data_4X1K # _model_server_result.job_id RSDUuNLHoROtbq_XxLZ-sg _model_server_result.datetime_utc '2024-11-23 08:30:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 4X1K # _exptl.entry_id 4X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1K _cell.length_a 66.73 _cell.length_b 128.3 _cell.length_c 254.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 286 n n PG O2G GTP sing 287 n n PG O3G GTP sing 288 n n PG O3B GTP sing 289 n n O2G HOG2 GTP sing 290 n n O3G HOG3 GTP sing 291 n n O3B PB GTP sing 292 n n PB O1B GTP doub 293 n n PB O2B GTP sing 294 n n PB O3A GTP sing 295 n n O2B HOB2 GTP sing 296 n n O3A PA GTP sing 297 n n PA O1A GTP doub 298 n n PA O2A GTP sing 299 n n PA O5' GTP sing 300 n n O2A HOA2 GTP sing 301 n n O5' C5' GTP sing 302 n n C5' C4' GTP sing 303 n n C5' H5' GTP sing 304 n n C5' "H5''" GTP sing 305 n n C4' O4' GTP sing 306 n n C4' C3' GTP sing 307 n n C4' H4' GTP sing 308 n n O4' C1' GTP sing 309 n n C3' O3' GTP sing 310 n n C3' C2' GTP sing 311 n n C3' H3' GTP sing 312 n n O3' HO3' GTP sing 313 n n C2' O2' GTP sing 314 n n C2' C1' GTP sing 315 n n C2' H2' GTP sing 316 n n O2' HO2' GTP sing 317 n n C1' N9 GTP sing 318 n n C1' H1' GTP sing 319 n n N9 C8 GTP sing 320 n y N9 C4 GTP sing 321 n y C8 N7 GTP doub 322 n y C8 H8 GTP sing 323 n n N7 C5 GTP sing 324 n y C5 C6 GTP sing 325 n n C5 C4 GTP doub 326 n y C6 O6 GTP doub 327 n n C6 N1 GTP sing 328 n n N1 C2 GTP sing 329 n n N1 HN1 GTP sing 330 n n C2 N2 GTP sing 331 n n C2 N3 GTP doub 332 n n N2 HN21 GTP sing 333 n n N2 HN22 GTP sing 334 n n N3 C4 GTP sing 335 n n # _atom_sites.entry_id 4X1K _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WZ B 1 503 1 3WZ PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WZ D 1 503 1 3WZ PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 4 6.871 50.729 75.487 1 147.52 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . F 4 6.11 50.726 74.195 1 147.9 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . F 4 6.102 51.474 76.536 1 147.75 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . F 4 8.243 51.316 75.352 1 146.04 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . F 4 6.983 49.197 75.948 1 145.26 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . F 4 6.207 48.402 76.952 1 143.04 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . F 4 5.729 47.124 76.338 1 141 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . F 4 5.058 49.204 77.483 1 142.84 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . F 4 7.17 48.029 78.176 1 145.51 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . F 4 8.107 46.872 78.286 1 146.16 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . F 4 7.971 46.025 77.057 1 146.61 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . F 4 9.512 47.384 78.372 1 146.31 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . F 4 7.744 46.021 79.596 1 145.49 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . F 4 8.417 46.152 80.862 1 147.56 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . F 4 9.216 44.893 81.087 1 151.01 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . F 4 10.02 44.612 79.917 1 153.59 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . F 4 10.183 44.923 82.274 1 152.6 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . F 4 10.144 43.69 82.988 1 153.5 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . F 4 11.535 45.182 81.603 1 152.63 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . F 4 12.652 44.737 82.365 1 150.49 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . F 4 11.359 44.393 80.312 1 155.38 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . F 4 12.258 44.777 79.204 1 158.94 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . F 4 12.223 45.918 78.442 1 160.11 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . F 4 13.143 45.957 77.507 1 161.41 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . F 4 13.841 44.771 77.667 1 161.6 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . F 4 15.017 44.241 76.988 1 161.69 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . F 4 15.636 44.746 76.051 1 161.51 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . F 4 15.434 43.041 77.534 1 161.06 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . F 4 14.83 42.393 78.582 1 160.65 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . F 4 15.41 41.277 79.015 1 160.91 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . F 4 13.736 42.844 79.198 1 160.62 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . F 4 13.305 44.031 78.709 1 160.62 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #