data_4X3K
#
_model_server_result.job_id            N7EuK48rTAJ2Xe5yqS-_Ng 
_model_server_result.datetime_utc      '2024-11-04 20:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    4X3K 
#
_exptl.entry_id    4X3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.8 
_cell.angle_gamma         90 
_cell.entry_id            4X3K 
_cell.length_a            45.46 
_cell.length_b            33.23 
_cell.length_c            46.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 5 1_555 E NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A OE1 GLU 6 A GLU 8 1_555 E NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc3 A NE2 HIS 45 A HIS 47 1_555 E NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc4 B ND1 HIS 3 B HIS 5 1_555 F NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 B OE1 GLU 6 B GLU 8 1_555 F NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
metalc ? metalc6 B NE2 HIS 45 B HIS 47 1_555 F NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc7 B OE2 GLU 56 B GLU 58 1_555 G K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc8 B OE2 GLU 59 B GLU 61 1_555 G K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? 
covale ? covale1 C C ARG 4 C ARG 4 1_555 C N M3L 5 C M3L 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 C C M3L 5 C M3L 5 1_555 C N SER 6 C SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale3 D C ARG 4 D ARG 4 1_555 D N M3L 5 D M3L 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 D C M3L 5 D M3L 5 1_555 D N SER 6 D SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc9 A OE2 GLU 57 A GLU 59 1_555 F NI NI . B NI 101 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc10 B OE2 GLU 57 B GLU 59 1_555 E NI NI . A NI 101 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4X3K 
_atom_sites.fract_transf_matrix[1][1]    0.021997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002234 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI A 1 101 1 NI NI . 
F 3 NI B 1 101 2 NI NI . 
G 4 K B 1 102 1 K K . 
H 5 HOH A 1 201 161 HOH HOH . 
H 5 HOH A 2 202 139 HOH HOH . 
H 5 HOH A 3 203 158 HOH HOH . 
H 5 HOH A 4 204 136 HOH HOH . 
H 5 HOH A 5 205 69 HOH HOH . 
H 5 HOH A 6 206 107 HOH HOH . 
H 5 HOH A 7 207 25 HOH HOH . 
H 5 HOH A 8 208 6 HOH HOH . 
H 5 HOH A 9 209 85 HOH HOH . 
H 5 HOH A 10 210 37 HOH HOH . 
H 5 HOH A 11 211 71 HOH HOH . 
H 5 HOH A 12 212 56 HOH HOH . 
H 5 HOH A 13 213 5 HOH HOH . 
H 5 HOH A 14 214 149 HOH HOH . 
H 5 HOH A 15 215 35 HOH HOH . 
H 5 HOH A 16 216 20 HOH HOH . 
H 5 HOH A 17 217 17 HOH HOH . 
H 5 HOH A 18 218 65 HOH HOH . 
H 5 HOH A 19 219 110 HOH HOH . 
H 5 HOH A 20 220 30 HOH HOH . 
H 5 HOH A 21 221 31 HOH HOH . 
H 5 HOH A 22 222 8 HOH HOH . 
H 5 HOH A 23 223 28 HOH HOH . 
H 5 HOH A 24 224 74 HOH HOH . 
H 5 HOH A 25 225 53 HOH HOH . 
H 5 HOH A 26 226 52 HOH HOH . 
H 5 HOH A 27 227 38 HOH HOH . 
H 5 HOH A 28 228 62 HOH HOH . 
H 5 HOH A 29 229 156 HOH HOH . 
H 5 HOH A 30 230 34 HOH HOH . 
H 5 HOH A 31 231 78 HOH HOH . 
H 5 HOH A 32 232 129 HOH HOH . 
H 5 HOH A 33 233 159 HOH HOH . 
H 5 HOH A 34 234 88 HOH HOH . 
H 5 HOH A 35 235 148 HOH HOH . 
H 5 HOH A 36 236 164 HOH HOH . 
H 5 HOH A 37 237 99 HOH HOH . 
H 5 HOH A 38 238 97 HOH HOH . 
H 5 HOH A 39 239 92 HOH HOH . 
H 5 HOH A 40 240 141 HOH HOH . 
H 5 HOH A 41 241 142 HOH HOH . 
H 5 HOH A 42 242 100 HOH HOH . 
H 5 HOH A 43 243 163 HOH HOH . 
H 5 HOH A 44 244 3 HOH HOH . 
H 5 HOH A 45 245 4 HOH HOH . 
H 5 HOH A 46 246 13 HOH HOH . 
H 5 HOH A 47 247 14 HOH HOH . 
H 5 HOH A 48 248 15 HOH HOH . 
H 5 HOH A 49 249 16 HOH HOH . 
H 5 HOH A 50 250 18 HOH HOH . 
H 5 HOH A 51 251 26 HOH HOH . 
H 5 HOH A 52 252 27 HOH HOH . 
H 5 HOH A 53 253 36 HOH HOH . 
H 5 HOH A 54 254 42 HOH HOH . 
H 5 HOH A 55 255 59 HOH HOH . 
H 5 HOH A 56 256 72 HOH HOH . 
H 5 HOH A 57 257 75 HOH HOH . 
H 5 HOH A 58 258 79 HOH HOH . 
H 5 HOH A 59 259 89 HOH HOH . 
H 5 HOH A 60 260 109 HOH HOH . 
H 5 HOH A 61 261 112 HOH HOH . 
H 5 HOH A 62 262 116 HOH HOH . 
H 5 HOH A 63 263 122 HOH HOH . 
H 5 HOH A 64 264 127 HOH HOH . 
H 5 HOH A 65 265 135 HOH HOH . 
H 5 HOH A 66 266 137 HOH HOH . 
H 5 HOH A 67 267 143 HOH HOH . 
H 5 HOH A 68 268 147 HOH HOH . 
H 5 HOH A 69 269 166 HOH HOH . 
I 5 HOH B 1 201 146 HOH HOH . 
I 5 HOH B 2 202 77 HOH HOH . 
I 5 HOH B 3 203 157 HOH HOH . 
I 5 HOH B 4 204 125 HOH HOH . 
I 5 HOH B 5 205 54 HOH HOH . 
I 5 HOH B 6 206 82 HOH HOH . 
I 5 HOH B 7 207 86 HOH HOH . 
I 5 HOH B 8 208 93 HOH HOH . 
I 5 HOH B 9 209 130 HOH HOH . 
I 5 HOH B 10 210 60 HOH HOH . 
I 5 HOH B 11 211 29 HOH HOH . 
I 5 HOH B 12 212 33 HOH HOH . 
I 5 HOH B 13 213 83 HOH HOH . 
I 5 HOH B 14 214 19 HOH HOH . 
I 5 HOH B 15 215 23 HOH HOH . 
I 5 HOH B 16 216 32 HOH HOH . 
I 5 HOH B 17 217 117 HOH HOH . 
I 5 HOH B 18 218 134 HOH HOH . 
I 5 HOH B 19 219 22 HOH HOH . 
I 5 HOH B 20 220 50 HOH HOH . 
I 5 HOH B 21 221 58 HOH HOH . 
I 5 HOH B 22 222 21 HOH HOH . 
I 5 HOH B 23 223 49 HOH HOH . 
I 5 HOH B 24 224 68 HOH HOH . 
I 5 HOH B 25 225 91 HOH HOH . 
I 5 HOH B 26 226 76 HOH HOH . 
I 5 HOH B 27 227 44 HOH HOH . 
I 5 HOH B 28 228 81 HOH HOH . 
I 5 HOH B 29 229 73 HOH HOH . 
I 5 HOH B 30 230 57 HOH HOH . 
I 5 HOH B 31 231 47 HOH HOH . 
I 5 HOH B 32 232 121 HOH HOH . 
I 5 HOH B 33 233 55 HOH HOH . 
I 5 HOH B 34 234 9 HOH HOH . 
I 5 HOH B 35 235 108 HOH HOH . 
I 5 HOH B 36 236 24 HOH HOH . 
I 5 HOH B 37 237 46 HOH HOH . 
I 5 HOH B 38 238 152 HOH HOH . 
I 5 HOH B 39 239 63 HOH HOH . 
I 5 HOH B 40 240 132 HOH HOH . 
I 5 HOH B 41 241 103 HOH HOH . 
I 5 HOH B 42 242 66 HOH HOH . 
I 5 HOH B 43 243 120 HOH HOH . 
I 5 HOH B 44 244 111 HOH HOH . 
I 5 HOH B 45 245 153 HOH HOH . 
I 5 HOH B 46 246 67 HOH HOH . 
I 5 HOH B 47 247 94 HOH HOH . 
I 5 HOH B 48 248 87 HOH HOH . 
I 5 HOH B 49 249 133 HOH HOH . 
I 5 HOH B 50 250 123 HOH HOH . 
I 5 HOH B 51 251 84 HOH HOH . 
I 5 HOH B 52 252 150 HOH HOH . 
I 5 HOH B 53 253 1 HOH HOH . 
I 5 HOH B 54 254 2 HOH HOH . 
I 5 HOH B 55 255 7 HOH HOH . 
I 5 HOH B 56 256 10 HOH HOH . 
I 5 HOH B 57 257 12 HOH HOH . 
I 5 HOH B 58 258 39 HOH HOH . 
I 5 HOH B 59 259 40 HOH HOH . 
I 5 HOH B 60 260 41 HOH HOH . 
I 5 HOH B 61 261 45 HOH HOH . 
I 5 HOH B 62 262 61 HOH HOH . 
I 5 HOH B 63 263 64 HOH HOH . 
I 5 HOH B 64 264 70 HOH HOH . 
I 5 HOH B 65 265 90 HOH HOH . 
I 5 HOH B 66 266 95 HOH HOH . 
I 5 HOH B 67 267 101 HOH HOH . 
I 5 HOH B 68 268 104 HOH HOH . 
I 5 HOH B 69 269 105 HOH HOH . 
I 5 HOH B 70 270 106 HOH HOH . 
I 5 HOH B 71 271 113 HOH HOH . 
I 5 HOH B 72 272 115 HOH HOH . 
I 5 HOH B 73 273 131 HOH HOH . 
I 5 HOH B 74 274 138 HOH HOH . 
I 5 HOH B 75 275 145 HOH HOH . 
I 5 HOH B 76 276 151 HOH HOH . 
I 5 HOH B 77 277 167 HOH HOH . 
I 5 HOH B 78 278 168 HOH HOH . 
I 5 HOH B 79 279 169 HOH HOH . 
J 5 HOH C 1 101 51 HOH HOH . 
J 5 HOH C 2 102 154 HOH HOH . 
J 5 HOH C 3 103 140 HOH HOH . 
J 5 HOH C 4 104 80 HOH HOH . 
J 5 HOH C 5 105 96 HOH HOH . 
J 5 HOH C 6 106 98 HOH HOH . 
J 5 HOH C 7 107 118 HOH HOH . 
J 5 HOH C 8 108 126 HOH HOH . 
K 5 HOH D 1 101 144 HOH HOH . 
K 5 HOH D 2 102 48 HOH HOH . 
K 5 HOH D 3 103 43 HOH HOH . 
K 5 HOH D 4 104 124 HOH HOH . 
K 5 HOH D 5 105 165 HOH HOH . 
K 5 HOH D 6 106 102 HOH HOH . 
K 5 HOH D 7 107 162 HOH HOH . 
K 5 HOH D 8 108 160 HOH HOH . 
K 5 HOH D 9 109 11 HOH HOH . 
K 5 HOH D 10 110 114 HOH HOH . 
K 5 HOH D 11 111 155 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               5.239 
_atom_site.Cartn_y               -8.573 
_atom_site.Cartn_z               6.275 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        10.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#