data_4X54 # _model_server_result.job_id Kd3LhoXDRAsOS6YD7Hbfbg _model_server_result.datetime_utc '2025-01-03 03:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4X54 # _exptl.entry_id 4X54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X54 _cell.length_a 53.19 _cell.length_b 100.88 _cell.length_c 101.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 202.82 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 4X54 _atom_sites.fract_transf_matrix[1][1] 0.018801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 301 1 MPD MPD . C 2 MPD A 1 302 2 MPD MPD . D 3 HOH A 1 401 42 HOH HOH . D 3 HOH A 2 402 127 HOH HOH . D 3 HOH A 3 403 144 HOH HOH . D 3 HOH A 4 404 21 HOH HOH . D 3 HOH A 5 405 97 HOH HOH . D 3 HOH A 6 406 52 HOH HOH . D 3 HOH A 7 407 60 HOH HOH . D 3 HOH A 8 408 46 HOH HOH . D 3 HOH A 9 409 2 HOH HOH . D 3 HOH A 10 410 111 HOH HOH . D 3 HOH A 11 411 70 HOH HOH . D 3 HOH A 12 412 36 HOH HOH . D 3 HOH A 13 413 9 HOH HOH . D 3 HOH A 14 414 64 HOH HOH . D 3 HOH A 15 415 73 HOH HOH . D 3 HOH A 16 416 6 HOH HOH . D 3 HOH A 17 417 65 HOH HOH . D 3 HOH A 18 418 152 HOH HOH . D 3 HOH A 19 419 24 HOH HOH . D 3 HOH A 20 420 83 HOH HOH . D 3 HOH A 21 421 54 HOH HOH . D 3 HOH A 22 422 55 HOH HOH . D 3 HOH A 23 423 94 HOH HOH . D 3 HOH A 24 424 43 HOH HOH . D 3 HOH A 25 425 18 HOH HOH . D 3 HOH A 26 426 139 HOH HOH . D 3 HOH A 27 427 35 HOH HOH . D 3 HOH A 28 428 16 HOH HOH . D 3 HOH A 29 429 12 HOH HOH . D 3 HOH A 30 430 33 HOH HOH . D 3 HOH A 31 431 11 HOH HOH . D 3 HOH A 32 432 58 HOH HOH . D 3 HOH A 33 433 100 HOH HOH . D 3 HOH A 34 434 17 HOH HOH . D 3 HOH A 35 435 157 HOH HOH . D 3 HOH A 36 436 142 HOH HOH . D 3 HOH A 37 437 146 HOH HOH . D 3 HOH A 38 438 37 HOH HOH . D 3 HOH A 39 439 62 HOH HOH . D 3 HOH A 40 440 99 HOH HOH . D 3 HOH A 41 441 53 HOH HOH . D 3 HOH A 42 442 138 HOH HOH . D 3 HOH A 43 443 108 HOH HOH . D 3 HOH A 44 444 145 HOH HOH . D 3 HOH A 45 445 105 HOH HOH . D 3 HOH A 46 446 107 HOH HOH . D 3 HOH A 47 447 115 HOH HOH . D 3 HOH A 48 448 25 HOH HOH . D 3 HOH A 49 449 80 HOH HOH . D 3 HOH A 50 450 75 HOH HOH . D 3 HOH A 51 451 89 HOH HOH . D 3 HOH A 52 452 72 HOH HOH . D 3 HOH A 53 453 160 HOH HOH . D 3 HOH A 54 454 86 HOH HOH . D 3 HOH A 55 455 69 HOH HOH . D 3 HOH A 56 456 45 HOH HOH . D 3 HOH A 57 457 180 HOH HOH . D 3 HOH A 58 458 93 HOH HOH . D 3 HOH A 59 459 63 HOH HOH . D 3 HOH A 60 460 121 HOH HOH . D 3 HOH A 61 461 165 HOH HOH . D 3 HOH A 62 462 147 HOH HOH . D 3 HOH A 63 463 78 HOH HOH . D 3 HOH A 64 464 51 HOH HOH . D 3 HOH A 65 465 161 HOH HOH . D 3 HOH A 66 466 120 HOH HOH . D 3 HOH A 67 467 61 HOH HOH . D 3 HOH A 68 468 164 HOH HOH . D 3 HOH A 69 469 1 HOH HOH . D 3 HOH A 70 470 3 HOH HOH . D 3 HOH A 71 471 4 HOH HOH . D 3 HOH A 72 472 5 HOH HOH . D 3 HOH A 73 473 7 HOH HOH . D 3 HOH A 74 474 8 HOH HOH . D 3 HOH A 75 475 10 HOH HOH . D 3 HOH A 76 476 13 HOH HOH . D 3 HOH A 77 477 14 HOH HOH . D 3 HOH A 78 478 15 HOH HOH . D 3 HOH A 79 479 19 HOH HOH . D 3 HOH A 80 480 20 HOH HOH . D 3 HOH A 81 481 22 HOH HOH . D 3 HOH A 82 482 23 HOH HOH . D 3 HOH A 83 483 26 HOH HOH . D 3 HOH A 84 484 27 HOH HOH . D 3 HOH A 85 485 28 HOH HOH . D 3 HOH A 86 486 29 HOH HOH . D 3 HOH A 87 487 30 HOH HOH . D 3 HOH A 88 488 31 HOH HOH . D 3 HOH A 89 489 32 HOH HOH . D 3 HOH A 90 490 34 HOH HOH . D 3 HOH A 91 491 38 HOH HOH . D 3 HOH A 92 492 39 HOH HOH . D 3 HOH A 93 493 40 HOH HOH . D 3 HOH A 94 494 41 HOH HOH . D 3 HOH A 95 495 44 HOH HOH . D 3 HOH A 96 496 47 HOH HOH . D 3 HOH A 97 497 48 HOH HOH . D 3 HOH A 98 498 49 HOH HOH . D 3 HOH A 99 499 50 HOH HOH . D 3 HOH A 100 500 56 HOH HOH . D 3 HOH A 101 501 57 HOH HOH . D 3 HOH A 102 502 59 HOH HOH . D 3 HOH A 103 503 66 HOH HOH . D 3 HOH A 104 504 67 HOH HOH . D 3 HOH A 105 505 68 HOH HOH . D 3 HOH A 106 506 71 HOH HOH . D 3 HOH A 107 507 74 HOH HOH . D 3 HOH A 108 508 76 HOH HOH . D 3 HOH A 109 509 77 HOH HOH . D 3 HOH A 110 510 79 HOH HOH . D 3 HOH A 111 511 81 HOH HOH . D 3 HOH A 112 512 82 HOH HOH . D 3 HOH A 113 513 84 HOH HOH . D 3 HOH A 114 514 85 HOH HOH . D 3 HOH A 115 515 87 HOH HOH . D 3 HOH A 116 516 88 HOH HOH . D 3 HOH A 117 517 90 HOH HOH . D 3 HOH A 118 518 91 HOH HOH . D 3 HOH A 119 519 92 HOH HOH . D 3 HOH A 120 520 95 HOH HOH . D 3 HOH A 121 521 96 HOH HOH . D 3 HOH A 122 522 98 HOH HOH . D 3 HOH A 123 523 101 HOH HOH . D 3 HOH A 124 524 102 HOH HOH . D 3 HOH A 125 525 103 HOH HOH . D 3 HOH A 126 526 104 HOH HOH . D 3 HOH A 127 527 106 HOH HOH . D 3 HOH A 128 528 109 HOH HOH . D 3 HOH A 129 529 110 HOH HOH . D 3 HOH A 130 530 112 HOH HOH . D 3 HOH A 131 531 113 HOH HOH . D 3 HOH A 132 532 114 HOH HOH . D 3 HOH A 133 533 116 HOH HOH . D 3 HOH A 134 534 117 HOH HOH . D 3 HOH A 135 535 118 HOH HOH . D 3 HOH A 136 536 119 HOH HOH . D 3 HOH A 137 537 122 HOH HOH . D 3 HOH A 138 538 123 HOH HOH . D 3 HOH A 139 539 124 HOH HOH . D 3 HOH A 140 540 125 HOH HOH . D 3 HOH A 141 541 126 HOH HOH . D 3 HOH A 142 542 128 HOH HOH . D 3 HOH A 143 543 129 HOH HOH . D 3 HOH A 144 544 130 HOH HOH . D 3 HOH A 145 545 131 HOH HOH . D 3 HOH A 146 546 132 HOH HOH . D 3 HOH A 147 547 133 HOH HOH . D 3 HOH A 148 548 134 HOH HOH . D 3 HOH A 149 549 135 HOH HOH . D 3 HOH A 150 550 136 HOH HOH . D 3 HOH A 151 551 137 HOH HOH . D 3 HOH A 152 552 140 HOH HOH . D 3 HOH A 153 553 141 HOH HOH . D 3 HOH A 154 554 143 HOH HOH . D 3 HOH A 155 555 148 HOH HOH . D 3 HOH A 156 556 149 HOH HOH . D 3 HOH A 157 557 150 HOH HOH . D 3 HOH A 158 558 151 HOH HOH . D 3 HOH A 159 559 153 HOH HOH . D 3 HOH A 160 560 154 HOH HOH . D 3 HOH A 161 561 155 HOH HOH . D 3 HOH A 162 562 156 HOH HOH . D 3 HOH A 163 563 158 HOH HOH . D 3 HOH A 164 564 159 HOH HOH . D 3 HOH A 165 565 162 HOH HOH . D 3 HOH A 166 566 163 HOH HOH . D 3 HOH A 167 567 166 HOH HOH . D 3 HOH A 168 568 167 HOH HOH . D 3 HOH A 169 569 168 HOH HOH . D 3 HOH A 170 570 169 HOH HOH . D 3 HOH A 171 571 170 HOH HOH . D 3 HOH A 172 572 171 HOH HOH . D 3 HOH A 173 573 172 HOH HOH . D 3 HOH A 174 574 173 HOH HOH . D 3 HOH A 175 575 174 HOH HOH . D 3 HOH A 176 576 175 HOH HOH . D 3 HOH A 177 577 176 HOH HOH . D 3 HOH A 178 578 177 HOH HOH . D 3 HOH A 179 579 178 HOH HOH . D 3 HOH A 180 580 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -0.919 129.909 107.772 1 24.77 ? C1 MPD 301 A 1 HETATM 2 C C2 MPD . . . B 2 -1.424 128.47 107.533 1 21.98 ? C2 MPD 301 A 1 HETATM 3 O O2 MPD . . . B 2 -2.887 128.538 107.482 1 21.94 ? O2 MPD 301 A 1 HETATM 4 C CM MPD . . . B 2 -0.891 127.889 106.202 1 22.17 ? CM MPD 301 A 1 HETATM 5 C C3 MPD . . . B 2 -1.046 127.521 108.654 1 20.52 ? C3 MPD 301 A 1 HETATM 6 C C4 MPD . . . B 2 -1.465 128.031 110.031 1 20.32 ? C4 MPD 301 A 1 HETATM 7 O O4 MPD . . . B 2 -2.857 128.211 110.164 1 20.69 ? O4 MPD 301 A 1 HETATM 8 C C5 MPD . . . B 2 -1.079 126.951 111.044 1 20.44 ? C5 MPD 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #