data_4X1Y
#
_model_server_result.job_id            WSD6sVN4981pJ6bjswuNhA 
_model_server_result.datetime_utc      '2024-11-23 05:40:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    4X1Y 
#
_exptl.entry_id    4X1Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.437 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X1Y 
_cell.length_a            66.61 
_cell.length_b            127.86 
_cell.length_c            255.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
#
_chem_comp.formula           'C22 H25 N O6' 
_chem_comp.formula_weight    399.437 
_chem_comp.id                LOC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     COLCHICINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C12 LOC doub 402 n n 
C12 C13 LOC sing 403 n n 
C12 N1 LOC sing 404 n n 
N1 C11 LOC sing 405 n n 
C11 C14 LOC sing 406 n n 
C11 C10 LOC sing 407 n n 
C14 C15 LOC doub 408 n n 
C14 C21 LOC sing 409 n n 
C15 C16 LOC sing 410 n n 
C10 C9 LOC sing 411 n n 
C9 C8 LOC sing 412 n n 
C8 C7 LOC doub 413 n y 
C8 C22 LOC sing 414 n y 
C7 C5 LOC sing 415 n y 
C5 C3 LOC doub 416 n y 
C5 O3 LOC sing 417 n n 
C3 C1 LOC sing 418 n y 
C3 O2 LOC sing 419 n n 
C1 O1 LOC sing 420 n n 
C1 C22 LOC doub 421 n y 
O1 C2 LOC sing 422 n n 
O2 C4 LOC sing 423 n n 
O3 C6 LOC sing 424 n n 
C22 C21 LOC sing 425 n n 
C21 C20 LOC doub 426 n n 
C20 C19 LOC sing 427 n n 
C19 C17 LOC doub 428 n n 
C17 C16 LOC sing 429 n n 
C17 O6 LOC sing 430 n n 
C16 O5 LOC doub 431 n n 
O6 C18 LOC sing 432 n n 
C13 H13 LOC sing 433 n n 
C13 H13A LOC sing 434 n n 
C13 H13B LOC sing 435 n n 
N1 HN1 LOC sing 436 n n 
C11 H11 LOC sing 437 n n 
C15 H15 LOC sing 438 n n 
C10 H10 LOC sing 439 n n 
C10 H10A LOC sing 440 n n 
C9 H9 LOC sing 441 n n 
C9 H9A LOC sing 442 n n 
C7 H7 LOC sing 443 n n 
C2 H2 LOC sing 444 n n 
C2 H2A LOC sing 445 n n 
C2 H2B LOC sing 446 n n 
C4 H4 LOC sing 447 n n 
C4 H4A LOC sing 448 n n 
C4 H4B LOC sing 449 n n 
C6 H6 LOC sing 450 n n 
C6 H6A LOC sing 451 n n 
C6 H6B LOC sing 452 n n 
C20 H20 LOC sing 453 n n 
C19 H19 LOC sing 454 n n 
C18 H18 LOC sing 455 n n 
C18 H18A LOC sing 456 n n 
C18 H18B LOC sing 457 n n 
#
_atom_sites.entry_id                     4X1Y 
_atom_sites.fract_transf_matrix[1][1]    0.015013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 GDP B 1 501 600 GDP GDP . 
I 7 LOC B 1 502 601 LOC 618 . 
J 8 3WV B 1 503 1 3WV PFE . 
K 4 GTP C 1 600 600 GTP GTP . 
L 5 MG C 1 601 601 MG MG . 
M 6 GDP D 1 501 600 GDP GDP . 
N 7 LOC D 1 502 601 LOC 618 . 
O 8 3WV D 1 503 1 3WV PFE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 LOC . . . N 7 -17.167 129.408 116.523 1 102.26 ? O4 LOC 502 D 1 
HETATM 2 C C12 LOC . . . N 7 -17.429 128.441 115.814 1 102.25 ? C12 LOC 502 D 1 
HETATM 3 C C13 LOC . . . N 7 -16.46 127.312 115.629 1 100.94 ? C13 LOC 502 D 1 
HETATM 4 N N1 LOC . . . N 7 -18.598 128.332 115.149 1 103.28 ? N1 LOC 502 D 1 
HETATM 5 C C11 LOC . . . N 7 -19.653 129.327 115.286 1 102.83 ? C11 LOC 502 D 1 
HETATM 6 C C14 LOC . . . N 7 -20.496 129.248 116.594 1 102.1 ? C14 LOC 502 D 1 
HETATM 7 C C15 LOC . . . N 7 -20.641 127.994 117.116 1 99.09 ? C15 LOC 502 D 1 
HETATM 8 C C10 LOC . . . N 7 -20.509 129.49 114.022 1 100.48 ? C10 LOC 502 D 1 
HETATM 9 C C9 LOC . . . N 7 -21.619 130.542 114.186 1 97.11 ? C9 LOC 502 D 1 
HETATM 10 C C8 LOC . . . N 7 -21.213 131.795 114.925 1 95.33 ? C8 LOC 502 D 1 
HETATM 11 C C7 LOC . . . N 7 -21.135 132.999 114.224 1 94.77 ? C7 LOC 502 D 1 
HETATM 12 C C5 LOC . . . N 7 -20.695 134.16 114.846 1 93.42 ? C5 LOC 502 D 1 
HETATM 13 C C3 LOC . . . N 7 -20.298 134.129 116.195 1 95.25 ? C3 LOC 502 D 1 
HETATM 14 C C1 LOC . . . N 7 -20.336 132.912 116.905 1 99.03 ? C1 LOC 502 D 1 
HETATM 15 O O1 LOC . . . N 7 -19.831 132.868 118.195 1 102.96 ? O1 LOC 502 D 1 
HETATM 16 C C2 LOC . . . N 7 -18.445 132.539 118.33 1 103.63 ? C2 LOC 502 D 1 
HETATM 17 O O2 LOC . . . N 7 -19.88 135.289 116.832 1 92.07 ? O2 LOC 502 D 1 
HETATM 18 C C4 LOC . . . N 7 -20.887 136.186 117.303 1 88.51 ? C4 LOC 502 D 1 
HETATM 19 O O3 LOC . . . N 7 -20.633 135.388 114.247 1 92.42 ? O3 LOC 502 D 1 
HETATM 20 C C6 LOC . . . N 7 -21.115 135.511 112.919 1 95.36 ? C6 LOC 502 D 1 
HETATM 21 C C22 LOC . . . N 7 -20.837 131.737 116.295 1 97.45 ? C22 LOC 502 D 1 
HETATM 22 C C21 LOC . . . N 7 -21.05 130.481 117.087 1 101.49 ? C21 LOC 502 D 1 
HETATM 23 C C20 LOC . . . N 7 -21.737 130.614 118.275 1 101.25 ? C20 LOC 502 D 1 
HETATM 24 C C19 LOC . . . N 7 -22.101 129.653 119.271 1 99.86 ? C19 LOC 502 D 1 
HETATM 25 C C17 LOC . . . N 7 -21.899 128.304 119.316 1 99.01 ? C17 LOC 502 D 1 
HETATM 26 C C16 LOC . . . N 7 -21.255 127.454 118.3 1 98.64 ? C16 LOC 502 D 1 
HETATM 27 O O5 LOC . . . N 7 -21.27 126.231 118.451 1 99.02 ? O5 LOC 502 D 1 
HETATM 28 O O6 LOC . . . N 7 -22.227 127.535 120.4 1 98.15 ? O6 LOC 502 D 1 
HETATM 29 C C18 LOC . . . N 7 -22.957 128.134 121.497 1 96.37 ? C18 LOC 502 D 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#