data_4X1K # _model_server_result.job_id uNDDaYAT0XfmhObpGDFreA _model_server_result.datetime_utc '2024-11-27 01:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 4X1K # _exptl.entry_id 4X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1K _cell.length_a 66.73 _cell.length_b 128.3 _cell.length_c 254.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 399 n n C12 C13 LOC sing 400 n n C12 N1 LOC sing 401 n n N1 C11 LOC sing 402 n n C11 C14 LOC sing 403 n n C11 C10 LOC sing 404 n n C14 C15 LOC doub 405 n n C14 C21 LOC sing 406 n n C15 C16 LOC sing 407 n n C10 C9 LOC sing 408 n n C9 C8 LOC sing 409 n n C8 C7 LOC doub 410 n y C8 C22 LOC sing 411 n y C7 C5 LOC sing 412 n y C5 C3 LOC doub 413 n y C5 O3 LOC sing 414 n n C3 C1 LOC sing 415 n y C3 O2 LOC sing 416 n n C1 O1 LOC sing 417 n n C1 C22 LOC doub 418 n y O1 C2 LOC sing 419 n n O2 C4 LOC sing 420 n n O3 C6 LOC sing 421 n n C22 C21 LOC sing 422 n n C21 C20 LOC doub 423 n n C20 C19 LOC sing 424 n n C19 C17 LOC doub 425 n n C17 C16 LOC sing 426 n n C17 O6 LOC sing 427 n n C16 O5 LOC doub 428 n n O6 C18 LOC sing 429 n n C13 H13 LOC sing 430 n n C13 H13A LOC sing 431 n n C13 H13B LOC sing 432 n n N1 HN1 LOC sing 433 n n C11 H11 LOC sing 434 n n C15 H15 LOC sing 435 n n C10 H10 LOC sing 436 n n C10 H10A LOC sing 437 n n C9 H9 LOC sing 438 n n C9 H9A LOC sing 439 n n C7 H7 LOC sing 440 n n C2 H2 LOC sing 441 n n C2 H2A LOC sing 442 n n C2 H2B LOC sing 443 n n C4 H4 LOC sing 444 n n C4 H4A LOC sing 445 n n C4 H4B LOC sing 446 n n C6 H6 LOC sing 447 n n C6 H6A LOC sing 448 n n C6 H6B LOC sing 449 n n C20 H20 LOC sing 450 n n C19 H19 LOC sing 451 n n C18 H18 LOC sing 452 n n C18 H18A LOC sing 453 n n C18 H18B LOC sing 454 n n # _atom_sites.entry_id 4X1K _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WZ B 1 503 1 3WZ PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WZ D 1 503 1 3WZ PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . I 7 11.396 53.023 86.881 1 163.12 ? O4 LOC 502 B 1 HETATM 2 C C12 LOC . . . I 7 10.747 52.262 86.164 1 163.01 ? C12 LOC 502 B 1 HETATM 3 C C13 LOC . . . I 7 11.329 50.991 85.624 1 162.32 ? C13 LOC 502 B 1 HETATM 4 N N1 LOC . . . I 7 9.481 52.521 85.803 1 162.89 ? N1 LOC 502 B 1 HETATM 5 C C11 LOC . . . I 7 8.81 53.764 86.147 1 162.24 ? C11 LOC 502 B 1 HETATM 6 C C14 LOC . . . I 7 8.175 53.854 87.575 1 165.03 ? C14 LOC 502 B 1 HETATM 7 C C15 LOC . . . I 7 7.785 52.694 88.179 1 166.48 ? C15 LOC 502 B 1 HETATM 8 C C10 LOC . . . I 7 7.828 54.187 85.046 1 159.81 ? C10 LOC 502 B 1 HETATM 9 C C9 LOC . . . I 7 7.113 55.521 85.308 1 159.88 ? C9 LOC 502 B 1 HETATM 10 C C8 LOC . . . I 7 7.958 56.58 85.979 1 161.31 ? C8 LOC 502 B 1 HETATM 11 C C7 LOC . . . I 7 8.227 57.765 85.303 1 159.86 ? C7 LOC 502 B 1 HETATM 12 C C5 LOC . . . I 7 9.117 58.691 85.821 1 159.14 ? C5 LOC 502 B 1 HETATM 13 C C3 LOC . . . I 7 9.802 58.418 87.016 1 157.75 ? C3 LOC 502 B 1 HETATM 14 C C1 LOC . . . I 7 9.543 57.227 87.709 1 160.06 ? C1 LOC 502 B 1 HETATM 15 O O1 LOC . . . I 7 10.283 56.918 88.837 1 158.67 ? O1 LOC 502 B 1 HETATM 16 C C2 LOC . . . I 7 11.416 56.068 88.646 1 157.69 ? C2 LOC 502 B 1 HETATM 17 O O2 LOC . . . I 7 10.711 59.327 87.519 1 154.17 ? O2 LOC 502 B 1 HETATM 18 C C4 LOC . . . I 7 10.213 60.209 88.521 1 153.2 ? C4 LOC 502 B 1 HETATM 19 O O3 LOC . . . I 7 9.347 59.928 85.281 1 160.04 ? O3 LOC 502 B 1 HETATM 20 C C6 LOC . . . I 7 8.674 60.271 84.068 1 160.69 ? C6 LOC 502 B 1 HETATM 21 C C22 LOC . . . I 7 8.566 56.325 87.235 1 162.83 ? C22 LOC 502 B 1 HETATM 22 C C21 LOC . . . I 7 8.077 55.194 88.087 1 164.46 ? C21 LOC 502 B 1 HETATM 23 C C20 LOC . . . I 7 7.549 55.536 89.307 1 164.09 ? C20 LOC 502 B 1 HETATM 24 C C19 LOC . . . I 7 7.033 54.74 90.365 1 164.58 ? C19 LOC 502 B 1 HETATM 25 C C17 LOC . . . I 7 6.898 53.389 90.47 1 165.82 ? C17 LOC 502 B 1 HETATM 26 C C16 LOC . . . I 7 7.201 52.366 89.456 1 166.14 ? C16 LOC 502 B 1 HETATM 27 O O5 LOC . . . I 7 6.913 51.186 89.69 1 165.88 ? O5 LOC 502 B 1 HETATM 28 O O6 LOC . . . I 7 6.507 52.773 91.621 1 166.76 ? O6 LOC 502 B 1 HETATM 29 C C18 LOC . . . I 7 6.289 53.583 92.798 1 167.33 ? C18 LOC 502 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #