data_4X1N # _model_server_result.job_id GdTn-zqxmIF258-nThu1zg _model_server_result.datetime_utc '2024-11-24 22:02:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 4X1N # _exptl.entry_id 4X1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidine-1-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X1N _cell.length_a 121.595 _cell.length_b 121.595 _cell.length_c 42.4 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 P CYS 1 1_555 A SG CYS 10 P CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 31 U CYS 42 1_555 B SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 B SG CYS 135 U CYS 136 1_555 B SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 167 U CYS 168 1_555 B SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 194 U CYS 191 1_555 B SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A CB ALA 6 P ALA 6 1_555 C C1 MRZ . P MRZ 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? # _chem_comp.formula 'C6 H13 N3' _chem_comp.formula_weight 127.188 _chem_comp.id MRZ _chem_comp.mon_nstd_flag . _chem_comp.name piperidine-1-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C7 MRZ doub 237 n n C3 C2 MRZ sing 238 n n C3 N4 MRZ sing 239 n n C2 C1 MRZ sing 240 n n C7 N4 MRZ sing 241 n n C7 N8 MRZ sing 242 n n N4 C5 MRZ sing 243 n n C1 C6 MRZ sing 244 n n C5 C6 MRZ sing 245 n n C1 H1 MRZ sing 246 n n C1 H2 MRZ sing 247 n n C6 H3 MRZ sing 248 n n C6 H4 MRZ sing 249 n n C5 H5 MRZ sing 250 n n C5 H6 MRZ sing 251 n n C3 H7 MRZ sing 252 n n C3 H8 MRZ sing 253 n n C2 H9 MRZ sing 254 n n C2 H10 MRZ sing 255 n n N8 H11 MRZ sing 256 n n N8 H12 MRZ sing 257 n n N9 H13 MRZ sing 258 n n # _atom_sites.entry_id 4X1N _atom_sites.fract_transf_matrix[1][1] 0.008224 _atom_sites.fract_transf_matrix[1][2] 0.004748 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MRZ P 1 100 100 MRZ MRZ . D 4 HOH P 1 201 65 HOH HOH . E 4 HOH U 1 301 45 HOH HOH . E 4 HOH U 2 302 14 HOH HOH . E 4 HOH U 3 303 28 HOH HOH . E 4 HOH U 4 304 23 HOH HOH . E 4 HOH U 5 305 31 HOH HOH . E 4 HOH U 6 306 27 HOH HOH . E 4 HOH U 7 307 33 HOH HOH . E 4 HOH U 8 308 35 HOH HOH . E 4 HOH U 9 309 59 HOH HOH . E 4 HOH U 10 310 51 HOH HOH . E 4 HOH U 11 311 38 HOH HOH . E 4 HOH U 12 312 20 HOH HOH . E 4 HOH U 13 313 29 HOH HOH . E 4 HOH U 14 314 25 HOH HOH . E 4 HOH U 15 315 36 HOH HOH . E 4 HOH U 16 316 32 HOH HOH . E 4 HOH U 17 317 26 HOH HOH . E 4 HOH U 18 318 30 HOH HOH . E 4 HOH U 19 319 46 HOH HOH . E 4 HOH U 20 320 41 HOH HOH . E 4 HOH U 21 321 50 HOH HOH . E 4 HOH U 22 322 49 HOH HOH . E 4 HOH U 23 323 61 HOH HOH . E 4 HOH U 24 324 1 HOH HOH . E 4 HOH U 25 325 2 HOH HOH . E 4 HOH U 26 326 3 HOH HOH . E 4 HOH U 27 327 4 HOH HOH . E 4 HOH U 28 328 5 HOH HOH . E 4 HOH U 29 329 6 HOH HOH . E 4 HOH U 30 330 7 HOH HOH . E 4 HOH U 31 331 8 HOH HOH . E 4 HOH U 32 332 9 HOH HOH . E 4 HOH U 33 333 10 HOH HOH . E 4 HOH U 34 334 11 HOH HOH . E 4 HOH U 35 335 12 HOH HOH . E 4 HOH U 36 336 13 HOH HOH . E 4 HOH U 37 337 15 HOH HOH . E 4 HOH U 38 338 16 HOH HOH . E 4 HOH U 39 339 17 HOH HOH . E 4 HOH U 40 340 18 HOH HOH . E 4 HOH U 41 341 19 HOH HOH . E 4 HOH U 42 342 21 HOH HOH . E 4 HOH U 43 343 22 HOH HOH . E 4 HOH U 44 344 24 HOH HOH . E 4 HOH U 45 345 34 HOH HOH . E 4 HOH U 46 346 37 HOH HOH . E 4 HOH U 47 347 39 HOH HOH . E 4 HOH U 48 348 40 HOH HOH . E 4 HOH U 49 349 42 HOH HOH . E 4 HOH U 50 350 43 HOH HOH . E 4 HOH U 51 351 44 HOH HOH . E 4 HOH U 52 352 47 HOH HOH . E 4 HOH U 53 353 48 HOH HOH . E 4 HOH U 54 354 52 HOH HOH . E 4 HOH U 55 355 53 HOH HOH . E 4 HOH U 56 356 54 HOH HOH . E 4 HOH U 57 357 55 HOH HOH . E 4 HOH U 58 358 56 HOH HOH . E 4 HOH U 59 359 57 HOH HOH . E 4 HOH U 60 360 58 HOH HOH . E 4 HOH U 61 361 60 HOH HOH . E 4 HOH U 62 362 62 HOH HOH . E 4 HOH U 63 363 63 HOH HOH . E 4 HOH U 64 364 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRZ . . . C 3 29.679 16.924 -10.823 1 35.33 ? C1 MRZ 100 P 1 HETATM 2 C C6 MRZ . . . C 3 30.461 16.465 -12.018 1 35.87 ? C6 MRZ 100 P 1 HETATM 3 C C5 MRZ . . . C 3 31.604 17.433 -12.31 1 34.84 ? C5 MRZ 100 P 1 HETATM 4 N N4 MRZ . . . C 3 32.428 17.666 -11.132 1 35.74 ? N4 MRZ 100 P 1 HETATM 5 C C3 MRZ . . . C 3 31.775 17.77 -9.848 1 34.91 ? C3 MRZ 100 P 1 HETATM 6 C C2 MRZ . . . C 3 30.653 16.785 -9.705 1 35.5 ? C2 MRZ 100 P 1 HETATM 7 C C7 MRZ . . . C 3 33.74 17.835 -11.219 1 36.21 ? C7 MRZ 100 P 1 HETATM 8 N N8 MRZ . . . C 3 34.458 18.051 -10.22 1 35.1 ? N8 MRZ 100 P 1 HETATM 9 N N9 MRZ . . . C 3 34.374 17.779 -12.458 1 36.28 ? N9 MRZ 100 P 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #