data_4X20 # _model_server_result.job_id 2bIBh9id2ScjHEuFFGl9NQ _model_server_result.datetime_utc '2024-11-22 23:05:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":503}' # _entry.id 4X20 # _exptl.entry_id 4X20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 729.946 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-L-prolyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X20 _cell.length_a 66.24 _cell.length_b 128.27 _cell.length_c 254.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 145 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc2 F O2G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 F O2B GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc4 K O3G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C39 H63 N5 O8' _chem_comp.formula_weight 729.946 _chem_comp.id 3WY _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-L-prolyl-N-[(3R,4S,5S)-1-{(2S)-2-[(1R,2R)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-1-methoxy-2-methyl-3-oxopropyl]pyrrolidin-1-yl}-3-methoxy-5-methyl-1-oxoheptan-4-yl]-N-methyl-L-valinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C25 3WY doub 1 n n C20 C21 3WY doub 2 n y C20 C19 3WY sing 3 n y C21 C22 3WY sing 4 n y C18 C19 3WY sing 5 n n C18 C17 3WY sing 6 n n C19 C24 3WY doub 7 n y C25 O4 3WY sing 8 n n C25 C17 3WY sing 9 n n C22 C23 3WY doub 10 n y C24 C23 3WY sing 11 n y C17 N2 3WY sing 12 n n N2 C16 3WY sing 13 n n C16 O2 3WY doub 14 n n C16 C14 3WY sing 15 n n C11 C10 3WY sing 16 n n C11 C12 3WY sing 17 n n C10 C9 3WY sing 18 n n C14 C15 3WY sing 19 n n C14 C13 3WY sing 20 n n C12 C13 3WY sing 21 n n C12 N1 3WY sing 22 n n C9 N1 3WY sing 23 n n C26 O5 3WY sing 24 n n C13 O5 3WY sing 25 n n N1 C8 3WY sing 26 n n O1 C8 3WY doub 27 n n C8 C7 3WY sing 28 n n C7 C6 3WY sing 29 n n C6 O6 3WY sing 30 n n C6 C5 3WY sing 31 n n C27 O6 3WY sing 32 n n C4 C3 3WY sing 33 n n C5 C3 3WY sing 34 n n C5 N3 3WY sing 35 n n C2 C3 3WY sing 36 n n C2 C1 3WY sing 37 n n C32 C31 3WY sing 38 n n N3 C28 3WY sing 39 n n N3 C29 3WY sing 40 n n C31 C30 3WY sing 41 n n C31 C33 3WY sing 42 n n C30 C29 3WY sing 43 n n C30 N4 3WY sing 44 n n C29 O7 3WY doub 45 n n O8 C34 3WY doub 46 n n N4 C34 3WY sing 47 n n C34 C35 3WY sing 48 n n C37 C36 3WY sing 49 n n C37 C38 3WY sing 50 n n C36 C35 3WY sing 51 n n C35 N5 3WY sing 52 n n C35 C39 3WY sing 53 n n C38 N5 3WY sing 54 n n C36 H1 3WY sing 55 n n C36 H2 3WY sing 56 n n C33 H3 3WY sing 57 n n C33 H4 3WY sing 58 n n C33 H5 3WY sing 59 n n C37 H6 3WY sing 60 n n C37 H7 3WY sing 61 n n C32 H8 3WY sing 62 n n C32 H9 3WY sing 63 n n C32 H10 3WY sing 64 n n C4 H11 3WY sing 65 n n C4 H12 3WY sing 66 n n C4 H13 3WY sing 67 n n N2 H14 3WY sing 68 n n C7 H15 3WY sing 69 n n C7 H16 3WY sing 70 n n C6 H17 3WY sing 71 n n C9 H18 3WY sing 72 n n C9 H19 3WY sing 73 n n C13 H20 3WY sing 74 n n C20 H21 3WY sing 75 n n C21 H22 3WY sing 76 n n N5 H23 3WY sing 77 n n C18 H25 3WY sing 78 n n C18 H26 3WY sing 79 n n C26 H27 3WY sing 80 n n C26 H28 3WY sing 81 n n C26 H29 3WY sing 82 n n C12 H30 3WY sing 83 n n C11 H31 3WY sing 84 n n C11 H32 3WY sing 85 n n C10 H33 3WY sing 86 n n C10 H34 3WY sing 87 n n C14 H35 3WY sing 88 n n C15 H36 3WY sing 89 n n C15 H37 3WY sing 90 n n C15 H38 3WY sing 91 n n C5 H39 3WY sing 92 n n C30 H40 3WY sing 93 n n N4 H41 3WY sing 94 n n C3 H42 3WY sing 95 n n C2 H43 3WY sing 96 n n C2 H44 3WY sing 97 n n C1 H45 3WY sing 98 n n C1 H46 3WY sing 99 n n C1 H47 3WY sing 100 n n C31 H48 3WY sing 101 n n C28 H49 3WY sing 102 n n C28 H50 3WY sing 103 n n C28 H51 3WY sing 104 n n C27 H52 3WY sing 105 n n C27 H53 3WY sing 106 n n C27 H54 3WY sing 107 n n C39 H55 3WY sing 108 n n C39 H56 3WY sing 109 n n C39 H57 3WY sing 110 n n C38 H58 3WY sing 111 n n C38 H59 3WY sing 112 n n C17 H60 3WY sing 113 n n C22 H61 3WY sing 114 n n C23 H62 3WY sing 115 n n C24 H63 3WY sing 116 n n O4 H64 3WY sing 117 n n # _atom_sites.entry_id 4X20 _atom_sites.fract_transf_matrix[1][1] 0.015097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 501 600 GDP GDP . I 7 LOC B 1 502 601 LOC 618 . J 8 3WY B 1 503 1 3WY PFE . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 501 600 GDP GDP . N 7 LOC D 1 502 601 LOC 618 . O 8 3WY D 1 503 1 3WY PFE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 3WY . . . O 8 -37.537 159.717 135.428 1 162.94 ? C36 3WY 503 D 1 HETATM 2 C C35 3WY . . . O 8 -38.712 160.521 134.788 1 160.44 ? C35 3WY 503 D 1 HETATM 3 C C37 3WY . . . O 8 -38.01 158.27 135.577 1 163.56 ? C37 3WY 503 D 1 HETATM 4 C C34 3WY . . . O 8 -38.254 161.167 133.468 1 157.08 ? C34 3WY 503 D 1 HETATM 5 N N5 3WY . . . O 8 -39.786 159.521 134.531 1 161.35 ? N5 3WY 503 D 1 HETATM 6 O O8 3WY . . . O 8 -38.754 160.81 132.407 1 158.86 ? O8 3WY 503 D 1 HETATM 7 C C39 3WY . . . O 8 -39.214 161.652 135.689 1 160.92 ? C39 3WY 503 D 1 HETATM 8 C C38 3WY . . . O 8 -39.49 158.287 135.239 1 163.13 ? C38 3WY 503 D 1 HETATM 9 N N4 3WY . . . O 8 -37.301 162.111 133.558 1 151.89 ? N4 3WY 503 D 1 HETATM 10 C C30 3WY . . . O 8 -37.077 163.082 132.495 1 147.79 ? C30 3WY 503 D 1 HETATM 11 C C29 3WY . . . O 8 -36.118 162.582 131.401 1 144.54 ? C29 3WY 503 D 1 HETATM 12 O O7 3WY . . . O 8 -36.654 162.26 130.353 1 147.68 ? O7 3WY 503 D 1 HETATM 13 C C31 3WY . . . O 8 -36.907 164.545 132.96 1 147.68 ? C31 3WY 503 D 1 HETATM 14 C C33 3WY . . . O 8 -36.055 164.699 134.216 1 149.42 ? C33 3WY 503 D 1 HETATM 15 C C32 3WY . . . O 8 -36.481 165.509 131.858 1 146.42 ? C32 3WY 503 D 1 HETATM 16 N N3 3WY . . . O 8 -34.769 162.482 131.542 1 137.03 ? N3 3WY 503 D 1 HETATM 17 C C6 3WY . . . O 8 -33.567 162.616 129.176 1 133.03 ? C6 3WY 503 D 1 HETATM 18 C C3 3WY . . . O 8 -34.285 160.196 130.297 1 123.18 ? C3 3WY 503 D 1 HETATM 19 C C5 3WY . . . O 8 -33.921 161.737 130.463 1 131.18 ? C5 3WY 503 D 1 HETATM 20 C C7 3WY . . . O 8 -34.42 162.596 127.905 1 131.94 ? C7 3WY 503 D 1 HETATM 21 C C8 3WY . . . O 8 -33.514 162.716 126.705 1 132.75 ? C8 3WY 503 D 1 HETATM 22 O O6 3WY . . . O 8 -33.084 163.916 129.523 1 136.46 ? O6 3WY 503 D 1 HETATM 23 O O1 3WY . . . O 8 -32.419 162.182 126.715 1 132.15 ? O1 3WY 503 D 1 HETATM 24 C C2 3WY . . . O 8 -34.267 159.437 131.622 1 119.49 ? C2 3WY 503 D 1 HETATM 25 C C1 3WY . . . O 8 -35.629 159.166 132.187 1 118.19 ? C1 3WY 503 D 1 HETATM 26 C C4 3WY . . . O 8 -33.557 159.42 129.204 1 122.3 ? C4 3WY 503 D 1 HETATM 27 C C28 3WY . . . O 8 -33.886 162.888 132.637 1 135.47 ? C28 3WY 503 D 1 HETATM 28 C C27 3WY . . . O 8 -34.04 164.974 129.427 1 138.97 ? C27 3WY 503 D 1 HETATM 29 C C10 3WY . . . O 8 -35.32 164.147 123.946 1 137.65 ? C10 3WY 503 D 1 HETATM 30 C C15 3WY . . . O 8 -29.494 165.792 124.297 1 148.96 ? C15 3WY 503 D 1 HETATM 31 C C14 3WY . . . O 8 -30.736 165.012 123.866 1 147.68 ? C14 3WY 503 D 1 HETATM 32 C C26 3WY . . . O 8 -31.874 166.076 126.976 1 140.35 ? C26 3WY 503 D 1 HETATM 33 C C16 3WY . . . O 8 -30.216 163.695 123.219 1 151.48 ? C16 3WY 503 D 1 HETATM 34 N N1 3WY . . . O 8 -33.892 163.508 125.665 1 135.98 ? N1 3WY 503 D 1 HETATM 35 C C12 3WY . . . O 8 -32.993 163.921 124.578 1 138.89 ? C12 3WY 503 D 1 HETATM 36 C C11 3WY . . . O 8 -33.937 164.648 123.603 1 138.54 ? C11 3WY 503 D 1 HETATM 37 C C9 3WY . . . O 8 -35.27 163.967 125.435 1 137.05 ? C9 3WY 503 D 1 HETATM 38 C C13 3WY . . . O 8 -31.767 164.73 125 1 142.68 ? C13 3WY 503 D 1 HETATM 39 O O5 3WY . . . O 8 -32.155 165.97 125.582 1 141.56 ? O5 3WY 503 D 1 HETATM 40 O O2 3WY . . . O 8 -29.534 162.851 123.799 1 151.66 ? O2 3WY 503 D 1 HETATM 41 N N2 3WY . . . O 8 -30.589 163.578 121.945 1 155.06 ? N2 3WY 503 D 1 HETATM 42 C C17 3WY . . . O 8 -30.127 162.485 121.111 1 157.95 ? C17 3WY 503 D 1 HETATM 43 C C25 3WY . . . O 8 -28.721 162.782 120.609 1 162.24 ? C25 3WY 503 D 1 HETATM 44 O O3 3WY . . . O 8 -27.843 161.882 120.968 1 161.49 ? O3 3WY 503 D 1 HETATM 45 C C18 3WY . . . O 8 -31.098 162.264 119.938 1 155.56 ? C18 3WY 503 D 1 HETATM 46 C C19 3WY . . . O 8 -32.509 161.952 120.373 1 151.24 ? C19 3WY 503 D 1 HETATM 47 C C20 3WY . . . O 8 -33.534 162.864 120.165 1 148.38 ? C20 3WY 503 D 1 HETATM 48 C C24 3WY . . . O 8 -32.816 160.745 120.989 1 149.78 ? C24 3WY 503 D 1 HETATM 49 C C21 3WY . . . O 8 -34.828 162.578 120.568 1 146.87 ? C21 3WY 503 D 1 HETATM 50 C C23 3WY . . . O 8 -34.11 160.461 121.39 1 147.96 ? C23 3WY 503 D 1 HETATM 51 C C22 3WY . . . O 8 -35.113 161.379 121.185 1 147 ? C22 3WY 503 D 1 HETATM 52 O O4 3WY . . . O 8 -28.455 163.784 119.964 1 165.83 ? O4 3WY 503 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #