 n n 
C21 H30 3WD sing 84 n n 
C21 H31 3WD sing 85 n n 
C21 H32 3WD sing 86 n n 
C22 H33 3WD sing 87 n n 
C22 H34 3WD sing 88 n n 
C22 H35 3WD sing 89 n n 
C23 H36 3WD sing 90 n n 
C23 H37 3WD sing 91 n n 
C23 H38 3WD sing 92 n n 
C24 H39 3WD sing 93 n n 
C24 H40 3WD sing 94 n n 
C24 H41 3WD sing 95 n n 
C25 H42 3WD sing 96 n n 
C25 H43 3WD sing 97 n n 
C25 H44 3WD sing 98 n n 
N5 H45 3WD sing 99 n n 
N5 H46 3WD sing 100 n n 
C27 H48 3WD sing 101 n n 
C27 H49 3WD sing 102 n n 
C27 H50 3WD sing 103 n n 
C28 H51 3WD sing 104 n n 
C28 H52 3WD sing 105 n n 
C28 H53 3WD sing 106 n n 
C29 H54 3WD sing 107 n n 
C30 H55 3WD sing 108 n n 
C30 H56 3WD sing 109 n n 
C33 H57 3WD sing 110 n n 
C34 H58 3WD sing 111 n n 
C35 H59 3WD sing 112 n n 
C36 H60 3WD sing 113 n n 
C37 H61 3WD sing 114 n n 
C38 H62 3WD sing 115 n n 
C39 H63 3WD sing 116 n n 
#
_atom_sites.entry_id                     4X1I 
_atom_sites.fract_transf_matrix[1][1]    0.015119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 GDP B 1 501 600 GDP GDP . 
I 7 LOC B 1 502 601 LOC PFE . 
J 8 3WD B 1 503 1 3WD 101 . 
K 4 GTP C 1 600 600 GTP GTP . 
L 5 MG C 1 601 601 MG MG . 
M 6 GDP D 1 501 600 GDP GDP . 
N 7 LOC D 1 502 601 LOC PFE . 
O 8 3WD D 1 503 1 3WD 101 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N5 3WD . . . O 8 -38.872 159.353 133.875 1 135.05 ? N5 3WD 503 D 1 
HETATM 2 C C26 3WD . . . O 8 -38.201 160.42 134.657 1 134.98 ? C26 3WD 503 D 1 
HETATM 3 C C15 3WD . . . O 8 -38.019 161.657 133.709 1 134.99 ? C15 3WD 503 D 1 
HETATM 4 O O6 3WD . . . O 8 -38.809 161.849 132.793 1 133.75 ? O6 3WD 503 D 1 
HETATM 5 C C27 3WD . . . O 8 -36.844 159.911 135.201 1 135.05 ? C27 3WD 503 D 1 
HETATM 6 C C28 3WD . . . O 8 -39.08 160.894 135.825 1 134.72 ? C28 3WD 503 D 1 
HETATM 7 N N4 3WD . . . O 8 -36.971 162.455 133.951 1 136.64 ? N4 3WD 503 D 1 
HETATM 8 C C14 3WD . . . O 8 -36.512 163.419 132.966 1 138.26 ? C14 3WD 503 D 1 
HETATM 9 C C13 3WD . . . O 8 -35.667 162.723 131.886 1 139.62 ? C13 3WD 503 D 1 
HETATM 10 O O5 3WD . . . O 8 -36.206 162.589 130.8 1 141.59 ? O5 3WD 503 D 1 
HETATM 11 C C20 3WD . . . O 8 -35.958 164.761 133.517 1 138.45 ? C20 3WD 503 D 1 
HETATM 12 C C21 3WD . . . O 8 -35.125 165.551 132.505 1 138.84 ? C21 3WD 503 D 1 
HETATM 13 C C22 3WD . . . O 8 -35.244 164.654 134.865 1 138.6 ? C22 3WD 503 D 1 
HETATM 14 N N3 3WD . . . O 8 -34.426 162.209 132.118 1 136.86 ? N3 3WD 503 D 1 
HETATM 15 C C11 3WD . . . O 8 -32.955 162.598 129.975 1 130.39 ? C11 3WD 503 D 1 
HETATM 16 C C16 3WD . . . O 8 -34.131 160.183 130.352 1 122.31 ? C16 3WD 503 D 1 
HETATM 17 C C12 3WD . . . O 8 -33.57 161.533 130.986 1 130.55 ? C12 3WD 503 D 1 
HETATM 18 C C10 3WD . . . O 8 -33.833 162.875 128.753 1 130.66 ? C10 3WD 503 D 1 
HETATM 19 C C5 3WD . . . O 8 -33.177 162.65 127.411 1 130.43 ? C5 3WD 503 D 1 
HETATM 20 O O3 3WD . . . O 8 -32.625 163.806 130.664 1 129.31 ? O3 3WD 503 D 1 
HETATM 21 O O4 3WD . . . O 8 -32.111 162.072 127.326 1 128.91 ? O4 3WD 503 D 1 
HETATM 22 C C17 3WD . . . O 8 -34.991 159.34 131.295 1 119.72 ? C17 3WD 503 D 1 
HETATM 23 C C18 3WD . . . O 8 -34.271 158.828 132.526 1 118.82 ? C18 3WD 503 D 1 
HETATM 24 C C19 3WD . . . O 8 -33.142 159.336 129.552 1 118.9 ? C19 3WD 503 D 1 
HETATM 25 C C23 3WD . . . O 8 -33.678 162.128 133.377 1 137.45 ? C23 3WD 503 D 1 
HETATM 26 C C24 3WD . . . O 8 -31.266 163.892 131.077 1 128.59 ? C24 3WD 503 D 1 
HETATM 27 C C3 3WD . . . O 8 -35.18 164.592 125.056 1 132.51 ? C3 3WD 503 D 1 
HETATM 28 C C9 3WD . . . O 8 -29.588 166.094 125.263 1 135.63 ? C9 3WD 503 D 1 
HETATM 29 C C7 3WD . . . O 8 -30.735 165.232 124.736 1 135.48 ? C7 3WD 503 D 1 
HETATM 30 C C25 3WD . . . O 8 -32.505 166.341 127.63 1 128.55 ? C25 3WD 503 D 1 
HETATM 31 C C8 3WD . . . O 8 -30.109 163.918 124.149 1 138.81 ? C8 3WD 503 D 1 
HETATM 32 N N1 3WD . . . O 8 -33.691 163.37 126.387 1 132.45 ? N1 3WD 503 D 1 
HETATM 33 C C1 3WD . . . O 8 -32.868 163.915 125.301 1 132.72 ? C1 3WD 503 D 1 
HETATM 34 C C2 3WD . . . O 8 -33.91 164.392 124.274 1 132.07 ? C2 3WD 503 D 1 
HETATM 35 C C4 3WD . . . O 8 -35.133 163.553 126.144 1 132.99 ? C4 3WD 503 D 1 
HETATM 36 C C6 3WD . . . O 8 -31.828 164.922 125.795 1 133.26 ? C6 3WD 503 D 1 
HETATM 37 O O1 3WD . . . O 8 -32.42 166.153 126.216 1 131.01 ? O1 3WD 503 D 1 
HETATM 38 O O2 3WD . . . O 8 -29.424 163.137 124.806 1 139.62 ? O2 3WD 503 D 1 
HETATM 39 N N6 3WD . . . O 8 -27.926 164.431 121.848 1 146.77 ? N6 3WD 503 D 1 
HETATM 40 N N2 3WD . . . O 8 -30.385 163.734 122.855 1 140.97 ? N2 3WD 503 D 1 
HETATM 41 C C29 3WD . . . O 8 -29.734 162.711 122.05 1 141.79 ? C29 3WD 503 D 1 
HETATM 42 C C30 3WD . . . O 8 -30.566 162.392 120.793 1 138.92 ? C30 3WD 503 D 1 
HETATM 43 C C31 3WD . . . O 8 -31.985 161.963 121.089 1 138.09 ? C31 3WD 503 D 1 
HETATM 44 C C32 3WD . . . O 8 -28.315 163.204 121.684 1 145.72 ? C32 3WD 503 D 1 
HETATM 45 C C33 3WD . . . O 8 -33.017 162.895 121.137 1 137.93 ? C33 3WD 503 D 1 
HETATM 46 C C34 3WD . . . O 8 -34.319 162.501 121.424 1 136.56 ? C34 3WD 503 D 1 
HETATM 47 C C35 3WD . . . O 8 -34.605 161.175 121.668 1 135.93 ? C35 3WD 503 D 1 
HETATM 48 C C36 3WD . . . O 8 -33.597 160.238 121.608 1 136.82 ? C36 3WD 503 D 1 
HETATM 49 C C37 3WD . . . O 8 -32.294 160.628 121.321 1 137.89 ? C37 3WD 503 D 1 
HETATM 50 S S1 3WD . . . O 8 -27.106 162.161 121.024 1 148.18 ? S1 3WD 503 D 1 
HETATM 51 C C38 3WD . . . O 8 -26.028 163.476 120.97 1 148.23 ? C38 3WD 503 D 1 
HETATM 52 C C39 3WD . . . O 8 -26.621 164.574 121.438 1 147.59 ? C39 3WD 503 D 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#