data_4X3J # _model_server_result.job_id EzZ_dC8RtzQgdruIAEgBow _model_server_result.datetime_utc '2024-11-16 23:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4X3J # _exptl.entry_id 4X3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(4-amino-5-oxopyrido[2,3-d]pyrimidin-8(5H)-yl)phenyl]-3-[2-fluoro-5-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X3J _cell.length_a 62.456 _cell.length_b 62.456 _cell.length_c 178.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H14 F4 N6 O2' _chem_comp.formula_weight 458.368 _chem_comp.id 3WR _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(4-amino-5-oxopyrido[2,3-d]pyrimidin-8(5H)-yl)phenyl]-3-[2-fluoro-5-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C8 3WR sing 1 n n O13 C7 3WR doub 2 n n C7 C3 3WR sing 3 n n C7 C12 3WR sing 4 n n C8 C3 3WR doub 5 n y C8 N14 3WR sing 6 n y C3 C1 3WR sing 7 n y N14 C9 3WR doub 8 n y C12 C6 3WR doub 9 n n C9 N4 3WR sing 10 n y C6 N2 3WR sing 11 n n C1 N4 3WR doub 12 n y C1 N2 3WR sing 13 n n N2 C5 3WR sing 14 n n C5 C10 3WR doub 15 n y C5 C11 3WR sing 16 n y C10 C16 3WR sing 17 n y C11 C17 3WR doub 18 n y C16 C18 3WR doub 19 n y C17 C18 3WR sing 20 n y C18 N19 3WR sing 21 n n N19 C20 3WR sing 22 n n O22 C20 3WR doub 23 n n C20 N21 3WR sing 24 n n N21 C23 3WR sing 25 n n F33 C30 3WR sing 26 n n C24 C23 3WR doub 27 n y C24 C26 3WR sing 28 n y C23 C25 3WR sing 29 n y F31 C30 3WR sing 30 n n C30 C26 3WR sing 31 n n C30 F32 3WR sing 32 n n C26 C29 3WR doub 33 n y C25 F28 3WR sing 34 n n C25 C27 3WR doub 35 n y C29 C27 3WR sing 36 n y C9 H1 3WR sing 37 n n C10 H2 3WR sing 38 n n C11 H3 3WR sing 39 n n C12 H4 3WR sing 40 n n C16 H5 3WR sing 41 n n C24 H6 3WR sing 42 n n C27 H7 3WR sing 43 n n C6 H8 3WR sing 44 n n N15 H9 3WR sing 45 n n N15 H10 3WR sing 46 n n C17 H11 3WR sing 47 n n N19 H12 3WR sing 48 n n N21 H13 3WR sing 49 n n C29 H14 3WR sing 50 n n # _atom_sites.entry_id 4X3J _atom_sites.fract_transf_matrix[1][1] 0.016011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3WR A 1 1201 1 3WR INH . C 3 HOH A 1 1301 14 HOH HOH . C 3 HOH A 2 1302 11 HOH HOH . C 3 HOH A 3 1303 12 HOH HOH . C 3 HOH A 4 1304 17 HOH HOH . C 3 HOH A 5 1305 9 HOH HOH . C 3 HOH A 6 1306 1 HOH HOH . C 3 HOH A 7 1307 2 HOH HOH . C 3 HOH A 8 1308 3 HOH HOH . C 3 HOH A 9 1309 4 HOH HOH . C 3 HOH A 10 1310 5 HOH HOH . C 3 HOH A 11 1311 6 HOH HOH . C 3 HOH A 12 1312 7 HOH HOH . C 3 HOH A 13 1313 8 HOH HOH . C 3 HOH A 14 1314 10 HOH HOH . C 3 HOH A 15 1315 13 HOH HOH . C 3 HOH A 16 1316 15 HOH HOH . C 3 HOH A 17 1317 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3WR . . . B 2 22.645 32.024 56.692 1 80.83 ? C1 3WR 1201 A 1 HETATM 2 C C3 3WR . . . B 2 22.805 31.741 55.294 1 79.28 ? C3 3WR 1201 A 1 HETATM 3 C C7 3WR . . . B 2 21.757 30.946 54.616 1 78.63 ? C7 3WR 1201 A 1 HETATM 4 C C8 3WR . . . B 2 23.96 32.24 54.631 1 78.71 ? C8 3WR 1201 A 1 HETATM 5 C C9 3WR . . . B 2 24.67 33.187 56.646 1 82.09 ? C9 3WR 1201 A 1 HETATM 6 C C10 3WR . . . B 2 20.247 31.572 59.465 1 79.28 ? C10 3WR 1201 A 1 HETATM 7 C C11 3WR . . . B 2 22.594 31.015 59.56 1 82.11 ? C11 3WR 1201 A 1 HETATM 8 C C12 3WR . . . B 2 20.621 30.558 55.382 1 77.13 ? C12 3WR 1201 A 1 HETATM 9 C C16 3WR . . . B 2 20.161 31.392 60.843 1 80.69 ? C16 3WR 1201 A 1 HETATM 10 C C20 3WR . . . B 2 21.477 29.704 63.605 1 80.25 ? C20 3WR 1201 A 1 HETATM 11 C C24 3WR . . . B 2 22.576 27.692 65.679 1 81.85 ? C24 3WR 1201 A 1 HETATM 12 C C27 3WR . . . B 2 20.534 26.896 67.408 1 84.08 ? C27 3WR 1201 A 1 HETATM 13 C C30 3WR . . . B 2 23.986 25.759 66.32 1 79.54 ? C30 3WR 1201 A 1 HETATM 14 N N2 3WR . . . B 2 21.549 31.484 57.377 1 79.01 ? N2 3WR 1201 A 1 HETATM 15 N N4 3WR . . . B 2 23.607 32.749 57.299 1 82.02 ? N4 3WR 1201 A 1 HETATM 16 C C5 3WR . . . B 2 21.475 31.41 58.799 1 80.56 ? C5 3WR 1201 A 1 HETATM 17 C C6 3WR . . . B 2 20.54 30.867 56.69 1 75.38 ? C6 3WR 1201 A 1 HETATM 18 O O13 3WR . . . B 2 21.829 30.645 53.431 1 78.74 ? O13 3WR 1201 A 1 HETATM 19 N N14 3WR . . . B 2 24.835 32.962 55.35 1 81.94 ? N14 3WR 1201 A 1 HETATM 20 N N15 3WR . . . B 2 24.193 32.032 53.284 1 75.2 ? N15 3WR 1201 A 1 HETATM 21 C C17 3WR . . . B 2 22.521 30.861 60.936 1 82.07 ? C17 3WR 1201 A 1 HETATM 22 C C18 3WR . . . B 2 21.297 31.057 61.593 1 81.84 ? C18 3WR 1201 A 1 HETATM 23 N N19 3WR . . . B 2 21.139 30.864 62.981 1 81.14 ? N19 3WR 1201 A 1 HETATM 24 N N21 3WR . . . B 2 21.191 29.583 64.93 1 83 ? N21 3WR 1201 A 1 HETATM 25 O O22 3WR . . . B 2 22.038 28.806 62.99 1 75.84 ? O22 3WR 1201 A 1 HETATM 26 C C23 3WR . . . B 2 21.396 28.431 65.724 1 83.28 ? C23 3WR 1201 A 1 HETATM 27 C C25 3WR . . . B 2 20.379 28.02 66.597 1 84.78 ? C25 3WR 1201 A 1 HETATM 28 C C26 3WR . . . B 2 22.726 26.564 66.47 1 81.74 ? C26 3WR 1201 A 1 HETATM 29 F F28 3WR . . . B 2 19.226 28.718 66.648 1 85.41 ? F28 3WR 1201 A 1 HETATM 30 C C29 3WR . . . B 2 21.7 26.147 67.321 1 83.54 ? C29 3WR 1201 A 1 HETATM 31 F F31 3WR . . . B 2 25.096 26.609 66.21 1 78.67 ? F31 3WR 1201 A 1 HETATM 32 F F32 3WR . . . B 2 24.141 24.863 67.376 1 78.93 ? F32 3WR 1201 A 1 HETATM 33 F F33 3WR . . . B 2 23.847 25 65.159 1 80.15 ? F33 3WR 1201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #