data_4X1Y # _model_server_result.job_id x-zPXzMwKVN4AMvA2ePowQ _model_server_result.datetime_utc '2024-11-23 05:42:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 4X1Y # _exptl.entry_id 4X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X1Y _cell.length_a 66.61 _cell.length_b 127.86 _cell.length_c 255.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 289 n n PG O2G GTP sing 290 n n PG O3G GTP sing 291 n n PG O3B GTP sing 292 n n O2G HOG2 GTP sing 293 n n O3G HOG3 GTP sing 294 n n O3B PB GTP sing 295 n n PB O1B GTP doub 296 n n PB O2B GTP sing 297 n n PB O3A GTP sing 298 n n O2B HOB2 GTP sing 299 n n O3A PA GTP sing 300 n n PA O1A GTP doub 301 n n PA O2A GTP sing 302 n n PA O5' GTP sing 303 n n O2A HOA2 GTP sing 304 n n O5' C5' GTP sing 305 n n C5' C4' GTP sing 306 n n C5' H5' GTP sing 307 n n C5' "H5''" GTP sing 308 n n C4' O4' GTP sing 309 n n C4' C3' GTP sing 310 n n C4' H4' GTP sing 311 n n O4' C1' GTP sing 312 n n C3' O3' GTP sing 313 n n C3' C2' GTP sing 314 n n C3' H3' GTP sing 315 n n O3' HO3' GTP sing 316 n n C2' O2' GTP sing 317 n n C2' C1' GTP sing 318 n n C2' H2' GTP sing 319 n n O2' HO2' GTP sing 320 n n C1' N9 GTP sing 321 n n C1' H1' GTP sing 322 n n N9 C8 GTP sing 323 n y N9 C4 GTP sing 324 n y C8 N7 GTP doub 325 n y C8 H8 GTP sing 326 n n N7 C5 GTP sing 327 n y C5 C6 GTP sing 328 n n C5 C4 GTP doub 329 n y C6 O6 GTP doub 330 n n C6 N1 GTP sing 331 n n N1 C2 GTP sing 332 n n N1 HN1 GTP sing 333 n n C2 N2 GTP sing 334 n n C2 N3 GTP doub 335 n n N2 HN21 GTP sing 336 n n N2 HN22 GTP sing 337 n n N3 C4 GTP sing 338 n n # _atom_sites.entry_id 4X1Y _atom_sites.fract_transf_matrix[1][1] 0.015013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WV B 1 503 1 3WV PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WV D 1 503 1 3WV PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 4 6.645 50.373 76.161 1 129.78 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . F 4 7.276 50.877 74.9 1 129.61 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . F 4 5.262 50.937 76.27 1 128.18 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . F 4 7.492 50.651 77.366 1 128 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . F 4 6.492 48.782 76.034 1 128.35 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . F 4 6.074 47.841 77.116 1 124.65 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . F 4 5.868 46.475 76.539 1 120.01 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . F 4 4.825 48.331 77.782 1 124.69 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . F 4 7.238 47.815 78.214 1 127.51 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . F 4 8.211 46.716 78.479 1 129.09 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . F 4 8.278 45.848 77.261 1 131.42 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . F 4 9.556 47.331 78.714 1 128.72 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . F 4 7.705 45.847 79.732 1 127.85 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . F 4 8.196 45.895 81.093 1 129.87 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . F 4 8.946 44.623 81.427 1 133.48 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . F 4 9.801 44.254 80.32 1 136.64 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . F 4 9.859 44.679 82.655 1 133.94 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . F 4 9.842 43.459 83.392 1 133.67 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . F 4 11.233 44.976 82.043 1 133.09 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . F 4 12.315 44.528 82.852 1 129.49 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . F 4 11.148 44.179 80.747 1 136.55 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . F 4 12.018 44.65 79.654 1 139.19 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . F 4 11.943 45.819 78.944 1 139.76 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . F 4 12.804 45.893 77.959 1 142.45 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . F 4 13.506 44.699 78.034 1 144.6 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . F 4 14.643 44.178 77.257 1 146.69 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . F 4 15.185 44.683 76.272 1 146.54 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . F 4 15.1 42.971 77.759 1 146.91 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . F 4 14.568 42.309 78.838 1 146.44 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . F 4 15.21 41.217 79.254 1 146.13 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . F 4 13.504 42.737 79.519 1 145.46 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . F 4 13.036 43.929 79.082 1 142.91 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #