data_4X3C # _model_server_result.job_id -IHb9D6TlheFs7eJ-wksfA _model_server_result.datetime_utc '2024-10-20 03:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4X3C # _exptl.entry_id 4X3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X3C _cell.length_a 112.02 _cell.length_b 112.02 _cell.length_c 136.47 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_767 -x+2,-x+y+1,-z+7/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 168.03 97.012166 318.43 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 537 NAG 2 n B NAG 2 B 2 NAG A 538 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 67 1_555 A SG CYS 93 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 253 A CYS 254 1_555 A SG CYS 264 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 401 A CYS 402 1_555 A SG CYS 520 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 58 A ASN 59 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 A ND2 ASN 415 A ASN 416 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4X3C _atom_sites.fract_transf_matrix[1][1] 0.008927 _atom_sites.fract_transf_matrix[1][2] 0.005154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 536 NAG NAG . D 4 TNH A 1 602 1 TNH TNH . E 5 HOH A 1 701 189 HOH HOH . E 5 HOH A 2 702 132 HOH HOH . E 5 HOH A 3 703 97 HOH HOH . E 5 HOH A 4 704 108 HOH HOH . E 5 HOH A 5 705 107 HOH HOH . E 5 HOH A 6 706 22 HOH HOH . E 5 HOH A 7 707 100 HOH HOH . E 5 HOH A 8 708 89 HOH HOH . E 5 HOH A 9 709 4 HOH HOH . E 5 HOH A 10 710 48 HOH HOH . E 5 HOH A 11 711 147 HOH HOH . E 5 HOH A 12 712 116 HOH HOH . E 5 HOH A 13 713 63 HOH HOH . E 5 HOH A 14 714 157 HOH HOH . E 5 HOH A 15 715 71 HOH HOH . E 5 HOH A 16 716 66 HOH HOH . E 5 HOH A 17 717 5 HOH HOH . E 5 HOH A 18 718 78 HOH HOH . E 5 HOH A 19 719 19 HOH HOH . E 5 HOH A 20 720 6 HOH HOH . E 5 HOH A 21 721 55 HOH HOH . E 5 HOH A 22 722 120 HOH HOH . E 5 HOH A 23 723 1 HOH HOH . E 5 HOH A 24 724 179 HOH HOH . E 5 HOH A 25 725 202 HOH HOH . E 5 HOH A 26 726 27 HOH HOH . E 5 HOH A 27 727 94 HOH HOH . E 5 HOH A 28 728 25 HOH HOH . E 5 HOH A 29 729 85 HOH HOH . E 5 HOH A 30 730 129 HOH HOH . E 5 HOH A 31 731 203 HOH HOH . E 5 HOH A 32 732 231 HOH HOH . E 5 HOH A 33 733 77 HOH HOH . E 5 HOH A 34 734 178 HOH HOH . E 5 HOH A 35 735 14 HOH HOH . E 5 HOH A 36 736 15 HOH HOH . E 5 HOH A 37 737 136 HOH HOH . E 5 HOH A 38 738 124 HOH HOH . E 5 HOH A 39 739 65 HOH HOH . E 5 HOH A 40 740 69 HOH HOH . E 5 HOH A 41 741 34 HOH HOH . E 5 HOH A 42 742 31 HOH HOH . E 5 HOH A 43 743 154 HOH HOH . E 5 HOH A 44 744 155 HOH HOH . E 5 HOH A 45 745 29 HOH HOH . E 5 HOH A 46 746 23 HOH HOH . E 5 HOH A 47 747 103 HOH HOH . E 5 HOH A 48 748 105 HOH HOH . E 5 HOH A 49 749 196 HOH HOH . E 5 HOH A 50 750 30 HOH HOH . E 5 HOH A 51 751 47 HOH HOH . E 5 HOH A 52 752 11 HOH HOH . E 5 HOH A 53 753 33 HOH HOH . E 5 HOH A 54 754 21 HOH HOH . E 5 HOH A 55 755 96 HOH HOH . E 5 HOH A 56 756 86 HOH HOH . E 5 HOH A 57 757 20 HOH HOH . E 5 HOH A 58 758 80 HOH HOH . E 5 HOH A 59 759 13 HOH HOH . E 5 HOH A 60 760 2 HOH HOH . E 5 HOH A 61 761 3 HOH HOH . E 5 HOH A 62 762 117 HOH HOH . E 5 HOH A 63 763 59 HOH HOH . E 5 HOH A 64 764 115 HOH HOH . E 5 HOH A 65 765 41 HOH HOH . E 5 HOH A 66 766 166 HOH HOH . E 5 HOH A 67 767 163 HOH HOH . E 5 HOH A 68 768 99 HOH HOH . E 5 HOH A 69 769 113 HOH HOH . E 5 HOH A 70 770 16 HOH HOH . E 5 HOH A 71 771 61 HOH HOH . E 5 HOH A 72 772 207 HOH HOH . E 5 HOH A 73 773 227 HOH HOH . E 5 HOH A 74 774 56 HOH HOH . E 5 HOH A 75 775 9 HOH HOH . E 5 HOH A 76 776 45 HOH HOH . E 5 HOH A 77 777 187 HOH HOH . E 5 HOH A 78 778 8 HOH HOH . E 5 HOH A 79 779 38 HOH HOH . E 5 HOH A 80 780 118 HOH HOH . E 5 HOH A 81 781 102 HOH HOH . E 5 HOH A 82 782 143 HOH HOH . E 5 HOH A 83 783 75 HOH HOH . E 5 HOH A 84 784 76 HOH HOH . E 5 HOH A 85 785 49 HOH HOH . E 5 HOH A 86 786 93 HOH HOH . E 5 HOH A 87 787 57 HOH HOH . E 5 HOH A 88 788 138 HOH HOH . E 5 HOH A 89 789 204 HOH HOH . E 5 HOH A 90 790 228 HOH HOH . E 5 HOH A 91 791 67 HOH HOH . E 5 HOH A 92 792 53 HOH HOH . E 5 HOH A 93 793 68 HOH HOH . E 5 HOH A 94 794 110 HOH HOH . E 5 HOH A 95 795 213 HOH HOH . E 5 HOH A 96 796 159 HOH HOH . E 5 HOH A 97 797 142 HOH HOH . E 5 HOH A 98 798 60 HOH HOH . E 5 HOH A 99 799 167 HOH HOH . E 5 HOH A 100 800 10 HOH HOH . E 5 HOH A 101 801 54 HOH HOH . E 5 HOH A 102 802 104 HOH HOH . E 5 HOH A 103 803 18 HOH HOH . E 5 HOH A 104 804 148 HOH HOH . E 5 HOH A 105 805 123 HOH HOH . E 5 HOH A 106 806 212 HOH HOH . E 5 HOH A 107 807 88 HOH HOH . E 5 HOH A 108 808 217 HOH HOH . E 5 HOH A 109 809 28 HOH HOH . E 5 HOH A 110 810 160 HOH HOH . E 5 HOH A 111 811 26 HOH HOH . E 5 HOH A 112 812 44 HOH HOH . E 5 HOH A 113 813 220 HOH HOH . E 5 HOH A 114 814 152 HOH HOH . E 5 HOH A 115 815 190 HOH HOH . E 5 HOH A 116 816 130 HOH HOH . E 5 HOH A 117 817 137 HOH HOH . E 5 HOH A 118 818 37 HOH HOH . E 5 HOH A 119 819 82 HOH HOH . E 5 HOH A 120 820 50 HOH HOH . E 5 HOH A 121 821 215 HOH HOH . E 5 HOH A 122 822 216 HOH HOH . E 5 HOH A 123 823 126 HOH HOH . E 5 HOH A 124 824 36 HOH HOH . E 5 HOH A 125 825 64 HOH HOH . E 5 HOH A 126 826 12 HOH HOH . E 5 HOH A 127 827 230 HOH HOH . E 5 HOH A 128 828 226 HOH HOH . E 5 HOH A 129 829 191 HOH HOH . E 5 HOH A 130 830 35 HOH HOH . E 5 HOH A 131 831 62 HOH HOH . E 5 HOH A 132 832 32 HOH HOH . E 5 HOH A 133 833 173 HOH HOH . E 5 HOH A 134 834 72 HOH HOH . E 5 HOH A 135 835 42 HOH HOH . E 5 HOH A 136 836 81 HOH HOH . E 5 HOH A 137 837 7 HOH HOH . E 5 HOH A 138 838 193 HOH HOH . E 5 HOH A 139 839 91 HOH HOH . E 5 HOH A 140 840 92 HOH HOH . E 5 HOH A 141 841 119 HOH HOH . E 5 HOH A 142 842 17 HOH HOH . E 5 HOH A 143 843 58 HOH HOH . E 5 HOH A 144 844 218 HOH HOH . E 5 HOH A 145 845 127 HOH HOH . E 5 HOH A 146 846 98 HOH HOH . E 5 HOH A 147 847 74 HOH HOH . E 5 HOH A 148 848 176 HOH HOH . E 5 HOH A 149 849 201 HOH HOH . E 5 HOH A 150 850 209 HOH HOH . E 5 HOH A 151 851 188 HOH HOH . E 5 HOH A 152 852 172 HOH HOH . E 5 HOH A 153 853 87 HOH HOH . E 5 HOH A 154 854 112 HOH HOH . E 5 HOH A 155 855 24 HOH HOH . E 5 HOH A 156 856 111 HOH HOH . E 5 HOH A 157 857 121 HOH HOH . E 5 HOH A 158 858 156 HOH HOH . E 5 HOH A 159 859 222 HOH HOH . E 5 HOH A 160 860 114 HOH HOH . E 5 HOH A 161 861 52 HOH HOH . E 5 HOH A 162 862 95 HOH HOH . E 5 HOH A 163 863 197 HOH HOH . E 5 HOH A 164 864 43 HOH HOH . E 5 HOH A 165 865 51 HOH HOH . E 5 HOH A 166 866 229 HOH HOH . E 5 HOH A 167 867 174 HOH HOH . E 5 HOH A 168 868 39 HOH HOH . E 5 HOH A 169 869 40 HOH HOH . E 5 HOH A 170 870 106 HOH HOH . E 5 HOH A 171 871 225 HOH HOH . E 5 HOH A 172 872 219 HOH HOH . E 5 HOH A 173 873 221 HOH HOH . E 5 HOH A 174 874 224 HOH HOH . E 5 HOH A 175 875 84 HOH HOH . E 5 HOH A 176 876 101 HOH HOH . E 5 HOH A 177 877 223 HOH HOH . E 5 HOH A 178 878 186 HOH HOH . E 5 HOH A 179 879 109 HOH HOH . E 5 HOH A 180 880 145 HOH HOH . E 5 HOH A 181 881 162 HOH HOH . E 5 HOH A 182 882 192 HOH HOH . E 5 HOH A 183 883 146 HOH HOH . E 5 HOH A 184 884 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 81.951 167.659 140.571 1 45.1 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . C 3 83.493 167.721 140.593 1 50.75 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . C 3 84.065 166.777 141.673 1 51.67 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . C 3 83.506 167.152 143.069 1 56.16 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . C 3 81.957 167.302 143.059 1 51.03 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . C 3 81.215 167.712 144.401 1 46.54 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . C 3 83.911 168.414 138.284 1 49.2 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . C 3 84.424 168.074 136.909 1 47.47 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . C 3 83.996 167.484 139.242 1 51.12 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . C 3 85.488 166.73 141.656 1 45.2 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . C 3 83.936 166.197 144.03 1 63.8 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . C 3 81.571 168.077 141.903 1 50.23 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . C 3 81.337 168.992 145.03 1 39.07 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . C 3 83.44 169.529 138.503 1 48.07 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #