data_4X2L
#
_model_server_result.job_id            LJHhmWUt5XPg9j4Qrkk39Q 
_model_server_result.datetime_utc      '2024-12-22 03:59:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    4X2L 
#
_exptl.entry_id    4X2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4X2L 
_cell.length_a            103.42 
_cell.length_b            103.42 
_cell.length_c            168.33 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 155 1_555 A SG CYS 375 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 A SG CYS 233 A CYS 217 1_555 A SG CYS 398 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 285 A CYS 269 1_555 A SG CYS 335 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 A O HIS 197 A HIS 181 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 A O TYR 200 A TYR 184 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc3 A OG SER 344 A SER 328 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc4 E NA NA . A NA 404 1_555 L O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc5 E NA NA . A NA 404 1_555 L O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 167 n n 
C1 C2 GOL sing 168 n n 
C1 H11 GOL sing 169 n n 
C1 H12 GOL sing 170 n n 
O1 HO1 GOL sing 171 n n 
C2 O2 GOL sing 172 n n 
C2 C3 GOL sing 173 n n 
C2 H2 GOL sing 174 n n 
O2 HO2 GOL sing 175 n n 
C3 O3 GOL sing 176 n n 
C3 H31 GOL sing 177 n n 
C3 H32 GOL sing 178 n n 
O3 HO3 GOL sing 179 n n 
#
_atom_sites.entry_id                     4X2L 
_atom_sites.fract_transf_matrix[1][1]    0.009669 
_atom_sites.fract_transf_matrix[1][2]    0.005583 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3WP A 1 401 1 3WP PFE . 
C 3 IOD A 1 402 1 IOD I . 
D 3 IOD A 1 403 2 IOD I . 
E 4 NA A 1 404 1 NA NA . 
F 4 NA A 1 405 2 NA NA . 
G 5 GOL A 1 406 1 GOL GOL . 
H 5 GOL A 1 407 2 GOL GOL . 
I 5 GOL A 1 408 3 GOL GOL . 
J 6 DMS A 1 409 1 DMS DMS . 
K 6 DMS A 1 410 2 DMS DMS . 
L 7 HOH A 1 501 89 HOH HOH . 
L 7 HOH A 2 502 51 HOH HOH . 
L 7 HOH A 3 503 86 HOH HOH . 
L 7 HOH A 4 504 29 HOH HOH . 
L 7 HOH A 5 505 1 HOH HOH . 
L 7 HOH A 6 506 52 HOH HOH . 
L 7 HOH A 7 507 59 HOH HOH . 
L 7 HOH A 8 508 30 HOH HOH . 
L 7 HOH A 9 509 78 HOH HOH . 
L 7 HOH A 10 510 26 HOH HOH . 
L 7 HOH A 11 511 69 HOH HOH . 
L 7 HOH A 12 512 80 HOH HOH . 
L 7 HOH A 13 513 74 HOH HOH . 
L 7 HOH A 14 514 32 HOH HOH . 
L 7 HOH A 15 515 17 HOH HOH . 
L 7 HOH A 16 516 28 HOH HOH . 
L 7 HOH A 17 517 23 HOH HOH . 
L 7 HOH A 18 518 87 HOH HOH . 
L 7 HOH A 19 519 16 HOH HOH . 
L 7 HOH A 20 520 70 HOH HOH . 
L 7 HOH A 21 521 38 HOH HOH . 
L 7 HOH A 22 522 79 HOH HOH . 
L 7 HOH A 23 523 75 HOH HOH . 
L 7 HOH A 24 524 40 HOH HOH . 
L 7 HOH A 25 525 88 HOH HOH . 
L 7 HOH A 26 526 77 HOH HOH . 
L 7 HOH A 27 527 2 HOH HOH . 
L 7 HOH A 28 528 3 HOH HOH . 
L 7 HOH A 29 529 4 HOH HOH . 
L 7 HOH A 30 530 5 HOH HOH . 
L 7 HOH A 31 531 6 HOH HOH . 
L 7 HOH A 32 532 7 HOH HOH . 
L 7 HOH A 33 533 8 HOH HOH . 
L 7 HOH A 34 534 9 HOH HOH . 
L 7 HOH A 35 535 10 HOH HOH . 
L 7 HOH A 36 536 11 HOH HOH . 
L 7 HOH A 37 537 12 HOH HOH . 
L 7 HOH A 38 538 13 HOH HOH . 
L 7 HOH A 39 539 14 HOH HOH . 
L 7 HOH A 40 540 15 HOH HOH . 
L 7 HOH A 41 541 18 HOH HOH . 
L 7 HOH A 42 542 19 HOH HOH . 
L 7 HOH A 43 543 20 HOH HOH . 
L 7 HOH A 44 544 21 HOH HOH . 
L 7 HOH A 45 545 22 HOH HOH . 
L 7 HOH A 46 546 24 HOH HOH . 
L 7 HOH A 47 547 25 HOH HOH . 
L 7 HOH A 48 548 27 HOH HOH . 
L 7 HOH A 49 549 31 HOH HOH . 
L 7 HOH A 50 550 33 HOH HOH . 
L 7 HOH A 51 551 34 HOH HOH . 
L 7 HOH A 52 552 35 HOH HOH . 
L 7 HOH A 53 553 36 HOH HOH . 
L 7 HOH A 54 554 37 HOH HOH . 
L 7 HOH A 55 555 39 HOH HOH . 
L 7 HOH A 56 556 41 HOH HOH . 
L 7 HOH A 57 557 42 HOH HOH . 
L 7 HOH A 58 558 43 HOH HOH . 
L 7 HOH A 59 559 44 HOH HOH . 
L 7 HOH A 60 560 45 HOH HOH . 
L 7 HOH A 61 561 46 HOH HOH . 
L 7 HOH A 62 562 47 HOH HOH . 
L 7 HOH A 63 563 48 HOH HOH . 
L 7 HOH A 64 564 49 HOH HOH . 
L 7 HOH A 65 565 50 HOH HOH . 
L 7 HOH A 66 566 53 HOH HOH . 
L 7 HOH A 67 567 54 HOH HOH . 
L 7 HOH A 68 568 55 HOH HOH . 
L 7 HOH A 69 569 56 HOH HOH . 
L 7 HOH A 70 570 57 HOH HOH . 
L 7 HOH A 71 571 58 HOH HOH . 
L 7 HOH A 72 572 60 HOH HOH . 
L 7 HOH A 73 573 61 HOH HOH . 
L 7 HOH A 74 574 62 HOH HOH . 
L 7 HOH A 75 575 63 HOH HOH . 
L 7 HOH A 76 576 64 HOH HOH . 
L 7 HOH A 77 577 65 HOH HOH . 
L 7 HOH A 78 578 66 HOH HOH . 
L 7 HOH A 79 579 67 HOH HOH . 
L 7 HOH A 80 580 68 HOH HOH . 
L 7 HOH A 81 581 71 HOH HOH . 
L 7 HOH A 82 582 72 HOH HOH . 
L 7 HOH A 83 583 73 HOH HOH . 
L 7 HOH A 84 584 76 HOH HOH . 
L 7 HOH A 85 585 81 HOH HOH . 
L 7 HOH A 86 586 82 HOH HOH . 
L 7 HOH A 87 587 83 HOH HOH . 
L 7 HOH A 88 588 84 HOH HOH . 
L 7 HOH A 89 589 85 HOH HOH . 
L 7 HOH A 90 590 90 HOH HOH . 
L 7 HOH A 91 591 91 HOH HOH . 
L 7 HOH A 92 592 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 12.554 -33.153 20.487 1 88.36 ? C1 GOL 408 A 1 
HETATM 2 O O1 GOL . . . I 5 12.564 -33.605 19.137 1 85.55 ? O1 GOL 408 A 1 
HETATM 3 C C2 GOL . . . I 5 11.918 -31.789 20.606 1 90.89 ? C2 GOL 408 A 1 
HETATM 4 O O2 GOL . . . I 5 10.732 -31.744 19.802 1 92.34 ? O2 GOL 408 A 1 
HETATM 5 C C3 GOL . . . I 5 12.886 -30.705 20.188 1 89.71 ? C3 GOL 408 A 1 
HETATM 6 O O3 GOL . . . I 5 13.813 -30.416 21.228 1 89.02 ? O3 GOL 408 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           385 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#