data_4X1K # _model_server_result.job_id byiiGbNDpXdiS2xKs-w14w _model_server_result.datetime_utc '2024-11-14 06:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":503}' # _entry.id 4X1K # _exptl.entry_id 4X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 703.909 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-L-alanyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1K _cell.length_a 66.73 _cell.length_b 128.3 _cell.length_c 254.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C37 H61 N5 O8' _chem_comp.formula_weight 703.909 _chem_comp.id 3WZ _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-L-alanyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C25 3WZ doub 1 n n C18 C19 3WZ sing 2 n n C18 C17 3WZ sing 3 n n C20 C21 3WZ doub 4 n y C20 C19 3WZ sing 5 n y C21 C22 3WZ sing 6 n y C19 C24 3WZ doub 7 n y C25 O4 3WZ sing 8 n n C25 C17 3WZ sing 9 n n C22 C23 3WZ doub 10 n y C24 C23 3WZ sing 11 n y C17 N2 3WZ sing 12 n n N2 C16 3WZ sing 13 n n C16 O2 3WZ doub 14 n n C16 C14 3WZ sing 15 n n C11 C10 3WZ sing 16 n n C11 C12 3WZ sing 17 n n C14 C15 3WZ sing 18 n n C14 C13 3WZ sing 19 n n C10 C9 3WZ sing 20 n n C26 O5 3WZ sing 21 n n C12 C13 3WZ sing 22 n n C12 N1 3WZ sing 23 n n C13 O5 3WZ sing 24 n n C9 N1 3WZ sing 25 n n N1 C8 3WZ sing 26 n n C8 O1 3WZ doub 27 n n C8 C7 3WZ sing 28 n n C7 C6 3WZ sing 29 n n C6 O6 3WZ sing 30 n n C6 C5 3WZ sing 31 n n C4 C3 3WZ sing 32 n n C27 O6 3WZ sing 33 n n C5 C3 3WZ sing 34 n n C5 N3 3WZ sing 35 n n C3 C2 3WZ sing 36 n n C32 C31 3WZ sing 37 n n C2 C1 3WZ sing 38 n n N3 C28 3WZ sing 39 n n N3 C29 3WZ sing 40 n n C31 C30 3WZ sing 41 n n C31 C33 3WZ sing 42 n n C30 C29 3WZ sing 43 n n C30 N4 3WZ sing 44 n n C29 O7 3WZ doub 45 n n O8 C34 3WZ doub 46 n n N4 C34 3WZ sing 47 n n C34 C35 3WZ sing 48 n n C35 N5 3WZ sing 49 n n C35 C36 3WZ sing 50 n n C35 C37 3WZ sing 51 n n C36 H1 3WZ sing 52 n n C36 H2 3WZ sing 53 n n C36 H3 3WZ sing 54 n n C33 H4 3WZ sing 55 n n C33 H5 3WZ sing 56 n n C33 H6 3WZ sing 57 n n C37 H7 3WZ sing 58 n n C37 H8 3WZ sing 59 n n C37 H9 3WZ sing 60 n n C32 H10 3WZ sing 61 n n C32 H11 3WZ sing 62 n n C32 H12 3WZ sing 63 n n C4 H13 3WZ sing 64 n n C4 H14 3WZ sing 65 n n C4 H15 3WZ sing 66 n n N2 H16 3WZ sing 67 n n C7 H17 3WZ sing 68 n n C7 H18 3WZ sing 69 n n C6 H19 3WZ sing 70 n n C9 H20 3WZ sing 71 n n C9 H21 3WZ sing 72 n n C13 H22 3WZ sing 73 n n C20 H23 3WZ sing 74 n n C21 H24 3WZ sing 75 n n N5 H25 3WZ sing 76 n n N5 H26 3WZ sing 77 n n C18 H28 3WZ sing 78 n n C18 H29 3WZ sing 79 n n C26 H30 3WZ sing 80 n n C26 H31 3WZ sing 81 n n C26 H32 3WZ sing 82 n n C12 H33 3WZ sing 83 n n C11 H34 3WZ sing 84 n n C11 H35 3WZ sing 85 n n C10 H36 3WZ sing 86 n n C10 H37 3WZ sing 87 n n C14 H38 3WZ sing 88 n n C15 H39 3WZ sing 89 n n C15 H40 3WZ sing 90 n n C15 H41 3WZ sing 91 n n C5 H42 3WZ sing 92 n n C30 H43 3WZ sing 93 n n N4 H44 3WZ sing 94 n n C3 H45 3WZ sing 95 n n C2 H46 3WZ sing 96 n n C2 H47 3WZ sing 97 n n C1 H48 3WZ sing 98 n n C1 H49 3WZ sing 99 n n C1 H50 3WZ sing 100 n n C31 H51 3WZ sing 101 n n C28 H52 3WZ sing 102 n n C28 H53 3WZ sing 103 n n C28 H54 3WZ sing 104 n n C27 H55 3WZ sing 105 n n C27 H56 3WZ sing 106 n n C27 H57 3WZ sing 107 n n C17 H58 3WZ sing 108 n n C22 H59 3WZ sing 109 n n C23 H60 3WZ sing 110 n n C24 H61 3WZ sing 111 n n O4 H62 3WZ sing 112 n n # _atom_sites.entry_id 4X1K _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WZ B 1 503 1 3WZ PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WZ D 1 503 1 3WZ PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 3WZ . . . O 8 -40.472 160.445 133.107 1 136.55 ? N5 3WZ 503 D 1 HETATM 2 C C35 3WZ . . . O 8 -39.421 160.952 133.997 1 139.58 ? C35 3WZ 503 D 1 HETATM 3 C C34 3WZ . . . O 8 -38.221 161.428 133.134 1 142.02 ? C34 3WZ 503 D 1 HETATM 4 O O8 3WZ . . . O 8 -38.039 160.814 132.09 1 144.59 ? O8 3WZ 503 D 1 HETATM 5 C C36 3WZ . . . O 8 -38.889 159.846 134.927 1 139.73 ? C36 3WZ 503 D 1 HETATM 6 C C37 3WZ . . . O 8 -39.955 162.165 134.784 1 141.08 ? C37 3WZ 503 D 1 HETATM 7 N N4 3WZ . . . O 8 -37.468 162.46 133.554 1 141.25 ? N4 3WZ 503 D 1 HETATM 8 C C30 3WZ . . . O 8 -36.978 163.504 132.662 1 139.84 ? C30 3WZ 503 D 1 HETATM 9 C C29 3WZ . . . O 8 -36.095 162.979 131.517 1 141.52 ? C29 3WZ 503 D 1 HETATM 10 O O7 3WZ . . . O 8 -36.659 162.906 130.44 1 147.49 ? O7 3WZ 503 D 1 HETATM 11 C C31 3WZ . . . O 8 -36.53 164.818 133.342 1 138.71 ? C31 3WZ 503 D 1 HETATM 12 C C33 3WZ . . . O 8 -35.823 164.632 134.681 1 139.33 ? C33 3WZ 503 D 1 HETATM 13 C C32 3WZ . . . O 8 -35.764 165.758 132.426 1 138.87 ? C32 3WZ 503 D 1 HETATM 14 N N3 3WZ . . . O 8 -34.787 162.617 131.632 1 135.77 ? N3 3WZ 503 D 1 HETATM 15 C C6 3WZ . . . O 8 -33.759 162.839 129.212 1 130.21 ? C6 3WZ 503 D 1 HETATM 16 C C3 3WZ . . . O 8 -34.505 160.383 130.121 1 117.58 ? C3 3WZ 503 D 1 HETATM 17 C C5 3WZ . . . O 8 -34.061 161.88 130.441 1 128.46 ? C5 3WZ 503 D 1 HETATM 18 C C7 3WZ . . . O 8 -34.573 162.647 127.926 1 127.47 ? C7 3WZ 503 D 1 HETATM 19 C C8 3WZ . . . O 8 -33.699 162.787 126.705 1 128.16 ? C8 3WZ 503 D 1 HETATM 20 O O6 3WZ . . . O 8 -33.545 164.178 129.676 1 134.64 ? O6 3WZ 503 D 1 HETATM 21 O O1 3WZ . . . O 8 -32.598 162.263 126.684 1 126.48 ? O1 3WZ 503 D 1 HETATM 22 C C2 3WZ . . . O 8 -35.185 159.561 131.221 1 111.45 ? C2 3WZ 503 D 1 HETATM 23 C C1 3WZ . . . O 8 -34.272 159.086 132.328 1 109.51 ? C1 3WZ 503 D 1 HETATM 24 C C4 3WZ . . . O 8 -33.454 159.575 129.365 1 116.04 ? C4 3WZ 503 D 1 HETATM 25 C C28 3WZ . . . O 8 -33.851 162.737 132.752 1 136.02 ? C28 3WZ 503 D 1 HETATM 26 C C27 3WZ . . . O 8 -34.511 165.152 129.259 1 136.91 ? C27 3WZ 503 D 1 HETATM 27 C C10 3WZ . . . O 8 -35.655 164.393 124.099 1 132.45 ? C10 3WZ 503 D 1 HETATM 28 C C15 3WZ . . . O 8 -29.92 166.081 124.036 1 147.56 ? C15 3WZ 503 D 1 HETATM 29 C C14 3WZ . . . O 8 -31.125 165.197 123.713 1 145.48 ? C14 3WZ 503 D 1 HETATM 30 C C26 3WZ . . . O 8 -31.79 165.832 127.059 1 128.83 ? C26 3WZ 503 D 1 HETATM 31 C C16 3WZ . . . O 8 -30.481 163.921 123.139 1 151.75 ? C16 3WZ 503 D 1 HETATM 32 N N1 3WZ . . . O 8 -34.138 163.599 125.693 1 131.66 ? N1 3WZ 503 D 1 HETATM 33 C C12 3WZ . . . O 8 -33.326 164.094 124.571 1 133.58 ? C12 3WZ 503 D 1 HETATM 34 C C11 3WZ . . . O 8 -34.312 164.984 123.798 1 132.56 ? C11 3WZ 503 D 1 HETATM 35 C C9 3WZ . . . O 8 -35.55 163.994 125.552 1 132.77 ? C9 3WZ 503 D 1 HETATM 36 C C13 3WZ . . . O 8 -32.03 164.813 124.927 1 136.39 ? C13 3WZ 503 D 1 HETATM 37 O O5 3WZ . . . O 8 -32.285 165.953 125.736 1 130.44 ? O5 3WZ 503 D 1 HETATM 38 O O2 3WZ . . . O 8 -30.166 162.939 123.812 1 152.43 ? O2 3WZ 503 D 1 HETATM 39 N N2 3WZ . . . O 8 -30.318 163.977 121.82 1 157.09 ? N2 3WZ 503 D 1 HETATM 40 C C17 3WZ . . . O 8 -29.895 162.799 121.093 1 162.94 ? C17 3WZ 503 D 1 HETATM 41 C C25 3WZ . . . O 8 -28.467 162.969 120.595 1 168.79 ? C25 3WZ 503 D 1 HETATM 42 O O3 3WZ . . . O 8 -27.692 161.982 120.953 1 169.75 ? O3 3WZ 503 D 1 HETATM 43 C C18 3WZ . . . O 8 -30.885 162.478 119.96 1 162.2 ? C18 3WZ 503 D 1 HETATM 44 C C19 3WZ . . . O 8 -32.264 162.092 120.448 1 159.76 ? C19 3WZ 503 D 1 HETATM 45 C C20 3WZ . . . O 8 -33.266 163.045 120.579 1 158.13 ? C20 3WZ 503 D 1 HETATM 46 C C24 3WZ . . . O 8 -32.575 160.768 120.73 1 158.91 ? C24 3WZ 503 D 1 HETATM 47 C C21 3WZ . . . O 8 -34.549 162.679 120.964 1 156.42 ? C21 3WZ 503 D 1 HETATM 48 C C23 3WZ . . . O 8 -33.86 160.406 121.108 1 157.59 ? C23 3WZ 503 D 1 HETATM 49 C C22 3WZ . . . O 8 -34.846 161.361 121.222 1 156.1 ? C22 3WZ 503 D 1 HETATM 50 O O4 3WZ . . . O 8 -28.089 163.95 119.978 1 172.18 ? O4 3WZ 503 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #