data_4X4K # _model_server_result.job_id bWcyvt5zkerp0dEh1LyeeQ _model_server_result.datetime_utc '2024-11-30 04:10:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4X4K # _exptl.entry_id 4X4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109 _cell.angle_gamma 90 _cell.entry_id 4X4K _cell.length_a 69.4 _cell.length_b 113.1 _cell.length_c 79.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 3 5 4 MAN MAN C1 O1 . O6 HO6 . sing 7 ? 3 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 608 NAG 2 n B NAG 2 B 2 NAG A 609 NAG 2 n B BMA 3 B 3 BMA A 610 BMA 3 n C NAG 1 C 1 NAG A 611 NAG 3 n C NAG 2 C 2 NAG A 612 NAG 3 n C BMA 3 C 3 BMA A 613 BMA 3 n C MAN 4 C 4 MAN A 614 MAN 3 n C MAN 5 C 5 MAN A 615 MAN 3 n C MAN 6 C 6 MAN A 616 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 145 A CYS 108 1_555 A SG CYS 561 A CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 238 A CYS 201 1_555 A SG CYS 246 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 334 A CYS 297 1_555 A SG CYS 368 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 76 A ASN 39 1_555 J C1 NAG . A NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 92 A ASN 55 1_555 I C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 A ND2 ASN 119 A ASN 82 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 231 A ASN 194 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 A ND2 ASN 342 A ASN 305 1_555 M C1 NAG . A NAG 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 A OG SER 375 A SER 338 1_555 N C1 MAN . A MAN 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 A ND2 ASN 407 A ASN 370 1_555 K C1 NAG . A NAG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 A ND2 ASN 426 A ASN 389 1_555 L C1 NAG . A NAG 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale9 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 C O6 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale15 C O2 MAN . C MAN 5 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A NE2 HIS 118 A HIS 81 1_555 H CU CU . A CU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A NE2 HIS 124 A HIS 87 1_555 G CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 A ND1 HIS 126 A HIS 89 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc4 A NE2 HIS 168 A HIS 131 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 A NE2 HIS 170 A HIS 133 1_555 E CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 A ND1 HIS 463 A HIS 426 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc7 A NE2 HIS 466 A HIS 429 1_555 G CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc8 A NE2 HIS 468 A HIS 431 1_555 E CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc9 A NE2 HIS 525 A HIS 488 1_555 E CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc10 A SG CYS 526 A CYS 489 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc11 A NE2 HIS 527 A HIS 490 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 A ND1 HIS 531 A HIS 494 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 E CU CU . A CU 602 1_555 P O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc14 G CU CU . A CU 604 1_555 P O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X4K _atom_sites.fract_transf_matrix[1][1] 0.014409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004961 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 601 CU CU . E 4 CU A 1 602 602 CU CU . F 4 CU A 1 603 603 CU CU . G 4 CU A 1 604 604 CU CU . H 4 CU A 1 605 605 CU CU . I 5 NAG A 1 606 606 NAG NAG . J 5 NAG A 1 607 607 NAG NAG . K 5 NAG A 1 617 617 NAG NAG . L 5 NAG A 1 618 618 NAG NAG . M 5 NAG A 1 619 619 NAG NAG . N 6 MAN A 1 620 620 MAN MAN . O 7 SO4 A 1 621 621 SO4 SO4 . P 8 HOH A 1 701 701 HOH HOH . P 8 HOH A 2 702 749 HOH HOH . P 8 HOH A 3 703 731 HOH HOH . P 8 HOH A 4 704 826 HOH HOH . P 8 HOH A 5 705 742 HOH HOH . P 8 HOH A 6 706 735 HOH HOH . P 8 HOH A 7 707 816 HOH HOH . P 8 HOH A 8 708 815 HOH HOH . P 8 HOH A 9 709 702 HOH HOH . P 8 HOH A 10 710 808 HOH HOH . P 8 HOH A 11 711 726 HOH HOH . P 8 HOH A 12 712 783 HOH HOH . P 8 HOH A 13 713 846 HOH HOH . P 8 HOH A 14 714 836 HOH HOH . P 8 HOH A 15 715 782 HOH HOH . P 8 HOH A 16 716 704 HOH HOH . P 8 HOH A 17 717 855 HOH HOH . P 8 HOH A 18 718 703 HOH HOH . P 8 HOH A 19 719 818 HOH HOH . P 8 HOH A 20 720 705 HOH HOH . P 8 HOH A 21 721 769 HOH HOH . P 8 HOH A 22 722 795 HOH HOH . P 8 HOH A 23 723 852 HOH HOH . P 8 HOH A 24 724 752 HOH HOH . P 8 HOH A 25 725 788 HOH HOH . P 8 HOH A 26 726 779 HOH HOH . P 8 HOH A 27 727 764 HOH HOH . P 8 HOH A 28 728 843 HOH HOH . P 8 HOH A 29 729 728 HOH HOH . P 8 HOH A 30 730 750 HOH HOH . P 8 HOH A 31 731 760 HOH HOH . P 8 HOH A 32 732 794 HOH HOH . P 8 HOH A 33 733 766 HOH HOH . P 8 HOH A 34 734 759 HOH HOH . P 8 HOH A 35 735 722 HOH HOH . P 8 HOH A 36 736 757 HOH HOH . P 8 HOH A 37 737 706 HOH HOH . P 8 HOH A 38 738 707 HOH HOH . P 8 HOH A 39 739 724 HOH HOH . P 8 HOH A 40 740 708 HOH HOH . P 8 HOH A 41 741 768 HOH HOH . P 8 HOH A 42 742 734 HOH HOH . P 8 HOH A 43 743 739 HOH HOH . P 8 HOH A 44 744 825 HOH HOH . P 8 HOH A 45 745 775 HOH HOH . P 8 HOH A 46 746 772 HOH HOH . P 8 HOH A 47 747 798 HOH HOH . P 8 HOH A 48 748 747 HOH HOH . P 8 HOH A 49 749 745 HOH HOH . P 8 HOH A 50 750 746 HOH HOH . P 8 HOH A 51 751 743 HOH HOH . P 8 HOH A 52 752 778 HOH HOH . P 8 HOH A 53 753 755 HOH HOH . P 8 HOH A 54 754 738 HOH HOH . P 8 HOH A 55 755 709 HOH HOH . P 8 HOH A 56 756 765 HOH HOH . P 8 HOH A 57 757 792 HOH HOH . P 8 HOH A 58 758 805 HOH HOH . P 8 HOH A 59 759 732 HOH HOH . P 8 HOH A 60 760 790 HOH HOH . P 8 HOH A 61 761 848 HOH HOH . P 8 HOH A 62 762 710 HOH HOH . P 8 HOH A 63 763 806 HOH HOH . P 8 HOH A 64 764 758 HOH HOH . P 8 HOH A 65 765 767 HOH HOH . P 8 HOH A 66 766 770 HOH HOH . P 8 HOH A 67 767 835 HOH HOH . P 8 HOH A 68 768 839 HOH HOH . P 8 HOH A 69 769 812 HOH HOH . P 8 HOH A 70 770 827 HOH HOH . P 8 HOH A 71 771 712 HOH HOH . P 8 HOH A 72 772 729 HOH HOH . P 8 HOH A 73 773 819 HOH HOH . P 8 HOH A 74 774 817 HOH HOH . P 8 HOH A 75 775 727 HOH HOH . P 8 HOH A 76 776 730 HOH HOH . P 8 HOH A 77 777 711 HOH HOH . P 8 HOH A 78 778 824 HOH HOH . P 8 HOH A 79 779 713 HOH HOH . P 8 HOH A 80 780 741 HOH HOH . P 8 HOH A 81 781 762 HOH HOH . P 8 HOH A 82 782 785 HOH HOH . P 8 HOH A 83 783 714 HOH HOH . P 8 HOH A 84 784 715 HOH HOH . P 8 HOH A 85 785 793 HOH HOH . P 8 HOH A 86 786 751 HOH HOH . P 8 HOH A 87 787 781 HOH HOH . P 8 HOH A 88 788 744 HOH HOH . P 8 HOH A 89 789 733 HOH HOH . P 8 HOH A 90 790 850 HOH HOH . P 8 HOH A 91 791 723 HOH HOH . P 8 HOH A 92 792 834 HOH HOH . P 8 HOH A 93 793 833 HOH HOH . P 8 HOH A 94 794 838 HOH HOH . P 8 HOH A 95 795 853 HOH HOH . P 8 HOH A 96 796 771 HOH HOH . P 8 HOH A 97 797 763 HOH HOH . P 8 HOH A 98 798 784 HOH HOH . P 8 HOH A 99 799 797 HOH HOH . P 8 HOH A 100 800 776 HOH HOH . P 8 HOH A 101 801 791 HOH HOH . P 8 HOH A 102 802 807 HOH HOH . P 8 HOH A 103 803 828 HOH HOH . P 8 HOH A 104 804 821 HOH HOH . P 8 HOH A 105 805 773 HOH HOH . P 8 HOH A 106 806 851 HOH HOH . P 8 HOH A 107 807 787 HOH HOH . P 8 HOH A 108 808 717 HOH HOH . P 8 HOH A 109 809 753 HOH HOH . P 8 HOH A 110 810 814 HOH HOH . P 8 HOH A 111 811 740 HOH HOH . P 8 HOH A 112 812 823 HOH HOH . P 8 HOH A 113 813 716 HOH HOH . P 8 HOH A 114 814 809 HOH HOH . P 8 HOH A 115 815 799 HOH HOH . P 8 HOH A 116 816 725 HOH HOH . P 8 HOH A 117 817 804 HOH HOH . P 8 HOH A 118 818 718 HOH HOH . P 8 HOH A 119 819 756 HOH HOH . P 8 HOH A 120 820 832 HOH HOH . P 8 HOH A 121 821 737 HOH HOH . P 8 HOH A 122 822 780 HOH HOH . P 8 HOH A 123 823 829 HOH HOH . P 8 HOH A 124 824 841 HOH HOH . P 8 HOH A 125 825 761 HOH HOH . P 8 HOH A 126 826 837 HOH HOH . P 8 HOH A 127 827 840 HOH HOH . P 8 HOH A 128 828 719 HOH HOH . P 8 HOH A 129 829 844 HOH HOH . P 8 HOH A 130 830 789 HOH HOH . P 8 HOH A 131 831 811 HOH HOH . P 8 HOH A 132 832 720 HOH HOH . P 8 HOH A 133 833 849 HOH HOH . P 8 HOH A 134 834 786 HOH HOH . P 8 HOH A 135 835 831 HOH HOH . P 8 HOH A 136 836 736 HOH HOH . P 8 HOH A 137 837 854 HOH HOH . P 8 HOH A 138 838 842 HOH HOH . P 8 HOH A 139 839 810 HOH HOH . P 8 HOH A 140 840 813 HOH HOH . P 8 HOH A 141 841 774 HOH HOH . P 8 HOH A 142 842 796 HOH HOH . P 8 HOH A 143 843 801 HOH HOH . P 8 HOH A 144 844 820 HOH HOH . P 8 HOH A 145 845 800 HOH HOH . P 8 HOH A 146 846 754 HOH HOH . P 8 HOH A 147 847 802 HOH HOH . P 8 HOH A 148 848 803 HOH HOH . P 8 HOH A 149 849 830 HOH HOH . P 8 HOH A 150 850 748 HOH HOH . P 8 HOH A 151 851 847 HOH HOH . P 8 HOH A 152 852 845 HOH HOH . P 8 HOH A 153 853 777 HOH HOH . P 8 HOH A 154 854 822 HOH HOH . P 8 HOH A 155 855 721 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -2.912 _atom_site.Cartn_y -4.92 _atom_site.Cartn_z -9.398 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #