data_4X3Q # _model_server_result.job_id Migx4dFhH06D-dm8cuXWgQ _model_server_result.datetime_utc '2024-10-19 21:37:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4X3Q # _exptl.entry_id 4X3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X3Q _cell.length_a 91.787 _cell.length_b 112.113 _cell.length_c 143.708 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 150 A GLY 150 1_555 A N MSE 151 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 151 A MSE 151 1_555 A N HIS 152 A HIS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLY 150 B GLY 150 1_555 B N MSE 151 B MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C MSE 151 B MSE 151 1_555 B N HIS 152 B HIS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C GLY 150 C GLY 150 1_555 C N MSE 151 C MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C MSE 151 C MSE 151 1_555 C N HIS 152 C HIS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 D C GLY 150 D GLY 150 1_555 D N MSE 151 D MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 D C MSE 151 D MSE 151 1_555 D N HIS 152 D HIS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X3Q _atom_sites.fract_transf_matrix[1][1] 0.010895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 401 401 SAH SAH . F 2 SAH B 1 401 401 SAH SAH . G 2 SAH C 1 401 401 SAH SAH . H 2 SAH D 1 401 401 SAH SAH . I 3 HOH A 1 501 27 HOH HOH . I 3 HOH A 2 502 3 HOH HOH . I 3 HOH A 3 503 9 HOH HOH . I 3 HOH A 4 504 12 HOH HOH . I 3 HOH A 5 505 13 HOH HOH . I 3 HOH A 6 506 14 HOH HOH . I 3 HOH A 7 507 15 HOH HOH . I 3 HOH A 8 508 16 HOH HOH . I 3 HOH A 9 509 21 HOH HOH . I 3 HOH A 10 510 23 HOH HOH . I 3 HOH A 11 511 24 HOH HOH . I 3 HOH A 12 512 25 HOH HOH . I 3 HOH A 13 513 28 HOH HOH . I 3 HOH A 14 514 30 HOH HOH . I 3 HOH A 15 515 31 HOH HOH . I 3 HOH A 16 516 32 HOH HOH . I 3 HOH A 17 517 36 HOH HOH . I 3 HOH A 18 518 38 HOH HOH . I 3 HOH A 19 519 41 HOH HOH . I 3 HOH A 20 520 43 HOH HOH . I 3 HOH A 21 521 44 HOH HOH . I 3 HOH A 22 522 47 HOH HOH . I 3 HOH A 23 523 51 HOH HOH . I 3 HOH A 24 524 55 HOH HOH . I 3 HOH A 25 525 60 HOH HOH . I 3 HOH A 26 526 62 HOH HOH . I 3 HOH A 27 527 64 HOH HOH . I 3 HOH A 28 528 71 HOH HOH . I 3 HOH A 29 529 76 HOH HOH . I 3 HOH A 30 530 80 HOH HOH . I 3 HOH A 31 531 81 HOH HOH . I 3 HOH A 32 532 91 HOH HOH . I 3 HOH A 33 533 97 HOH HOH . I 3 HOH A 34 534 103 HOH HOH . I 3 HOH A 35 535 104 HOH HOH . I 3 HOH A 36 536 108 HOH HOH . I 3 HOH A 37 537 110 HOH HOH . I 3 HOH A 38 538 112 HOH HOH . I 3 HOH A 39 539 118 HOH HOH . I 3 HOH A 40 540 121 HOH HOH . I 3 HOH A 41 541 122 HOH HOH . J 3 HOH B 1 501 100 HOH HOH . J 3 HOH B 2 502 4 HOH HOH . J 3 HOH B 3 503 7 HOH HOH . J 3 HOH B 4 504 8 HOH HOH . J 3 HOH B 5 505 17 HOH HOH . J 3 HOH B 6 506 18 HOH HOH . J 3 HOH B 7 507 22 HOH HOH . J 3 HOH B 8 508 33 HOH HOH . J 3 HOH B 9 509 34 HOH HOH . J 3 HOH B 10 510 46 HOH HOH . J 3 HOH B 11 511 52 HOH HOH . J 3 HOH B 12 512 59 HOH HOH . J 3 HOH B 13 513 65 HOH HOH . J 3 HOH B 14 514 66 HOH HOH . J 3 HOH B 15 515 68 HOH HOH . J 3 HOH B 16 516 69 HOH HOH . J 3 HOH B 17 517 70 HOH HOH . J 3 HOH B 18 518 75 HOH HOH . J 3 HOH B 19 519 84 HOH HOH . J 3 HOH B 20 520 85 HOH HOH . J 3 HOH B 21 521 87 HOH HOH . J 3 HOH B 22 522 95 HOH HOH . J 3 HOH B 23 523 98 HOH HOH . J 3 HOH B 24 524 101 HOH HOH . J 3 HOH B 25 525 107 HOH HOH . J 3 HOH B 26 526 113 HOH HOH . J 3 HOH B 27 527 117 HOH HOH . J 3 HOH B 28 528 119 HOH HOH . J 3 HOH B 29 529 120 HOH HOH . K 3 HOH C 1 501 83 HOH HOH . K 3 HOH C 2 502 1 HOH HOH . K 3 HOH C 3 503 5 HOH HOH . K 3 HOH C 4 504 11 HOH HOH . K 3 HOH C 5 505 26 HOH HOH . K 3 HOH C 6 506 29 HOH HOH . K 3 HOH C 7 507 35 HOH HOH . K 3 HOH C 8 508 40 HOH HOH . K 3 HOH C 9 509 42 HOH HOH . K 3 HOH C 10 510 53 HOH HOH . K 3 HOH C 11 511 56 HOH HOH . K 3 HOH C 12 512 58 HOH HOH . K 3 HOH C 13 513 61 HOH HOH . K 3 HOH C 14 514 67 HOH HOH . K 3 HOH C 15 515 74 HOH HOH . K 3 HOH C 16 516 79 HOH HOH . K 3 HOH C 17 517 86 HOH HOH . K 3 HOH C 18 518 90 HOH HOH . K 3 HOH C 19 519 94 HOH HOH . K 3 HOH C 20 520 96 HOH HOH . K 3 HOH C 21 521 99 HOH HOH . K 3 HOH C 22 522 102 HOH HOH . K 3 HOH C 23 523 105 HOH HOH . K 3 HOH C 24 524 106 HOH HOH . K 3 HOH C 25 525 109 HOH HOH . K 3 HOH C 26 526 111 HOH HOH . K 3 HOH C 27 527 115 HOH HOH . K 3 HOH C 28 528 116 HOH HOH . L 3 HOH D 1 501 49 HOH HOH . L 3 HOH D 2 502 2 HOH HOH . L 3 HOH D 3 503 6 HOH HOH . L 3 HOH D 4 504 10 HOH HOH . L 3 HOH D 5 505 19 HOH HOH . L 3 HOH D 6 506 20 HOH HOH . L 3 HOH D 7 507 37 HOH HOH . L 3 HOH D 8 508 39 HOH HOH . L 3 HOH D 9 509 45 HOH HOH . L 3 HOH D 10 510 48 HOH HOH . L 3 HOH D 11 511 50 HOH HOH . L 3 HOH D 12 512 54 HOH HOH . L 3 HOH D 13 513 57 HOH HOH . L 3 HOH D 14 514 63 HOH HOH . L 3 HOH D 15 515 72 HOH HOH . L 3 HOH D 16 516 73 HOH HOH . L 3 HOH D 17 517 77 HOH HOH . L 3 HOH D 18 518 78 HOH HOH . L 3 HOH D 19 519 82 HOH HOH . L 3 HOH D 20 520 88 HOH HOH . L 3 HOH D 21 521 89 HOH HOH . L 3 HOH D 22 522 92 HOH HOH . L 3 HOH D 23 523 93 HOH HOH . L 3 HOH D 24 524 114 HOH HOH . L 3 HOH D 25 525 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 -3.151 5.799 0.077 1 37.13 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . E 2 -2.01 4.978 -0.138 1 42.74 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . E 2 -0.852 5.338 0.781 1 42.37 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . E 2 -1.152 5.225 2.27 1 47.51 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . E 2 0.332 5.448 3.243 1 49.22 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . E 2 -2.426 3.546 0.095 1 45.04 ? C SAH 401 A 1 HETATM 7 O O SAH . . . E 2 -1.69 2.587 -0.274 1 46.58 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . E 2 -3.525 3.326 0.665 1 47.18 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . E 2 0.226 7.112 3.905 1 38.57 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . E 2 0.415 8.174 2.812 1 38.78 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . E 2 0.106 9.498 3.329 1 45.1 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . E 2 1.908 8.251 2.34 1 36.9 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . E 2 1.98 8.181 0.93 1 44.86 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . E 2 2.379 9.623 2.788 1 40.2 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . E 2 3.363 10.172 1.865 1 35.99 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . E 2 1.066 10.398 2.777 1 43.39 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . E 2 1.218 11.561 3.544 1 39.09 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . E 2 1.407 11.628 4.862 1 40.71 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . E 2 1.525 12.894 5.3 1 43.43 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . E 2 1.405 13.657 4.174 1 42.25 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . E 2 1.439 15.045 3.959 1 41.25 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . E 2 1.636 15.923 4.968 1 33.41 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . E 2 1.264 15.488 2.709 1 41.18 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . E 2 1.107 14.608 1.705 1 41.29 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . E 2 1.061 13.277 1.787 1 43.62 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . E 2 1.217 12.842 3.074 1 41.25 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #