data_4X1K # _model_server_result.job_id lf0JW674toWkixA9WDA4kQ _model_server_result.datetime_utc '2024-11-23 08:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":502}' # _entry.id 4X1K # _exptl.entry_id 4X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1K _cell.length_a 66.73 _cell.length_b 128.3 _cell.length_c 254.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 399 n n C12 C13 LOC sing 400 n n C12 N1 LOC sing 401 n n N1 C11 LOC sing 402 n n C11 C14 LOC sing 403 n n C11 C10 LOC sing 404 n n C14 C15 LOC doub 405 n n C14 C21 LOC sing 406 n n C15 C16 LOC sing 407 n n C10 C9 LOC sing 408 n n C9 C8 LOC sing 409 n n C8 C7 LOC doub 410 n y C8 C22 LOC sing 411 n y C7 C5 LOC sing 412 n y C5 C3 LOC doub 413 n y C5 O3 LOC sing 414 n n C3 C1 LOC sing 415 n y C3 O2 LOC sing 416 n n C1 O1 LOC sing 417 n n C1 C22 LOC doub 418 n y O1 C2 LOC sing 419 n n O2 C4 LOC sing 420 n n O3 C6 LOC sing 421 n n C22 C21 LOC sing 422 n n C21 C20 LOC doub 423 n n C20 C19 LOC sing 424 n n C19 C17 LOC doub 425 n n C17 C16 LOC sing 426 n n C17 O6 LOC sing 427 n n C16 O5 LOC doub 428 n n O6 C18 LOC sing 429 n n C13 H13 LOC sing 430 n n C13 H13A LOC sing 431 n n C13 H13B LOC sing 432 n n N1 HN1 LOC sing 433 n n C11 H11 LOC sing 434 n n C15 H15 LOC sing 435 n n C10 H10 LOC sing 436 n n C10 H10A LOC sing 437 n n C9 H9 LOC sing 438 n n C9 H9A LOC sing 439 n n C7 H7 LOC sing 440 n n C2 H2 LOC sing 441 n n C2 H2A LOC sing 442 n n C2 H2B LOC sing 443 n n C4 H4 LOC sing 444 n n C4 H4A LOC sing 445 n n C4 H4B LOC sing 446 n n C6 H6 LOC sing 447 n n C6 H6A LOC sing 448 n n C6 H6B LOC sing 449 n n C20 H20 LOC sing 450 n n C19 H19 LOC sing 451 n n C18 H18 LOC sing 452 n n C18 H18A LOC sing 453 n n C18 H18B LOC sing 454 n n # _atom_sites.entry_id 4X1K _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WZ B 1 503 1 3WZ PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WZ D 1 503 1 3WZ PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . N 7 -17.416 130.01 116.234 1 142.87 ? O4 LOC 502 D 1 HETATM 2 C C12 LOC . . . N 7 -17.558 129.029 115.508 1 142.81 ? C12 LOC 502 D 1 HETATM 3 C C13 LOC . . . N 7 -16.484 127.995 115.365 1 144.59 ? C13 LOC 502 D 1 HETATM 4 N N1 LOC . . . N 7 -18.683 128.818 114.792 1 140.31 ? N1 LOC 502 D 1 HETATM 5 C C11 LOC . . . N 7 -19.822 129.714 114.886 1 139.75 ? C11 LOC 502 D 1 HETATM 6 C C14 LOC . . . N 7 -20.676 129.645 116.169 1 140.61 ? C14 LOC 502 D 1 HETATM 7 C C15 LOC . . . N 7 -20.808 128.4 116.719 1 140.24 ? C15 LOC 502 D 1 HETATM 8 C C10 LOC . . . N 7 -20.69 129.746 113.624 1 139.66 ? C10 LOC 502 D 1 HETATM 9 C C9 LOC . . . N 7 -21.764 130.846 113.699 1 139.92 ? C9 LOC 502 D 1 HETATM 10 C C8 LOC . . . N 7 -21.366 132.125 114.405 1 138.72 ? C8 LOC 502 D 1 HETATM 11 C C7 LOC . . . N 7 -21.287 133.31 113.671 1 135.88 ? C7 LOC 502 D 1 HETATM 12 C C5 LOC . . . N 7 -20.897 134.5 114.271 1 134.02 ? C5 LOC 502 D 1 HETATM 13 C C3 LOC . . . N 7 -20.522 134.517 115.627 1 135.56 ? C3 LOC 502 D 1 HETATM 14 C C1 LOC . . . N 7 -20.6 133.324 116.391 1 133.26 ? C1 LOC 502 D 1 HETATM 15 O O1 LOC . . . N 7 -20.2 133.33 117.715 1 126.43 ? O1 LOC 502 D 1 HETATM 16 C C2 LOC . . . N 7 -18.823 133.053 117.963 1 123.2 ? C2 LOC 502 D 1 HETATM 17 O O2 LOC . . . N 7 -19.986 135.672 116.18 1 136.54 ? O2 LOC 502 D 1 HETATM 18 C C4 LOC . . . N 7 -20.89 136.717 116.539 1 135.84 ? C4 LOC 502 D 1 HETATM 19 O O3 LOC . . . N 7 -20.897 135.722 113.652 1 130.62 ? O3 LOC 502 D 1 HETATM 20 C C6 LOC . . . N 7 -21.564 135.838 112.404 1 130.57 ? C6 LOC 502 D 1 HETATM 21 C C22 LOC . . . N 7 -21.054 132.119 115.798 1 137.88 ? C22 LOC 502 D 1 HETATM 22 C C21 LOC . . . N 7 -21.265 130.879 116.616 1 140.51 ? C21 LOC 502 D 1 HETATM 23 C C20 LOC . . . N 7 -22.003 131.023 117.765 1 141.35 ? C20 LOC 502 D 1 HETATM 24 C C19 LOC . . . N 7 -22.376 130.078 118.772 1 141.63 ? C19 LOC 502 D 1 HETATM 25 C C17 LOC . . . N 7 -22.144 128.736 118.862 1 140.9 ? C17 LOC 502 D 1 HETATM 26 C C16 LOC . . . N 7 -21.449 127.873 117.894 1 139.55 ? C16 LOC 502 D 1 HETATM 27 O O5 LOC . . . N 7 -21.463 126.646 118.068 1 137.89 ? O5 LOC 502 D 1 HETATM 28 O O6 LOC . . . N 7 -22.489 127.993 119.954 1 141.16 ? O6 LOC 502 D 1 HETATM 29 C C18 LOC . . . N 7 -23.164 128.64 121.059 1 140.18 ? C18 LOC 502 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #