data_4X20 # _model_server_result.job_id OHPnZMSYLi22SCByFDmiUA _model_server_result.datetime_utc '2024-11-22 23:04:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 4X20 # _exptl.entry_id 4X20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 729.946 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-L-prolyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X20 _cell.length_a 66.24 _cell.length_b 128.27 _cell.length_c 254.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc4 K O3G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C39 H63 N5 O8' _chem_comp.formula_weight 729.946 _chem_comp.id 3WY _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-L-prolyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C25 3WY doub 1 n n C20 C21 3WY doub 2 n y C20 C19 3WY sing 3 n y C21 C22 3WY sing 4 n y C18 C19 3WY sing 5 n n C18 C17 3WY sing 6 n n C19 C24 3WY doub 7 n y C25 O4 3WY sing 8 n n C25 C17 3WY sing 9 n n C22 C23 3WY doub 10 n y C24 C23 3WY sing 11 n y C17 N2 3WY sing 12 n n N2 C16 3WY sing 13 n n C16 O2 3WY doub 14 n n C16 C14 3WY sing 15 n n C11 C10 3WY sing 16 n n C11 C12 3WY sing 17 n n C10 C9 3WY sing 18 n n C14 C15 3WY sing 19 n n C14 C13 3WY sing 20 n n C12 C13 3WY sing 21 n n C12 N1 3WY sing 22 n n C9 N1 3WY sing 23 n n C26 O5 3WY sing 24 n n C13 O5 3WY sing 25 n n N1 C8 3WY sing 26 n n O1 C8 3WY doub 27 n n C8 C7 3WY sing 28 n n C7 C6 3WY sing 29 n n C6 O6 3WY sing 30 n n C6 C5 3WY sing 31 n n C27 O6 3WY sing 32 n n C4 C3 3WY sing 33 n n C5 C3 3WY sing 34 n n C5 N3 3WY sing 35 n n C2 C3 3WY sing 36 n n C2 C1 3WY sing 37 n n C32 C31 3WY sing 38 n n N3 C28 3WY sing 39 n n N3 C29 3WY sing 40 n n C31 C30 3WY sing 41 n n C31 C33 3WY sing 42 n n C30 C29 3WY sing 43 n n C30 N4 3WY sing 44 n n C29 O7 3WY doub 45 n n O8 C34 3WY doub 46 n n N4 C34 3WY sing 47 n n C34 C35 3WY sing 48 n n C37 C36 3WY sing 49 n n C37 C38 3WY sing 50 n n C36 C35 3WY sing 51 n n C35 N5 3WY sing 52 n n C35 C39 3WY sing 53 n n C38 N5 3WY sing 54 n n C36 H1 3WY sing 55 n n C36 H2 3WY sing 56 n n C33 H3 3WY sing 57 n n C33 H4 3WY sing 58 n n C33 H5 3WY sing 59 n n C37 H6 3WY sing 60 n n C37 H7 3WY sing 61 n n C32 H8 3WY sing 62 n n C32 H9 3WY sing 63 n n C32 H10 3WY sing 64 n n C4 H11 3WY sing 65 n n C4 H12 3WY sing 66 n n C4 H13 3WY sing 67 n n N2 H14 3WY sing 68 n n C7 H15 3WY sing 69 n n C7 H16 3WY sing 70 n n C6 H17 3WY sing 71 n n C9 H18 3WY sing 72 n n C9 H19 3WY sing 73 n n C13 H20 3WY sing 74 n n C20 H21 3WY sing 75 n n C21 H22 3WY sing 76 n n N5 H23 3WY sing 77 n n C18 H25 3WY sing 78 n n C18 H26 3WY sing 79 n n C26 H27 3WY sing 80 n n C26 H28 3WY sing 81 n n C26 H29 3WY sing 82 n n C12 H30 3WY sing 83 n n C11 H31 3WY sing 84 n n C11 H32 3WY sing 85 n n C10 H33 3WY sing 86 n n C10 H34 3WY sing 87 n n C14 H35 3WY sing 88 n n C15 H36 3WY sing 89 n n C15 H37 3WY sing 90 n n C15 H38 3WY sing 91 n n C5 H39 3WY sing 92 n n C30 H40 3WY sing 93 n n N4 H41 3WY sing 94 n n C3 H42 3WY sing 95 n n C2 H43 3WY sing 96 n n C2 H44 3WY sing 97 n n C1 H45 3WY sing 98 n n C1 H46 3WY sing 99 n n C1 H47 3WY sing 100 n n C31 H48 3WY sing 101 n n C28 H49 3WY sing 102 n n C28 H50 3WY sing 103 n n C28 H51 3WY sing 104 n n C27 H52 3WY sing 105 n n C27 H53 3WY sing 106 n n C27 H54 3WY sing 107 n n C39 H55 3WY sing 108 n n C39 H56 3WY sing 109 n n C39 H57 3WY sing 110 n n C38 H58 3WY sing 111 n n C38 H59 3WY sing 112 n n C17 H60 3WY sing 113 n n C22 H61 3WY sing 114 n n C23 H62 3WY sing 115 n n C24 H63 3WY sing 116 n n O4 H64 3WY sing 117 n n # _atom_sites.entry_id 4X20 _atom_sites.fract_transf_matrix[1][1] 0.015097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WY B 1 503 1 3WY PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WY D 1 503 1 3WY PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 3WY . . . J 8 7.187 87.309 107.442 1 150.16 ? C36 3WY 503 B 1 HETATM 2 C C35 3WY . . . J 8 6.588 88.718 107.709 1 148.72 ? C35 3WY 503 B 1 HETATM 3 C C37 3WY . . . J 8 5.975 86.478 107.06 1 151.31 ? C37 3WY 503 B 1 HETATM 4 C C34 3WY . . . J 8 6.729 89.477 106.376 1 150.44 ? C34 3WY 503 B 1 HETATM 5 N N5 3WY . . . J 8 5.18 88.477 108.115 1 148.96 ? N5 3WY 503 B 1 HETATM 6 O O8 3WY . . . J 8 5.884 89.35 105.497 1 151.23 ? O8 3WY 503 B 1 HETATM 7 C C39 3WY . . . J 8 7.36 89.432 108.822 1 146.76 ? C39 3WY 503 B 1 HETATM 8 C C38 3WY . . . J 8 4.927 87.035 108.005 1 150.93 ? C38 3WY 503 B 1 HETATM 9 N N4 3WY . . . J 8 7.833 90.217 106.232 1 151.49 ? N4 3WY 503 B 1 HETATM 10 C C30 3WY . . . J 8 8.513 90.413 104.96 1 151.62 ? C30 3WY 503 B 1 HETATM 11 C C29 3WY . . . J 8 9.847 89.677 105.139 1 156.1 ? C29 3WY 503 B 1 HETATM 12 O O7 3WY . . . J 8 10.512 90.009 106.102 1 161.46 ? O7 3WY 503 B 1 HETATM 13 C C31 3WY . . . J 8 8.684 91.925 104.668 1 148.13 ? C31 3WY 503 B 1 HETATM 14 C C33 3WY . . . J 8 9.22 92.745 105.846 1 144.83 ? C33 3WY 503 B 1 HETATM 15 C C32 3WY . . . J 8 9.476 92.202 103.407 1 148.57 ? C32 3WY 503 B 1 HETATM 16 N N3 3WY . . . J 8 10.281 88.683 104.321 1 153.74 ? N3 3WY 503 B 1 HETATM 17 C C6 3WY . . . J 8 10.382 88.757 101.73 1 146.58 ? C6 3WY 503 B 1 HETATM 18 C C3 3WY . . . J 8 8.302 87.431 103.173 1 145.16 ? C3 3WY 503 B 1 HETATM 19 C C5 3WY . . . J 8 9.744 88.064 103.007 1 148.51 ? C5 3WY 503 B 1 HETATM 20 C C7 3WY . . . J 8 9.574 89.02 100.455 1 146.47 ? C7 3WY 503 B 1 HETATM 21 C C8 3WY . . . J 8 10.331 88.636 99.205 1 144.25 ? C8 3WY 503 B 1 HETATM 22 O O6 3WY . . . J 8 11.247 89.837 102.088 1 145.14 ? O6 3WY 503 B 1 HETATM 23 O O1 3WY . . . J 8 10.986 87.609 99.176 1 146.17 ? O1 3WY 503 B 1 HETATM 24 C C2 3WY . . . J 8 8.317 85.902 103.109 1 140.31 ? C2 3WY 503 B 1 HETATM 25 C C1 3WY . . . J 8 8.439 85.226 104.466 1 137.7 ? C1 3WY 503 B 1 HETATM 26 C C4 3WY . . . J 8 7.054 88.029 102.527 1 144.78 ? C4 3WY 503 B 1 HETATM 27 C C28 3WY . . . J 8 11.538 88.035 104.706 1 154.51 ? C28 3WY 503 B 1 HETATM 28 C C27 3WY . . . J 8 12.62 89.641 101.75 1 144.71 ? C27 3WY 503 B 1 HETATM 29 C C10 3WY . . . J 8 10.041 91.39 96.84 1 139.9 ? C10 3WY 503 B 1 HETATM 30 C C15 3WY . . . J 8 15.557 89.283 97.685 1 151.86 ? C15 3WY 503 B 1 HETATM 31 C C14 3WY . . . J 8 14.201 89.461 96.991 1 150.79 ? C14 3WY 503 B 1 HETATM 32 C C26 3WY . . . J 8 13.605 92.215 97.888 1 142.28 ? C26 3WY 503 B 1 HETATM 33 C C16 3WY . . . J 8 13.885 88.169 96.181 1 154.1 ? C16 3WY 503 B 1 HETATM 34 N N1 3WY . . . J 8 10.452 89.562 98.235 1 140.42 ? N1 3WY 503 B 1 HETATM 35 C C12 3WY . . . J 8 11.599 89.622 97.324 1 141.18 ? C12 3WY 503 B 1 HETATM 36 C C11 3WY . . . J 8 11.109 90.546 96.202 1 140.19 ? C11 3WY 503 B 1 HETATM 37 C C9 3WY . . . J 8 9.371 90.471 97.826 1 139.41 ? C9 3WY 503 B 1 HETATM 38 C C13 3WY . . . J 8 12.994 89.838 97.915 1 144.62 ? C13 3WY 503 B 1 HETATM 39 O O5 3WY . . . J 8 13.219 91.05 98.644 1 142.43 ? O5 3WY 503 B 1 HETATM 40 O O2 3WY . . . J 8 13.945 87.037 96.658 1 155.09 ? O2 3WY 503 B 1 HETATM 41 N N2 3WY . . . J 8 13.498 88.413 94.927 1 156.53 ? N2 3WY 503 B 1 HETATM 42 C C17 3WY . . . J 8 12.943 87.375 94.079 1 159.59 ? C17 3WY 503 B 1 HETATM 43 C C25 3WY . . . J 8 14.027 86.516 93.44 1 162.47 ? C25 3WY 503 B 1 HETATM 44 O O3 3WY . . . J 8 15.193 86.598 94.04 1 163.03 ? O3 3WY 503 B 1 HETATM 45 C C18 3WY . . . J 8 12.003 87.985 93.023 1 159.36 ? C18 3WY 503 B 1 HETATM 46 C C19 3WY . . . J 8 10.531 87.807 93.314 1 158.6 ? C19 3WY 503 B 1 HETATM 47 C C20 3WY . . . J 8 9.602 88.732 92.85 1 158.72 ? C20 3WY 503 B 1 HETATM 48 C C24 3WY . . . J 8 10.06 86.666 93.958 1 157.02 ? C24 3WY 503 B 1 HETATM 49 C C21 3WY . . . J 8 8.239 88.505 92.994 1 157.93 ? C21 3WY 503 B 1 HETATM 50 C C23 3WY . . . J 8 8.698 86.443 94.106 1 156.45 ? C23 3WY 503 B 1 HETATM 51 C C22 3WY . . . J 8 7.787 87.358 93.618 1 157.17 ? C22 3WY 503 B 1 HETATM 52 O O4 3WY . . . J 8 13.808 85.795 92.484 1 163.53 ? O4 3WY 503 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #