data_4X1T
#
_model_server_result.job_id            aUm8-wJOs6Sqvj9hh8LNKQ 
_model_server_result.datetime_utc      '2025-09-08 16:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":608}' 
#
_entry.id    4X1T 
#
_exptl.entry_id    4X1T 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4X1T 
_cell.length_a            139.25 
_cell.length_b            139.25 
_cell.length_c            38.27 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4X1T 
_atom_sites.fract_transf_matrix[1][1]    0.007181 
_atom_sites.fract_transf_matrix[1][2]    0.004146 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 601 601 UDP UDP . 
C 3 EDO A 1 602 1 EDO EDO . 
D 3 EDO A 1 603 2 EDO EDO . 
E 3 EDO A 1 604 4 EDO EDO . 
F 3 EDO A 1 605 5 EDO EDO . 
G 3 EDO A 1 606 6 EDO EDO . 
H 3 EDO A 1 607 7 EDO EDO . 
I 3 EDO A 1 608 8 EDO EDO . 
J 3 EDO A 1 609 9 EDO EDO . 
K 3 EDO A 1 610 10 EDO EDO . 
L 4 HOH A 1 701 10 HOH HOH . 
L 4 HOH A 2 702 9 HOH HOH . 
L 4 HOH A 3 703 36 HOH HOH . 
L 4 HOH A 4 704 34 HOH HOH . 
L 4 HOH A 5 705 52 HOH HOH . 
L 4 HOH A 6 706 37 HOH HOH . 
L 4 HOH A 7 707 50 HOH HOH . 
L 4 HOH A 8 708 47 HOH HOH . 
L 4 HOH A 9 709 40 HOH HOH . 
L 4 HOH A 10 710 33 HOH HOH . 
L 4 HOH A 11 711 23 HOH HOH . 
L 4 HOH A 12 712 45 HOH HOH . 
L 4 HOH A 13 713 49 HOH HOH . 
L 4 HOH A 14 714 16 HOH HOH . 
L 4 HOH A 15 715 28 HOH HOH . 
L 4 HOH A 16 716 35 HOH HOH . 
L 4 HOH A 17 717 38 HOH HOH . 
L 4 HOH A 18 718 14 HOH HOH . 
L 4 HOH A 19 719 46 HOH HOH . 
L 4 HOH A 20 720 8 HOH HOH . 
L 4 HOH A 21 721 43 HOH HOH . 
L 4 HOH A 22 722 4 HOH HOH . 
L 4 HOH A 23 723 53 HOH HOH . 
L 4 HOH A 24 724 15 HOH HOH . 
L 4 HOH A 25 725 1 HOH HOH . 
L 4 HOH A 26 726 5 HOH HOH . 
L 4 HOH A 27 727 6 HOH HOH . 
L 4 HOH A 28 728 2 HOH HOH . 
L 4 HOH A 29 729 42 HOH HOH . 
L 4 HOH A 30 730 19 HOH HOH . 
L 4 HOH A 31 731 48 HOH HOH . 
L 4 HOH A 32 732 56 HOH HOH . 
L 4 HOH A 33 733 13 HOH HOH . 
L 4 HOH A 34 734 39 HOH HOH . 
L 4 HOH A 35 735 17 HOH HOH . 
L 4 HOH A 36 736 22 HOH HOH . 
L 4 HOH A 37 737 12 HOH HOH . 
L 4 HOH A 38 738 41 HOH HOH . 
L 4 HOH A 39 739 11 HOH HOH . 
L 4 HOH A 40 740 55 HOH HOH . 
L 4 HOH A 41 741 57 HOH HOH . 
L 4 HOH A 42 742 44 HOH HOH . 
L 4 HOH A 43 743 30 HOH HOH . 
L 4 HOH A 44 744 3 HOH HOH . 
L 4 HOH A 45 745 21 HOH HOH . 
L 4 HOH A 46 746 24 HOH HOH . 
L 4 HOH A 47 747 51 HOH HOH . 
L 4 HOH A 48 748 32 HOH HOH . 
L 4 HOH A 49 749 18 HOH HOH . 
L 4 HOH A 50 750 29 HOH HOH . 
L 4 HOH A 51 751 7 HOH HOH . 
L 4 HOH A 52 752 31 HOH HOH . 
L 4 HOH A 53 753 27 HOH HOH . 
L 4 HOH A 54 754 26 HOH HOH . 
L 4 HOH A 55 755 20 HOH HOH . 
L 4 HOH A 56 756 54 HOH HOH . 
L 4 HOH A 57 757 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 3 -60.908 -6.046 1.561 1 61.84 ? C1 EDO 608 A 1 
HETATM 2 O O1 EDO . . . I 3 -60.23 -6.476 2.746 1 63.28 ? O1 EDO 608 A 1 
HETATM 3 C C2 EDO . . . I 3 -62.056 -6.995 1.247 1 59.13 ? C2 EDO 608 A 1 
HETATM 4 O O2 EDO . . . I 3 -62.959 -6.362 0.333 1 58.05 ? O2 EDO 608 A 1 
HETATM 5 H H11 EDO . . . I 3 -60.208 -6.026 0.723 1 74.21 ? H11 EDO 608 A 1 
HETATM 6 H H12 EDO . . . I 3 -61.295 -5.035 1.705 1 74.21 ? H12 EDO 608 A 1 
HETATM 7 H HO1 EDO . . . I 3 -59.502 -5.869 2.939 1 75.94 ? HO1 EDO 608 A 1 
HETATM 8 H H21 EDO . . . I 3 -62.583 -7.255 2.167 1 70.96 ? H21 EDO 608 A 1 
HETATM 9 H H22 EDO . . . I 3 -61.666 -7.914 0.805 1 70.96 ? H22 EDO 608 A 1 
HETATM 10 H HO2 EDO . . . I 3 -63.689 -6.964 0.132 1 69.66 ? HO2 EDO 608 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
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