data_4X58 # _model_server_result.job_id rEa4RrpdfBhSAvY8ACNmWg _model_server_result.datetime_utc '2024-11-26 04:01:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 4X58 # _exptl.entry_id 4X58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.3 _cell.angle_gamma 90 _cell.entry_id 4X58 _cell.length_a 94.739 _cell.length_b 78.067 _cell.length_c 101.331 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 127 A SER 119 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OD1 ASP 259 A ASP 251 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 A OE1 GLU 260 A GLU 252 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 A OE1 GLU 260 A GLU 252 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 G O2A PRP . A PRP 405 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 G O3B PRP . A PRP 405 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 H MG MG . A MG 406 1_555 L O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 H MG MG . A MG 406 1_555 L O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 H MG MG . A MG 406 1_555 L O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc10 H MG MG . A MG 406 1_555 L O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc11 I MG MG . A MG 407 1_555 L O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc12 I MG MG . A MG 407 1_555 L O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X58 _atom_sites.fract_transf_matrix[1][1] 0.010555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLT A 1 401 401 MLT MLT . D 3 GOL A 1 402 402 GOL GOL . E 3 GOL A 1 403 403 GOL GOL . F 3 GOL A 1 404 404 GOL GOL . G 4 PRP A 1 405 405 PRP PRP . H 5 MG A 1 406 406 MG MG . I 5 MG A 1 407 407 MG MG . J 3 GOL B 1 401 401 GOL GOL . K 6 IMD B 1 402 402 IMD IMD . L 7 HOH A 1 501 501 HOH HOH . L 7 HOH A 2 502 502 HOH HOH . L 7 HOH A 3 503 652 HOH HOH . L 7 HOH A 4 504 503 HOH HOH . L 7 HOH A 5 505 504 HOH HOH . L 7 HOH A 6 506 505 HOH HOH . L 7 HOH A 7 507 506 HOH HOH . L 7 HOH A 8 508 507 HOH HOH . L 7 HOH A 9 509 509 HOH HOH . L 7 HOH A 10 510 512 HOH HOH . L 7 HOH A 11 511 508 HOH HOH . L 7 HOH A 12 512 511 HOH HOH . L 7 HOH A 13 513 510 HOH HOH . L 7 HOH A 14 514 513 HOH HOH . L 7 HOH A 15 515 515 HOH HOH . L 7 HOH A 16 516 618 HOH HOH . L 7 HOH A 17 517 514 HOH HOH . L 7 HOH A 18 518 516 HOH HOH . L 7 HOH A 19 519 517 HOH HOH . L 7 HOH A 20 520 519 HOH HOH . L 7 HOH A 21 521 520 HOH HOH . L 7 HOH A 22 522 521 HOH HOH . L 7 HOH A 23 523 523 HOH HOH . L 7 HOH A 24 524 522 HOH HOH . L 7 HOH A 25 525 524 HOH HOH . L 7 HOH A 26 526 525 HOH HOH . L 7 HOH A 27 527 527 HOH HOH . L 7 HOH A 28 528 526 HOH HOH . L 7 HOH A 29 529 528 HOH HOH . L 7 HOH A 30 530 529 HOH HOH . L 7 HOH A 31 531 530 HOH HOH . L 7 HOH A 32 532 531 HOH HOH . L 7 HOH A 33 533 662 HOH HOH . L 7 HOH A 34 534 533 HOH HOH . L 7 HOH A 35 535 532 HOH HOH . L 7 HOH A 36 536 534 HOH HOH . L 7 HOH A 37 537 535 HOH HOH . L 7 HOH A 38 538 536 HOH HOH . L 7 HOH A 39 539 538 HOH HOH . L 7 HOH A 40 540 539 HOH HOH . L 7 HOH A 41 541 573 HOH HOH . L 7 HOH A 42 542 540 HOH HOH . L 7 HOH A 43 543 541 HOH HOH . L 7 HOH A 44 544 647 HOH HOH . L 7 HOH A 45 545 537 HOH HOH . L 7 HOH A 46 546 542 HOH HOH . L 7 HOH A 47 547 543 HOH HOH . L 7 HOH A 48 548 544 HOH HOH . L 7 HOH A 49 549 545 HOH HOH . L 7 HOH A 50 550 546 HOH HOH . L 7 HOH A 51 551 547 HOH HOH . L 7 HOH A 52 552 548 HOH HOH . L 7 HOH A 53 553 549 HOH HOH . L 7 HOH A 54 554 550 HOH HOH . L 7 HOH A 55 555 551 HOH HOH . L 7 HOH A 56 556 552 HOH HOH . L 7 HOH A 57 557 553 HOH HOH . L 7 HOH A 58 558 554 HOH HOH . L 7 HOH A 59 559 555 HOH HOH . L 7 HOH A 60 560 556 HOH HOH . L 7 HOH A 61 561 557 HOH HOH . L 7 HOH A 62 562 558 HOH HOH . L 7 HOH A 63 563 559 HOH HOH . L 7 HOH A 64 564 560 HOH HOH . L 7 HOH A 65 565 561 HOH HOH . L 7 HOH A 66 566 562 HOH HOH . L 7 HOH A 67 567 563 HOH HOH . L 7 HOH A 68 568 564 HOH HOH . L 7 HOH A 69 569 565 HOH HOH . L 7 HOH A 70 570 566 HOH HOH . L 7 HOH A 71 571 567 HOH HOH . L 7 HOH A 72 572 568 HOH HOH . L 7 HOH A 73 573 569 HOH HOH . L 7 HOH A 74 574 570 HOH HOH . L 7 HOH A 75 575 571 HOH HOH . L 7 HOH A 76 576 572 HOH HOH . L 7 HOH A 77 577 574 HOH HOH . L 7 HOH A 78 578 575 HOH HOH . L 7 HOH A 79 579 576 HOH HOH . L 7 HOH A 80 580 577 HOH HOH . L 7 HOH A 81 581 578 HOH HOH . L 7 HOH A 82 582 579 HOH HOH . L 7 HOH A 83 583 580 HOH HOH . L 7 HOH A 84 584 581 HOH HOH . L 7 HOH A 85 585 582 HOH HOH . L 7 HOH A 86 586 583 HOH HOH . L 7 HOH A 87 587 584 HOH HOH . L 7 HOH A 88 588 585 HOH HOH . L 7 HOH A 89 589 586 HOH HOH . L 7 HOH A 90 590 587 HOH HOH . L 7 HOH A 91 591 588 HOH HOH . L 7 HOH A 92 592 589 HOH HOH . L 7 HOH A 93 593 590 HOH HOH . L 7 HOH A 94 594 591 HOH HOH . L 7 HOH A 95 595 592 HOH HOH . L 7 HOH A 96 596 593 HOH HOH . L 7 HOH A 97 597 594 HOH HOH . L 7 HOH A 98 598 595 HOH HOH . L 7 HOH A 99 599 596 HOH HOH . L 7 HOH A 100 600 597 HOH HOH . L 7 HOH A 101 601 598 HOH HOH . L 7 HOH A 102 602 599 HOH HOH . L 7 HOH A 103 603 600 HOH HOH . L 7 HOH A 104 604 601 HOH HOH . L 7 HOH A 105 605 602 HOH HOH . L 7 HOH A 106 606 603 HOH HOH . L 7 HOH A 107 607 604 HOH HOH . L 7 HOH A 108 608 605 HOH HOH . L 7 HOH A 109 609 606 HOH HOH . L 7 HOH A 110 610 607 HOH HOH . L 7 HOH A 111 611 608 HOH HOH . L 7 HOH A 112 612 609 HOH HOH . L 7 HOH A 113 613 610 HOH HOH . L 7 HOH A 114 614 611 HOH HOH . L 7 HOH A 115 615 612 HOH HOH . L 7 HOH A 116 616 613 HOH HOH . L 7 HOH A 117 617 614 HOH HOH . L 7 HOH A 118 618 615 HOH HOH . L 7 HOH A 119 619 616 HOH HOH . L 7 HOH A 120 620 617 HOH HOH . L 7 HOH A 121 621 619 HOH HOH . L 7 HOH A 122 622 620 HOH HOH . L 7 HOH A 123 623 621 HOH HOH . L 7 HOH A 124 624 622 HOH HOH . L 7 HOH A 125 625 623 HOH HOH . L 7 HOH A 126 626 624 HOH HOH . L 7 HOH A 127 627 625 HOH HOH . L 7 HOH A 128 628 626 HOH HOH . L 7 HOH A 129 629 627 HOH HOH . L 7 HOH A 130 630 628 HOH HOH . L 7 HOH A 131 631 629 HOH HOH . L 7 HOH A 132 632 630 HOH HOH . L 7 HOH A 133 633 631 HOH HOH . L 7 HOH A 134 634 632 HOH HOH . L 7 HOH A 135 635 633 HOH HOH . L 7 HOH A 136 636 634 HOH HOH . L 7 HOH A 137 637 635 HOH HOH . L 7 HOH A 138 638 636 HOH HOH . L 7 HOH A 139 639 637 HOH HOH . L 7 HOH A 140 640 638 HOH HOH . L 7 HOH A 141 641 639 HOH HOH . L 7 HOH A 142 642 640 HOH HOH . L 7 HOH A 143 643 641 HOH HOH . L 7 HOH A 144 644 642 HOH HOH . L 7 HOH A 145 645 643 HOH HOH . L 7 HOH A 146 646 644 HOH HOH . L 7 HOH A 147 647 645 HOH HOH . L 7 HOH A 148 648 646 HOH HOH . L 7 HOH A 149 649 648 HOH HOH . L 7 HOH A 150 650 649 HOH HOH . L 7 HOH A 151 651 650 HOH HOH . L 7 HOH A 152 652 651 HOH HOH . L 7 HOH A 153 653 653 HOH HOH . L 7 HOH A 154 654 654 HOH HOH . L 7 HOH A 155 655 655 HOH HOH . L 7 HOH A 156 656 656 HOH HOH . L 7 HOH A 157 657 657 HOH HOH . L 7 HOH A 158 658 658 HOH HOH . L 7 HOH A 159 659 659 HOH HOH . L 7 HOH A 160 660 660 HOH HOH . L 7 HOH A 161 661 661 HOH HOH . L 7 HOH A 162 662 663 HOH HOH . L 7 HOH A 163 663 664 HOH HOH . M 7 HOH B 1 501 597 HOH HOH . M 7 HOH B 2 502 501 HOH HOH . M 7 HOH B 3 503 502 HOH HOH . M 7 HOH B 4 504 576 HOH HOH . M 7 HOH B 5 505 503 HOH HOH . M 7 HOH B 6 506 583 HOH HOH . M 7 HOH B 7 507 504 HOH HOH . M 7 HOH B 8 508 505 HOH HOH . M 7 HOH B 9 509 508 HOH HOH . M 7 HOH B 10 510 506 HOH HOH . M 7 HOH B 11 511 509 HOH HOH . M 7 HOH B 12 512 510 HOH HOH . M 7 HOH B 13 513 512 HOH HOH . M 7 HOH B 14 514 513 HOH HOH . M 7 HOH B 15 515 511 HOH HOH . M 7 HOH B 16 516 515 HOH HOH . M 7 HOH B 17 517 514 HOH HOH . M 7 HOH B 18 518 516 HOH HOH . M 7 HOH B 19 519 518 HOH HOH . M 7 HOH B 20 520 517 HOH HOH . M 7 HOH B 21 521 519 HOH HOH . M 7 HOH B 22 522 520 HOH HOH . M 7 HOH B 23 523 522 HOH HOH . M 7 HOH B 24 524 521 HOH HOH . M 7 HOH B 25 525 523 HOH HOH . M 7 HOH B 26 526 525 HOH HOH . M 7 HOH B 27 527 526 HOH HOH . M 7 HOH B 28 528 590 HOH HOH . M 7 HOH B 29 529 527 HOH HOH . M 7 HOH B 30 530 528 HOH HOH . M 7 HOH B 31 531 530 HOH HOH . M 7 HOH B 32 532 529 HOH HOH . M 7 HOH B 33 533 531 HOH HOH . M 7 HOH B 34 534 606 HOH HOH . M 7 HOH B 35 535 532 HOH HOH . M 7 HOH B 36 536 610 HOH HOH . M 7 HOH B 37 537 534 HOH HOH . M 7 HOH B 38 538 592 HOH HOH . M 7 HOH B 39 539 518 HOH HOH . M 7 HOH B 40 540 507 HOH HOH . M 7 HOH B 41 541 524 HOH HOH . M 7 HOH B 42 542 533 HOH HOH . M 7 HOH B 43 543 535 HOH HOH . M 7 HOH B 44 544 536 HOH HOH . M 7 HOH B 45 545 537 HOH HOH . M 7 HOH B 46 546 538 HOH HOH . M 7 HOH B 47 547 539 HOH HOH . M 7 HOH B 48 548 540 HOH HOH . M 7 HOH B 49 549 541 HOH HOH . M 7 HOH B 50 550 542 HOH HOH . M 7 HOH B 51 551 543 HOH HOH . M 7 HOH B 52 552 544 HOH HOH . M 7 HOH B 53 553 545 HOH HOH . M 7 HOH B 54 554 546 HOH HOH . M 7 HOH B 55 555 547 HOH HOH . M 7 HOH B 56 556 548 HOH HOH . M 7 HOH B 57 557 549 HOH HOH . M 7 HOH B 58 558 550 HOH HOH . M 7 HOH B 59 559 551 HOH HOH . M 7 HOH B 60 560 552 HOH HOH . M 7 HOH B 61 561 553 HOH HOH . M 7 HOH B 62 562 554 HOH HOH . M 7 HOH B 63 563 555 HOH HOH . M 7 HOH B 64 564 556 HOH HOH . M 7 HOH B 65 565 557 HOH HOH . M 7 HOH B 66 566 558 HOH HOH . M 7 HOH B 67 567 559 HOH HOH . M 7 HOH B 68 568 560 HOH HOH . M 7 HOH B 69 569 561 HOH HOH . M 7 HOH B 70 570 562 HOH HOH . M 7 HOH B 71 571 563 HOH HOH . M 7 HOH B 72 572 564 HOH HOH . M 7 HOH B 73 573 565 HOH HOH . M 7 HOH B 74 574 566 HOH HOH . M 7 HOH B 75 575 567 HOH HOH . M 7 HOH B 76 576 568 HOH HOH . M 7 HOH B 77 577 569 HOH HOH . M 7 HOH B 78 578 570 HOH HOH . M 7 HOH B 79 579 571 HOH HOH . M 7 HOH B 80 580 572 HOH HOH . M 7 HOH B 81 581 573 HOH HOH . M 7 HOH B 82 582 574 HOH HOH . M 7 HOH B 83 583 575 HOH HOH . M 7 HOH B 84 584 577 HOH HOH . M 7 HOH B 85 585 578 HOH HOH . M 7 HOH B 86 586 579 HOH HOH . M 7 HOH B 87 587 580 HOH HOH . M 7 HOH B 88 588 581 HOH HOH . M 7 HOH B 89 589 582 HOH HOH . M 7 HOH B 90 590 584 HOH HOH . M 7 HOH B 91 591 585 HOH HOH . M 7 HOH B 92 592 586 HOH HOH . M 7 HOH B 93 593 587 HOH HOH . M 7 HOH B 94 594 588 HOH HOH . M 7 HOH B 95 595 589 HOH HOH . M 7 HOH B 96 596 591 HOH HOH . M 7 HOH B 97 597 593 HOH HOH . M 7 HOH B 98 598 594 HOH HOH . M 7 HOH B 99 599 595 HOH HOH . M 7 HOH B 100 600 596 HOH HOH . M 7 HOH B 101 601 598 HOH HOH . M 7 HOH B 102 602 599 HOH HOH . M 7 HOH B 103 603 600 HOH HOH . M 7 HOH B 104 604 601 HOH HOH . M 7 HOH B 105 605 602 HOH HOH . M 7 HOH B 106 606 603 HOH HOH . M 7 HOH B 107 607 604 HOH HOH . M 7 HOH B 108 608 605 HOH HOH . M 7 HOH B 109 609 607 HOH HOH . M 7 HOH B 110 610 608 HOH HOH . M 7 HOH B 111 611 609 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.452 _atom_site.Cartn_y 14.054 _atom_site.Cartn_z 32.925 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #