data_4X1K # _model_server_result.job_id FOuh5_gXm9LNGfKXffvAJQ _model_server_result.datetime_utc '2024-11-27 01:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":600}' # _entry.id 4X1K # _exptl.entry_id 4X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1K _cell.length_a 66.73 _cell.length_b 128.3 _cell.length_c 254.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 286 n n PG O2G GTP sing 287 n n PG O3G GTP sing 288 n n PG O3B GTP sing 289 n n O2G HOG2 GTP sing 290 n n O3G HOG3 GTP sing 291 n n O3B PB GTP sing 292 n n PB O1B GTP doub 293 n n PB O2B GTP sing 294 n n PB O3A GTP sing 295 n n O2B HOB2 GTP sing 296 n n O3A PA GTP sing 297 n n PA O1A GTP doub 298 n n PA O2A GTP sing 299 n n PA O5' GTP sing 300 n n O2A HOA2 GTP sing 301 n n O5' C5' GTP sing 302 n n C5' C4' GTP sing 303 n n C5' H5' GTP sing 304 n n C5' "H5''" GTP sing 305 n n C4' O4' GTP sing 306 n n C4' C3' GTP sing 307 n n C4' H4' GTP sing 308 n n O4' C1' GTP sing 309 n n C3' O3' GTP sing 310 n n C3' C2' GTP sing 311 n n C3' H3' GTP sing 312 n n O3' HO3' GTP sing 313 n n C2' O2' GTP sing 314 n n C2' C1' GTP sing 315 n n C2' H2' GTP sing 316 n n O2' HO2' GTP sing 317 n n C1' N9 GTP sing 318 n n C1' H1' GTP sing 319 n n N9 C8 GTP sing 320 n y N9 C4 GTP sing 321 n y C8 N7 GTP doub 322 n y C8 H8 GTP sing 323 n n N7 C5 GTP sing 324 n y C5 C6 GTP sing 325 n n C5 C4 GTP doub 326 n y C6 O6 GTP doub 327 n n C6 N1 GTP sing 328 n n N1 C2 GTP sing 329 n n N1 HN1 GTP sing 330 n n C2 N2 GTP sing 331 n n C2 N3 GTP doub 332 n n N2 HN21 GTP sing 333 n n N2 HN22 GTP sing 334 n n N3 C4 GTP sing 335 n n # _atom_sites.entry_id 4X1K _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WZ B 1 503 1 3WZ PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WZ D 1 503 1 3WZ PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . K 4 -18.907 125.772 104.619 1 114.61 ? PG GTP 600 C 1 HETATM 2 O O1G GTP . . . K 4 -18.684 126.099 103.177 1 113.71 ? O1G GTP 600 C 1 HETATM 3 O O2G GTP . . . K 4 -20.349 125.696 105.024 1 113.49 ? O2G GTP 600 C 1 HETATM 4 O O3G GTP . . . K 4 -18.274 126.772 105.534 1 112.85 ? O3G GTP 600 C 1 HETATM 5 O O3B GTP . . . K 4 -18.238 124.336 104.864 1 118 ? O3B GTP 600 C 1 HETATM 6 P PB GTP . . . K 4 -18.687 123.193 105.72 1 121.33 ? PB GTP 600 C 1 HETATM 7 O O1B GTP . . . K 4 -18.284 121.891 105.094 1 119.91 ? O1B GTP 600 C 1 HETATM 8 O O2B GTP . . . K 4 -20.18 123.254 105.859 1 120.87 ? O2B GTP 600 C 1 HETATM 9 O O3A GTP . . . K 4 -17.979 123.313 107.159 1 122.41 ? O3A GTP 600 C 1 HETATM 10 P PA GTP . . . K 4 -16.774 122.688 107.809 1 118.36 ? PA GTP 600 C 1 HETATM 11 O O1A GTP . . . K 4 -16.15 121.723 106.846 1 119.67 ? O1A GTP 600 C 1 HETATM 12 O O2A GTP . . . K 4 -15.782 123.753 108.168 1 116.97 ? O2A GTP 600 C 1 HETATM 13 O O5' GTP . . . K 4 -17.206 121.895 109.132 1 114.72 ? O5' GTP 600 C 1 HETATM 14 C C5' GTP . . . K 4 -16.808 122.252 110.47 1 115.6 ? C5' GTP 600 C 1 HETATM 15 C C4' GTP . . . K 4 -15.847 121.189 110.939 1 116.25 ? C4' GTP 600 C 1 HETATM 16 O O4' GTP . . . K 4 -14.723 121.135 110.032 1 115.01 ? O4' GTP 600 C 1 HETATM 17 C C3' GTP . . . K 4 -15.272 121.345 112.35 1 116.18 ? C3' GTP 600 C 1 HETATM 18 O O3' GTP . . . K 4 -15.307 120.121 113.083 1 113.05 ? O3' GTP 600 C 1 HETATM 19 C C2' GTP . . . K 4 -13.853 121.86 112.09 1 117.89 ? C2' GTP 600 C 1 HETATM 20 O O2' GTP . . . K 4 -12.966 121.513 113.15 1 120.29 ? O2' GTP 600 C 1 HETATM 21 C C1' GTP . . . K 4 -13.523 121.156 110.773 1 114.91 ? C1' GTP 600 C 1 HETATM 22 N N9 GTP . . . K 4 -12.503 121.812 109.956 1 112.38 ? N9 GTP 600 C 1 HETATM 23 C C8 GTP . . . K 4 -12.667 122.888 109.127 1 113.89 ? C8 GTP 600 C 1 HETATM 24 N N7 GTP . . . K 4 -11.593 123.183 108.437 1 116.15 ? N7 GTP 600 C 1 HETATM 25 C C5 GTP . . . K 4 -10.659 122.243 108.845 1 116.53 ? C5 GTP 600 C 1 HETATM 26 C C6 GTP . . . K 4 -9.274 122.024 108.452 1 118.61 ? C6 GTP 600 C 1 HETATM 27 O O6 GTP . . . K 4 -8.622 122.652 107.615 1 119.45 ? O6 GTP 600 C 1 HETATM 28 N N1 GTP . . . K 4 -8.706 120.955 109.125 1 118.16 ? N1 GTP 600 C 1 HETATM 29 C C2 GTP . . . K 4 -9.353 120.158 110.038 1 116.47 ? C2 GTP 600 C 1 HETATM 30 N N2 GTP . . . K 4 -8.686 119.092 110.491 1 114.65 ? N2 GTP 600 C 1 HETATM 31 N N3 GTP . . . K 4 -10.618 120.353 110.418 1 115.54 ? N3 GTP 600 C 1 HETATM 32 C C4 GTP . . . K 4 -11.207 121.397 109.787 1 113.9 ? C4 GTP 600 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #