data_4X1Y
#
_model_server_result.job_id            hZW832wrjK8K28cYBbfHmQ 
_model_server_result.datetime_utc      '2024-11-13 06:13:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":600}' 
#
_entry.id    4X1Y 
#
_exptl.entry_id    4X1Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X1Y 
_cell.length_a            66.61 
_cell.length_b            127.86 
_cell.length_c            255.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc4 K O2G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 289 n n 
PG O2G GTP sing 290 n n 
PG O3G GTP sing 291 n n 
PG O3B GTP sing 292 n n 
O2G HOG2 GTP sing 293 n n 
O3G HOG3 GTP sing 294 n n 
O3B PB GTP sing 295 n n 
PB O1B GTP doub 296 n n 
PB O2B GTP sing 297 n n 
PB O3A GTP sing 298 n n 
O2B HOB2 GTP sing 299 n n 
O3A PA GTP sing 300 n n 
PA O1A GTP doub 301 n n 
PA O2A GTP sing 302 n n 
PA O5' GTP sing 303 n n 
O2A HOA2 GTP sing 304 n n 
O5' C5' GTP sing 305 n n 
C5' C4' GTP sing 306 n n 
C5' H5' GTP sing 307 n n 
C5' "H5''" GTP sing 308 n n 
C4' O4' GTP sing 309 n n 
C4' C3' GTP sing 310 n n 
C4' H4' GTP sing 311 n n 
O4' C1' GTP sing 312 n n 
C3' O3' GTP sing 313 n n 
C3' C2' GTP sing 314 n n 
C3' H3' GTP sing 315 n n 
O3' HO3' GTP sing 316 n n 
C2' O2' GTP sing 317 n n 
C2' C1' GTP sing 318 n n 
C2' H2' GTP sing 319 n n 
O2' HO2' GTP sing 320 n n 
C1' N9 GTP sing 321 n n 
C1' H1' GTP sing 322 n n 
N9 C8 GTP sing 323 n y 
N9 C4 GTP sing 324 n y 
C8 N7 GTP doub 325 n y 
C8 H8 GTP sing 326 n n 
N7 C5 GTP sing 327 n y 
C5 C6 GTP sing 328 n n 
C5 C4 GTP doub 329 n y 
C6 O6 GTP doub 330 n n 
C6 N1 GTP sing 331 n n 
N1 C2 GTP sing 332 n n 
N1 HN1 GTP sing 333 n n 
C2 N2 GTP sing 334 n n 
C2 N3 GTP doub 335 n n 
N2 HN21 GTP sing 336 n n 
N2 HN22 GTP sing 337 n n 
N3 C4 GTP sing 338 n n 
#
_atom_sites.entry_id                     4X1Y 
_atom_sites.fract_transf_matrix[1][1]    0.015013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 GDP B 1 501 600 GDP GDP . 
I 7 LOC B 1 502 601 LOC 618 . 
J 8 3WV B 1 503 1 3WV PFE . 
K 4 GTP C 1 600 600 GTP GTP . 
L 5 MG C 1 601 601 MG MG . 
M 6 GDP D 1 501 600 GDP GDP . 
N 7 LOC D 1 502 601 LOC 618 . 
O 8 3WV D 1 503 1 3WV PFE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . K 4 -18.28 125.34 105.123 1 109.64 ? PG GTP 600 C 1 
HETATM 2 O O1G GTP . . . K 4 -17.266 126.081 104.304 1 107.84 ? O1G GTP 600 C 1 
HETATM 3 O O2G GTP . . . K 4 -19.68 125.351 104.578 1 110.57 ? O2G GTP 600 C 1 
HETATM 4 O O3G GTP . . . K 4 -18.32 125.878 106.523 1 106.12 ? O3G GTP 600 C 1 
HETATM 5 O O3B GTP . . . K 4 -17.833 123.8 105.157 1 107.38 ? O3B GTP 600 C 1 
HETATM 6 P PB GTP . . . K 4 -18.316 122.712 106.062 1 104.64 ? PB GTP 600 C 1 
HETATM 7 O O1B GTP . . . K 4 -17.946 121.365 105.522 1 100.45 ? O1B GTP 600 C 1 
HETATM 8 O O2B GTP . . . K 4 -19.803 122.827 106.237 1 104.71 ? O2B GTP 600 C 1 
HETATM 9 O O3A GTP . . . K 4 -17.594 122.937 107.476 1 107.57 ? O3A GTP 600 C 1 
HETATM 10 P PA GTP . . . K 4 -16.318 122.456 108.093 1 106.13 ? PA GTP 600 C 1 
HETATM 11 O O1A GTP . . . K 4 -15.57 121.629 107.091 1 108.46 ? O1A GTP 600 C 1 
HETATM 12 O O2A GTP . . . K 4 -15.472 123.624 108.495 1 104.43 ? O2A GTP 600 C 1 
HETATM 13 O O5' GTP . . . K 4 -16.704 121.584 109.383 1 103.29 ? O5' GTP 600 C 1 
HETATM 14 C C5' GTP . . . K 4 -16.446 121.965 110.747 1 103.89 ? C5' GTP 600 C 1 
HETATM 15 C C4' GTP . . . K 4 -15.545 120.891 111.305 1 106.9 ? C4' GTP 600 C 1 
HETATM 16 O O4' GTP . . . K 4 -14.403 120.725 110.436 1 106.43 ? O4' GTP 600 C 1 
HETATM 17 C C3' GTP . . . K 4 -14.995 121.084 112.721 1 106.92 ? C3' GTP 600 C 1 
HETATM 18 O O3' GTP . . . K 4 -15.005 119.873 113.477 1 104.28 ? O3' GTP 600 C 1 
HETATM 19 C C2' GTP . . . K 4 -13.576 121.606 112.479 1 107.91 ? C2' GTP 600 C 1 
HETATM 20 O O2' GTP . . . K 4 -12.732 121.225 113.565 1 108.75 ? O2' GTP 600 C 1 
HETATM 21 C C1' GTP . . . K 4 -13.209 120.898 111.169 1 105.6 ? C1' GTP 600 C 1 
HETATM 22 N N9 GTP . . . K 4 -12.271 121.619 110.319 1 101.87 ? N9 GTP 600 C 1 
HETATM 23 C C8 GTP . . . K 4 -12.551 122.608 109.417 1 99.43 ? C8 GTP 600 C 1 
HETATM 24 N N7 GTP . . . K 4 -11.542 122.902 108.637 1 100.93 ? N7 GTP 600 C 1 
HETATM 25 C C5 GTP . . . K 4 -10.526 122.057 109.061 1 102.9 ? C5 GTP 600 C 1 
HETATM 26 C C6 GTP . . . K 4 -9.164 121.837 108.571 1 102.49 ? C6 GTP 600 C 1 
HETATM 27 O O6 GTP . . . K 4 -8.624 122.361 107.604 1 101.36 ? O6 GTP 600 C 1 
HETATM 28 N N1 GTP . . . K 4 -8.497 120.861 109.289 1 104.36 ? N1 GTP 600 C 1 
HETATM 29 C C2 GTP . . . K 4 -9.027 120.137 110.326 1 104.97 ? C2 GTP 600 C 1 
HETATM 30 N N2 GTP . . . K 4 -8.258 119.183 110.847 1 104.77 ? N2 GTP 600 C 1 
HETATM 31 N N3 GTP . . . K 4 -10.268 120.31 110.788 1 105.43 ? N3 GTP 600 C 1 
HETATM 32 C C4 GTP . . . K 4 -10.96 121.274 110.113 1 104.38 ? C4 GTP 600 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           32 
#