data_4X47 # _model_server_result.job_id U-F62CTqc2ak69clg2h2Ug _model_server_result.datetime_utc '2024-11-29 21:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4X47 # _exptl.entry_id 4X47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.255 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4X47 _cell.length_a 101.305 _cell.length_b 101.305 _cell.length_c 131.939 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N O8' _chem_comp.formula_weight 291.255 _chem_comp.id DAN _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms Neu5Ac2en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DAN sing 83 n n C1 O1A DAN doub 84 n n C1 O1B DAN sing 85 n n C2 C3 DAN doub 86 n n C2 O6 DAN sing 87 n n C3 C4 DAN sing 88 n n C3 H3 DAN sing 89 n n C4 C5 DAN sing 90 n n C4 O4 DAN sing 91 n n C4 H4 DAN sing 92 n n C5 C6 DAN sing 93 n n C5 N5 DAN sing 94 n n C5 H5 DAN sing 95 n n C6 C7 DAN sing 96 n n C6 O6 DAN sing 97 n n C6 H6 DAN sing 98 n n C7 C8 DAN sing 99 n n C7 O7 DAN sing 100 n n C7 H7 DAN sing 101 n n C8 C9 DAN sing 102 n n C8 O8 DAN sing 103 n n C8 H8 DAN sing 104 n n C9 O9 DAN sing 105 n n C9 H91 DAN sing 106 n n C9 H92 DAN sing 107 n n C10 C11 DAN sing 108 n n C10 N5 DAN sing 109 n n C10 O10 DAN doub 110 n n C11 H111 DAN sing 111 n n C11 H112 DAN sing 112 n n C11 H113 DAN sing 113 n n N5 HN5 DAN sing 114 n n O1B HO1B DAN sing 115 n n O4 HO4 DAN sing 116 n n O7 HO7 DAN sing 117 n n O8 HO8 DAN sing 118 n n O9 HO9 DAN sing 119 n n # _atom_sites.entry_id 4X47 _atom_sites.fract_transf_matrix[1][1] 0.009871 _atom_sites.fract_transf_matrix[1][2] 0.005699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAN A 1 801 1 DAN DAN . C 3 PO4 A 1 802 1 PO4 PO4 . D 4 HOH A 1 901 363 HOH HOH . D 4 HOH A 2 902 346 HOH HOH . D 4 HOH A 3 903 365 HOH HOH . D 4 HOH A 4 904 266 HOH HOH . D 4 HOH A 5 905 69 HOH HOH . D 4 HOH A 6 906 356 HOH HOH . D 4 HOH A 7 907 352 HOH HOH . D 4 HOH A 8 908 54 HOH HOH . D 4 HOH A 9 909 354 HOH HOH . D 4 HOH A 10 910 6 HOH HOH . D 4 HOH A 11 911 339 HOH HOH . D 4 HOH A 12 912 9 HOH HOH . D 4 HOH A 13 913 23 HOH HOH . D 4 HOH A 14 914 75 HOH HOH . D 4 HOH A 15 915 359 HOH HOH . D 4 HOH A 16 916 329 HOH HOH . D 4 HOH A 17 917 21 HOH HOH . D 4 HOH A 18 918 83 HOH HOH . D 4 HOH A 19 919 344 HOH HOH . D 4 HOH A 20 920 343 HOH HOH . D 4 HOH A 21 921 86 HOH HOH . D 4 HOH A 22 922 334 HOH HOH . D 4 HOH A 23 923 119 HOH HOH . D 4 HOH A 24 924 25 HOH HOH . D 4 HOH A 25 925 91 HOH HOH . D 4 HOH A 26 926 338 HOH HOH . D 4 HOH A 27 927 361 HOH HOH . D 4 HOH A 28 928 35 HOH HOH . D 4 HOH A 29 929 80 HOH HOH . D 4 HOH A 30 930 2 HOH HOH . D 4 HOH A 31 931 28 HOH HOH . D 4 HOH A 32 932 349 HOH HOH . D 4 HOH A 33 933 129 HOH HOH . D 4 HOH A 34 934 128 HOH HOH . D 4 HOH A 35 935 196 HOH HOH . D 4 HOH A 36 936 66 HOH HOH . D 4 HOH A 37 937 213 HOH HOH . D 4 HOH A 38 938 52 HOH HOH . D 4 HOH A 39 939 109 HOH HOH . D 4 HOH A 40 940 279 HOH HOH . D 4 HOH A 41 941 74 HOH HOH . D 4 HOH A 42 942 47 HOH HOH . D 4 HOH A 43 943 370 HOH HOH . D 4 HOH A 44 944 313 HOH HOH . D 4 HOH A 45 945 124 HOH HOH . D 4 HOH A 46 946 152 HOH HOH . D 4 HOH A 47 947 341 HOH HOH . D 4 HOH A 48 948 162 HOH HOH . D 4 HOH A 49 949 253 HOH HOH . D 4 HOH A 50 950 368 HOH HOH . D 4 HOH A 51 951 87 HOH HOH . D 4 HOH A 52 952 348 HOH HOH . D 4 HOH A 53 953 64 HOH HOH . D 4 HOH A 54 954 81 HOH HOH . D 4 HOH A 55 955 143 HOH HOH . D 4 HOH A 56 956 46 HOH HOH . D 4 HOH A 57 957 3 HOH HOH . D 4 HOH A 58 958 90 HOH HOH . D 4 HOH A 59 959 42 HOH HOH . D 4 HOH A 60 960 61 HOH HOH . D 4 HOH A 61 961 189 HOH HOH . D 4 HOH A 62 962 20 HOH HOH . D 4 HOH A 63 963 48 HOH HOH . D 4 HOH A 64 964 227 HOH HOH . D 4 HOH A 65 965 366 HOH HOH . D 4 HOH A 66 966 44 HOH HOH . D 4 HOH A 67 967 372 HOH HOH . D 4 HOH A 68 968 234 HOH HOH . D 4 HOH A 69 969 100 HOH HOH . D 4 HOH A 70 970 97 HOH HOH . D 4 HOH A 71 971 122 HOH HOH . D 4 HOH A 72 972 347 HOH HOH . D 4 HOH A 73 973 342 HOH HOH . D 4 HOH A 74 974 115 HOH HOH . D 4 HOH A 75 975 5 HOH HOH . D 4 HOH A 76 976 362 HOH HOH . D 4 HOH A 77 977 70 HOH HOH . D 4 HOH A 78 978 147 HOH HOH . D 4 HOH A 79 979 58 HOH HOH . D 4 HOH A 80 980 335 HOH HOH . D 4 HOH A 81 981 117 HOH HOH . D 4 HOH A 82 982 30 HOH HOH . D 4 HOH A 83 983 333 HOH HOH . D 4 HOH A 84 984 364 HOH HOH . D 4 HOH A 85 985 14 HOH HOH . D 4 HOH A 86 986 95 HOH HOH . D 4 HOH A 87 987 350 HOH HOH . D 4 HOH A 88 988 251 HOH HOH . D 4 HOH A 89 989 171 HOH HOH . D 4 HOH A 90 990 51 HOH HOH . D 4 HOH A 91 991 93 HOH HOH . D 4 HOH A 92 992 340 HOH HOH . D 4 HOH A 93 993 181 HOH HOH . D 4 HOH A 94 994 29 HOH HOH . D 4 HOH A 95 995 107 HOH HOH . D 4 HOH A 96 996 154 HOH HOH . D 4 HOH A 97 997 62 HOH HOH . D 4 HOH A 98 998 123 HOH HOH . D 4 HOH A 99 999 26 HOH HOH . D 4 HOH A 100 1000 49 HOH HOH . D 4 HOH A 101 1001 345 HOH HOH . D 4 HOH A 102 1002 367 HOH HOH . D 4 HOH A 103 1003 112 HOH HOH . D 4 HOH A 104 1004 337 HOH HOH . D 4 HOH A 105 1005 360 HOH HOH . D 4 HOH A 106 1006 245 HOH HOH . D 4 HOH A 107 1007 8 HOH HOH . D 4 HOH A 108 1008 24 HOH HOH . D 4 HOH A 109 1009 63 HOH HOH . D 4 HOH A 110 1010 32 HOH HOH . D 4 HOH A 111 1011 255 HOH HOH . D 4 HOH A 112 1012 19 HOH HOH . D 4 HOH A 113 1013 150 HOH HOH . D 4 HOH A 114 1014 273 HOH HOH . D 4 HOH A 115 1015 290 HOH HOH . D 4 HOH A 116 1016 84 HOH HOH . D 4 HOH A 117 1017 15 HOH HOH . D 4 HOH A 118 1018 111 HOH HOH . D 4 HOH A 119 1019 88 HOH HOH . D 4 HOH A 120 1020 232 HOH HOH . D 4 HOH A 121 1021 4 HOH HOH . D 4 HOH A 122 1022 104 HOH HOH . D 4 HOH A 123 1023 193 HOH HOH . D 4 HOH A 124 1024 133 HOH HOH . D 4 HOH A 125 1025 183 HOH HOH . D 4 HOH A 126 1026 120 HOH HOH . D 4 HOH A 127 1027 105 HOH HOH . D 4 HOH A 128 1028 68 HOH HOH . D 4 HOH A 129 1029 10 HOH HOH . D 4 HOH A 130 1030 225 HOH HOH . D 4 HOH A 131 1031 1 HOH HOH . D 4 HOH A 132 1032 59 HOH HOH . D 4 HOH A 133 1033 98 HOH HOH . D 4 HOH A 134 1034 148 HOH HOH . D 4 HOH A 135 1035 248 HOH HOH . D 4 HOH A 136 1036 12 HOH HOH . D 4 HOH A 137 1037 249 HOH HOH . D 4 HOH A 138 1038 226 HOH HOH . D 4 HOH A 139 1039 139 HOH HOH . D 4 HOH A 140 1040 31 HOH HOH . D 4 HOH A 141 1041 134 HOH HOH . D 4 HOH A 142 1042 60 HOH HOH . D 4 HOH A 143 1043 38 HOH HOH . D 4 HOH A 144 1044 149 HOH HOH . D 4 HOH A 145 1045 284 HOH HOH . D 4 HOH A 146 1046 157 HOH HOH . D 4 HOH A 147 1047 177 HOH HOH . D 4 HOH A 148 1048 170 HOH HOH . D 4 HOH A 149 1049 77 HOH HOH . D 4 HOH A 150 1050 67 HOH HOH . D 4 HOH A 151 1051 353 HOH HOH . D 4 HOH A 152 1052 37 HOH HOH . D 4 HOH A 153 1053 257 HOH HOH . D 4 HOH A 154 1054 131 HOH HOH . D 4 HOH A 155 1055 145 HOH HOH . D 4 HOH A 156 1056 11 HOH HOH . D 4 HOH A 157 1057 172 HOH HOH . D 4 HOH A 158 1058 57 HOH HOH . D 4 HOH A 159 1059 65 HOH HOH . D 4 HOH A 160 1060 174 HOH HOH . D 4 HOH A 161 1061 136 HOH HOH . D 4 HOH A 162 1062 78 HOH HOH . D 4 HOH A 163 1063 317 HOH HOH . D 4 HOH A 164 1064 71 HOH HOH . D 4 HOH A 165 1065 56 HOH HOH . D 4 HOH A 166 1066 158 HOH HOH . D 4 HOH A 167 1067 165 HOH HOH . D 4 HOH A 168 1068 179 HOH HOH . D 4 HOH A 169 1069 141 HOH HOH . D 4 HOH A 170 1070 142 HOH HOH . D 4 HOH A 171 1071 206 HOH HOH . D 4 HOH A 172 1072 176 HOH HOH . D 4 HOH A 173 1073 336 HOH HOH . D 4 HOH A 174 1074 36 HOH HOH . D 4 HOH A 175 1075 203 HOH HOH . D 4 HOH A 176 1076 92 HOH HOH . D 4 HOH A 177 1077 355 HOH HOH . D 4 HOH A 178 1078 230 HOH HOH . D 4 HOH A 179 1079 40 HOH HOH . D 4 HOH A 180 1080 101 HOH HOH . D 4 HOH A 181 1081 39 HOH HOH . D 4 HOH A 182 1082 94 HOH HOH . D 4 HOH A 183 1083 173 HOH HOH . D 4 HOH A 184 1084 166 HOH HOH . D 4 HOH A 185 1085 72 HOH HOH . D 4 HOH A 186 1086 121 HOH HOH . D 4 HOH A 187 1087 316 HOH HOH . D 4 HOH A 188 1088 140 HOH HOH . D 4 HOH A 189 1089 45 HOH HOH . D 4 HOH A 190 1090 43 HOH HOH . D 4 HOH A 191 1091 369 HOH HOH . D 4 HOH A 192 1092 114 HOH HOH . D 4 HOH A 193 1093 17 HOH HOH . D 4 HOH A 194 1094 168 HOH HOH . D 4 HOH A 195 1095 269 HOH HOH . D 4 HOH A 196 1096 50 HOH HOH . D 4 HOH A 197 1097 247 HOH HOH . D 4 HOH A 198 1098 202 HOH HOH . D 4 HOH A 199 1099 82 HOH HOH . D 4 HOH A 200 1100 358 HOH HOH . D 4 HOH A 201 1101 103 HOH HOH . D 4 HOH A 202 1102 326 HOH HOH . D 4 HOH A 203 1103 184 HOH HOH . D 4 HOH A 204 1104 73 HOH HOH . D 4 HOH A 205 1105 262 HOH HOH . D 4 HOH A 206 1106 27 HOH HOH . D 4 HOH A 207 1107 265 HOH HOH . D 4 HOH A 208 1108 315 HOH HOH . D 4 HOH A 209 1109 332 HOH HOH . D 4 HOH A 210 1110 304 HOH HOH . D 4 HOH A 211 1111 55 HOH HOH . D 4 HOH A 212 1112 76 HOH HOH . D 4 HOH A 213 1113 330 HOH HOH . D 4 HOH A 214 1114 209 HOH HOH . D 4 HOH A 215 1115 322 HOH HOH . D 4 HOH A 216 1116 371 HOH HOH . D 4 HOH A 217 1117 318 HOH HOH . D 4 HOH A 218 1118 321 HOH HOH . D 4 HOH A 219 1119 186 HOH HOH . D 4 HOH A 220 1120 41 HOH HOH . D 4 HOH A 221 1121 188 HOH HOH . D 4 HOH A 222 1122 276 HOH HOH . D 4 HOH A 223 1123 320 HOH HOH . D 4 HOH A 224 1124 13 HOH HOH . D 4 HOH A 225 1125 331 HOH HOH . D 4 HOH A 226 1126 159 HOH HOH . D 4 HOH A 227 1127 175 HOH HOH . D 4 HOH A 228 1128 328 HOH HOH . D 4 HOH A 229 1129 146 HOH HOH . D 4 HOH A 230 1130 357 HOH HOH . D 4 HOH A 231 1131 187 HOH HOH . D 4 HOH A 232 1132 161 HOH HOH . D 4 HOH A 233 1133 135 HOH HOH . D 4 HOH A 234 1134 233 HOH HOH . D 4 HOH A 235 1135 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DAN . . . B 2 -9.215 41.328 -18.211 1 33.25 ? C1 DAN 801 A 1 HETATM 2 C C2 DAN . . . B 2 -9.794 41.352 -16.862 1 30.86 ? C2 DAN 801 A 1 HETATM 3 C C3 DAN . . . B 2 -10.877 40.658 -16.514 1 27.44 ? C3 DAN 801 A 1 HETATM 4 C C4 DAN . . . B 2 -11.422 40.757 -15.131 1 29.5 ? C4 DAN 801 A 1 HETATM 5 C C5 DAN . . . B 2 -11.024 42.064 -14.467 1 30.88 ? C5 DAN 801 A 1 HETATM 6 C C6 DAN . . . B 2 -9.517 42.358 -14.591 1 30.78 ? C6 DAN 801 A 1 HETATM 7 C C7 DAN . . . B 2 -9.266 43.838 -14.196 1 35.04 ? C7 DAN 801 A 1 HETATM 8 C C8 DAN . . . B 2 -7.997 44.61 -14.44 1 40.62 ? C8 DAN 801 A 1 HETATM 9 C C9 DAN . . . B 2 -7.123 44.799 -13.18 1 48.37 ? C9 DAN 801 A 1 HETATM 10 C C10 DAN . . . B 2 -12.016 43.037 -12.451 1 32.26 ? C10 DAN 801 A 1 HETATM 11 C C11 DAN . . . B 2 -12.31 42.815 -11.008 1 32.11 ? C11 DAN 801 A 1 HETATM 12 N N5 DAN . . . B 2 -11.42 42.038 -13.067 1 32.91 ? N5 DAN 801 A 1 HETATM 13 O O1A DAN . . . B 2 -9.905 40.869 -19.206 1 29.58 ? O1A DAN 801 A 1 HETATM 14 O O1B DAN . . . B 2 -8.024 41.764 -18.266 1 30.8 ? O1B DAN 801 A 1 HETATM 15 O O4 DAN . . . B 2 -12.844 40.611 -15.155 1 27.53 ? O4 DAN 801 A 1 HETATM 16 O O6 DAN . . . B 2 -9.154 42.245 -15.949 1 32.17 ? O6 DAN 801 A 1 HETATM 17 O O7 DAN . . . B 2 -10.079 44.596 -15.087 1 37.11 ? O7 DAN 801 A 1 HETATM 18 O O8 DAN . . . B 2 -7.339 44.044 -15.613 1 49.96 ? O8 DAN 801 A 1 HETATM 19 O O9 DAN . . . B 2 -7.565 45.781 -12.181 1 47.79 ? O9 DAN 801 A 1 HETATM 20 O O10 DAN . . . B 2 -12.279 44.066 -13.02 1 35.48 ? O10 DAN 801 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #