data_4X1R # _model_server_result.job_id nAx3RbHFMjF_4hqhIbmYjQ _model_server_result.datetime_utc '2024-10-16 18:46:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 4X1R # _exptl.entry_id 4X1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.166 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-phenylguanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X1R _cell.length_a 121.177 _cell.length_b 121.177 _cell.length_c 42.368 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 P CYS 1 1_555 A SG CYS 10 P CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 31 U CYS 42 1_555 B SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 39 U CYS 50 1_555 B SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? disulf ? disulf4 B SG CYS 135 U CYS 136 1_555 B SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 B SG CYS 167 U CYS 168 1_555 B SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 194 U CYS 191 1_555 B SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A CB ALA 6 P ALA 6 1_555 C C2 PL0 . P PL0 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? # _chem_comp.formula 'C7 H9 N3' _chem_comp.formula_weight 135.166 _chem_comp.id PL0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-phenylguanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 PL0 doub 260 n y C2 C1 PL0 sing 261 n y C3 C4 PL0 sing 262 n y C4 C5 PL0 doub 263 n y C5 C6 PL0 sing 264 n y C5 N1 PL0 sing 265 n n C6 C1 PL0 doub 266 n y C7 N1 PL0 sing 267 n n C7 N2 PL0 sing 268 n n C7 N3 PL0 doub 269 n n C2 H2 PL0 sing 270 n n C3 H3 PL0 sing 271 n n C4 H4 PL0 sing 272 n n C6 H6 PL0 sing 273 n n C1 H1 PL0 sing 274 n n N1 HN1 PL0 sing 275 n n N2 HN21 PL0 sing 276 n n N2 HN22 PL0 sing 277 n n N3 HN3 PL0 sing 278 n n # _atom_sites.entry_id 4X1R _atom_sites.fract_transf_matrix[1][1] 0.008252 _atom_sites.fract_transf_matrix[1][2] 0.004765 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PL0 P 1 100 100 PL0 PL0 . D 4 HOH P 1 201 25 HOH HOH . E 4 HOH U 1 301 28 HOH HOH . E 4 HOH U 2 302 21 HOH HOH . E 4 HOH U 3 303 16 HOH HOH . E 4 HOH U 4 304 15 HOH HOH . E 4 HOH U 5 305 27 HOH HOH . E 4 HOH U 6 306 6 HOH HOH . E 4 HOH U 7 307 19 HOH HOH . E 4 HOH U 8 308 30 HOH HOH . E 4 HOH U 9 309 1 HOH HOH . E 4 HOH U 10 310 2 HOH HOH . E 4 HOH U 11 311 3 HOH HOH . E 4 HOH U 12 312 4 HOH HOH . E 4 HOH U 13 313 5 HOH HOH . E 4 HOH U 14 314 7 HOH HOH . E 4 HOH U 15 315 8 HOH HOH . E 4 HOH U 16 316 9 HOH HOH . E 4 HOH U 17 317 10 HOH HOH . E 4 HOH U 18 318 11 HOH HOH . E 4 HOH U 19 319 12 HOH HOH . E 4 HOH U 20 320 13 HOH HOH . E 4 HOH U 21 321 14 HOH HOH . E 4 HOH U 22 322 17 HOH HOH . E 4 HOH U 23 323 18 HOH HOH . E 4 HOH U 24 324 20 HOH HOH . E 4 HOH U 25 325 22 HOH HOH . E 4 HOH U 26 326 23 HOH HOH . E 4 HOH U 27 327 24 HOH HOH . E 4 HOH U 28 328 26 HOH HOH . E 4 HOH U 29 329 29 HOH HOH . E 4 HOH U 30 330 31 HOH HOH . E 4 HOH U 31 331 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PL0 . . . C 3 -31.46 -17.608 -10.632 1 52.26 ? C2 PL0 100 P 1 HETATM 2 C C3 PL0 . . . C 3 -31.311 -17.999 -11.934 1 54.86 ? C3 PL0 100 P 1 HETATM 3 C C4 PL0 . . . C 3 -30.254 -17.539 -12.684 1 54.86 ? C4 PL0 100 P 1 HETATM 4 C C5 PL0 . . . C 3 -29.329 -16.681 -12.145 1 56.83 ? C5 PL0 100 P 1 HETATM 5 C C6 PL0 . . . C 3 -29.475 -16.284 -10.832 1 51.74 ? C6 PL0 100 P 1 HETATM 6 C C1 PL0 . . . C 3 -30.543 -16.748 -10.087 1 51.24 ? C1 PL0 100 P 1 HETATM 7 C C7 PL0 . . . C 3 -27.085 -16.027 -12.518 1 59.24 ? C7 PL0 100 P 1 HETATM 8 N N1 PL0 . . . C 3 -28.295 -16.239 -12.959 1 54.24 ? N1 PL0 100 P 1 HETATM 9 N N2 PL0 . . . C 3 -26.782 -16.24 -11.269 1 56.47 ? N2 PL0 100 P 1 HETATM 10 N N3 PL0 . . . C 3 -26.201 -15.637 -13.288 1 62.22 ? N3 PL0 100 P 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #