data_4X41 # _model_server_result.job_id Djq5qHDDBjnNLFd4Lz3xEA _model_server_result.datetime_utc '2024-10-19 22:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4X41 # _exptl.entry_id 4X41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X41 _cell.length_a 68.159 _cell.length_b 78.236 _cell.length_c 203.861 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -203.861 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 4X41 _atom_sites.fract_transf_matrix[1][1] 0.014672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -7.566 -29.535 -35.406 1 56.15 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . C 2 -8.705 -29.408 -36.336 1 61.25 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . C 2 -9.224 -30.796 -36.696 1 58.52 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . C 2 -10.118 -30.736 -37.929 1 59.45 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . C 2 -9.69 -31.976 -39.023 1 51.1 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . C 2 -9.791 -28.602 -35.685 1 57.29 ? C SAH 401 A 1 HETATM 7 O O SAH . . . C 2 -9.843 -27.375 -35.918 1 49.24 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . C 2 -10.595 -29.185 -34.927 1 58.74 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . C 2 -10.653 -33.361 -38.761 1 59.3 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . C 2 -9.746 -34.56 -38.508 1 65.32 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . C 2 -10.49 -35.779 -38.445 1 68.3 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . C 2 -8.702 -34.755 -39.599 1 75.79 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . C 2 -7.412 -34.412 -39.088 1 76.46 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . C 2 -8.743 -36.233 -39.934 1 70.65 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . C 2 -7.433 -36.8 -39.869 1 69.3 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . C 2 -9.626 -36.837 -38.857 1 63.97 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . C 2 -10.385 -38 -39.379 1 61.26 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . C 2 -10.883 -38.147 -40.621 1 64.71 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . C 2 -11.522 -39.339 -40.752 1 67.76 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . C 2 -11.432 -39.975 -39.569 1 61.03 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . C 2 -11.885 -41.269 -39.011 1 57.68 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . C 2 -12.583 -42.157 -39.759 1 48.92 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . C 2 -11.577 -41.53 -37.723 1 60.87 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . C 2 -10.883 -40.671 -36.957 1 55.6 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . C 2 -10.442 -39.483 -37.398 1 56.19 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . C 2 -10.682 -39.087 -38.67 1 59.13 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #