data_4X1Y # _model_server_result.job_id Y2QR9CqYwNzMsB2qpDj9Wg _model_server_result.datetime_utc '2024-11-13 06:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 4X1Y # _exptl.entry_id 4X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1Y _cell.length_a 66.61 _cell.length_b 127.86 _cell.length_c 255.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 402 n n C12 C13 LOC sing 403 n n C12 N1 LOC sing 404 n n N1 C11 LOC sing 405 n n C11 C14 LOC sing 406 n n C11 C10 LOC sing 407 n n C14 C15 LOC doub 408 n n C14 C21 LOC sing 409 n n C15 C16 LOC sing 410 n n C10 C9 LOC sing 411 n n C9 C8 LOC sing 412 n n C8 C7 LOC doub 413 n y C8 C22 LOC sing 414 n y C7 C5 LOC sing 415 n y C5 C3 LOC doub 416 n y C5 O3 LOC sing 417 n n C3 C1 LOC sing 418 n y C3 O2 LOC sing 419 n n C1 O1 LOC sing 420 n n C1 C22 LOC doub 421 n y O1 C2 LOC sing 422 n n O2 C4 LOC sing 423 n n O3 C6 LOC sing 424 n n C22 C21 LOC sing 425 n n C21 C20 LOC doub 426 n n C20 C19 LOC sing 427 n n C19 C17 LOC doub 428 n n C17 C16 LOC sing 429 n n C17 O6 LOC sing 430 n n C16 O5 LOC doub 431 n n O6 C18 LOC sing 432 n n C13 H13 LOC sing 433 n n C13 H13A LOC sing 434 n n C13 H13B LOC sing 435 n n N1 HN1 LOC sing 436 n n C11 H11 LOC sing 437 n n C15 H15 LOC sing 438 n n C10 H10 LOC sing 439 n n C10 H10A LOC sing 440 n n C9 H9 LOC sing 441 n n C9 H9A LOC sing 442 n n C7 H7 LOC sing 443 n n C2 H2 LOC sing 444 n n C2 H2A LOC sing 445 n n C2 H2B LOC sing 446 n n C4 H4 LOC sing 447 n n C4 H4A LOC sing 448 n n C4 H4B LOC sing 449 n n C6 H6 LOC sing 450 n n C6 H6A LOC sing 451 n n C6 H6B LOC sing 452 n n C20 H20 LOC sing 453 n n C19 H19 LOC sing 454 n n C18 H18 LOC sing 455 n n C18 H18A LOC sing 456 n n C18 H18B LOC sing 457 n n # _atom_sites.entry_id 4X1Y _atom_sites.fract_transf_matrix[1][1] 0.015013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WV B 1 503 1 3WV PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WV D 1 503 1 3WV PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . I 7 10.974 52.612 87.103 1 128.5 ? O4 LOC 502 B 1 HETATM 2 C C12 LOC . . . I 7 10.272 51.919 86.365 1 125.84 ? C12 LOC 502 B 1 HETATM 3 C C13 LOC . . . I 7 10.712 50.564 85.893 1 121.29 ? C13 LOC 502 B 1 HETATM 4 N N1 LOC . . . I 7 9.06 52.325 85.931 1 124.84 ? N1 LOC 502 B 1 HETATM 5 C C11 LOC . . . I 7 8.45 53.579 86.354 1 120.34 ? C11 LOC 502 B 1 HETATM 6 C C14 LOC . . . I 7 7.852 53.672 87.818 1 121.33 ? C14 LOC 502 B 1 HETATM 7 C C15 LOC . . . I 7 7.457 52.508 88.413 1 122.24 ? C15 LOC 502 B 1 HETATM 8 C C10 LOC . . . I 7 7.444 54.076 85.308 1 116.05 ? C10 LOC 502 B 1 HETATM 9 C C9 LOC . . . I 7 6.887 55.474 85.617 1 116.51 ? C9 LOC 502 B 1 HETATM 10 C C8 LOC . . . I 7 7.856 56.425 86.283 1 119.35 ? C8 LOC 502 B 1 HETATM 11 C C7 LOC . . . I 7 8.278 57.563 85.598 1 119.91 ? C7 LOC 502 B 1 HETATM 12 C C5 LOC . . . I 7 9.217 58.42 86.15 1 119.74 ? C5 LOC 502 B 1 HETATM 13 C C3 LOC . . . I 7 9.82 58.101 87.381 1 119.57 ? C3 LOC 502 B 1 HETATM 14 C C1 LOC . . . I 7 9.419 56.95 88.076 1 118.09 ? C1 LOC 502 B 1 HETATM 15 O O1 LOC . . . I 7 10.041 56.617 89.268 1 115.27 ? O1 LOC 502 B 1 HETATM 16 C C2 LOC . . . I 7 11.223 55.822 89.188 1 114.53 ? C2 LOC 502 B 1 HETATM 17 O O2 LOC . . . I 7 10.771 58.938 87.937 1 119.73 ? O2 LOC 502 B 1 HETATM 18 C C4 LOC . . . I 7 10.251 59.944 88.809 1 118.1 ? C4 LOC 502 B 1 HETATM 19 O O3 LOC . . . I 7 9.519 59.661 85.647 1 118.64 ? O3 LOC 502 B 1 HETATM 20 C C6 LOC . . . I 7 8.734 60.162 84.569 1 117.43 ? C6 LOC 502 B 1 HETATM 21 C C22 LOC . . . I 7 8.391 56.128 87.566 1 120.18 ? C22 LOC 502 B 1 HETATM 22 C C21 LOC . . . I 7 7.831 54.998 88.375 1 121.12 ? C21 LOC 502 B 1 HETATM 23 C C20 LOC . . . I 7 7.311 55.331 89.599 1 119.85 ? C20 LOC 502 B 1 HETATM 24 C C19 LOC . . . I 7 6.761 54.533 90.637 1 119.69 ? C19 LOC 502 B 1 HETATM 25 C C17 LOC . . . I 7 6.607 53.184 90.727 1 121.29 ? C17 LOC 502 B 1 HETATM 26 C C16 LOC . . . I 7 6.896 52.167 89.698 1 122.45 ? C16 LOC 502 B 1 HETATM 27 O O5 LOC . . . I 7 6.623 50.972 89.936 1 122.03 ? O5 LOC 502 B 1 HETATM 28 O O6 LOC . . . I 7 6.205 52.562 91.869 1 120.67 ? O6 LOC 502 B 1 HETATM 29 C C18 LOC . . . I 7 6.102 53.347 93.075 1 120.85 ? C18 LOC 502 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #