data_4X5C # _model_server_result.job_id FhT0zjsV3wMTZ9NVNP6FYg _model_server_result.datetime_utc '2024-11-07 19:01:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4X5C # _exptl.entry_id 4X5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.6 _cell.angle_gamma 90 _cell.entry_id 4X5C _cell.length_a 94.485 _cell.length_b 78.106 _cell.length_c 100.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 119 A SER 119 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc2 A OD1 ASP 251 A ASP 251 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A OE1 GLU 252 A GLU 252 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc4 A OE1 GLU 252 A GLU 252 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 C O2A PRP . A PRP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc6 C O3A PRP . A PRP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc7 C O3B PRP . A PRP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc8 D MG MG . A MG 402 1_555 I O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc9 D MG MG . A MG 402 1_555 I O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc10 D MG MG . A MG 402 1_555 I O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc11 E MG MG . A MG 403 1_555 I O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 E MG MG . A MG 403 1_555 I O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 B OG SER 119 B SER 119 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc14 B OD1 ASP 251 B ASP 251 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc15 B OE2 GLU 252 B GLU 252 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc16 B OE2 GLU 252 B GLU 252 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc17 F O3 POP . B POP 401 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? metalc ? metalc18 F O6 POP . B POP 401 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc19 G MG MG . B MG 402 1_555 J O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc20 G MG MG . B MG 402 1_555 J O HOH . B HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc21 H MG MG . B MG 403 1_555 J O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc22 H MG MG . B MG 403 1_555 J O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc23 H MG MG . B MG 403 1_555 J O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc24 H MG MG . B MG 403 1_555 J O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X5C _atom_sites.fract_transf_matrix[1][1] 0.010584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003979 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRP A 1 401 401 PRP PRP . D 3 MG A 1 402 402 MG MG . E 3 MG A 1 403 403 MG MG . F 4 POP B 1 401 401 POP POP . G 3 MG B 1 402 402 MG MG . H 3 MG B 1 403 403 MG MG . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 502 502 HOH HOH . I 5 HOH A 3 503 503 HOH HOH . I 5 HOH A 4 504 505 HOH HOH . I 5 HOH A 5 505 506 HOH HOH . I 5 HOH A 6 506 504 HOH HOH . I 5 HOH A 7 507 507 HOH HOH . I 5 HOH A 8 508 508 HOH HOH . I 5 HOH A 9 509 509 HOH HOH . I 5 HOH A 10 510 510 HOH HOH . I 5 HOH A 11 511 511 HOH HOH . I 5 HOH A 12 512 512 HOH HOH . I 5 HOH A 13 513 513 HOH HOH . I 5 HOH A 14 514 514 HOH HOH . I 5 HOH A 15 515 515 HOH HOH . I 5 HOH A 16 516 516 HOH HOH . I 5 HOH A 17 517 517 HOH HOH . I 5 HOH A 18 518 518 HOH HOH . I 5 HOH A 19 519 519 HOH HOH . I 5 HOH A 20 520 520 HOH HOH . I 5 HOH A 21 521 521 HOH HOH . I 5 HOH A 22 522 522 HOH HOH . I 5 HOH A 23 523 523 HOH HOH . I 5 HOH A 24 524 524 HOH HOH . I 5 HOH A 25 525 525 HOH HOH . I 5 HOH A 26 526 526 HOH HOH . I 5 HOH A 27 527 527 HOH HOH . I 5 HOH A 28 528 528 HOH HOH . I 5 HOH A 29 529 529 HOH HOH . I 5 HOH A 30 530 530 HOH HOH . I 5 HOH A 31 531 531 HOH HOH . I 5 HOH A 32 532 532 HOH HOH . I 5 HOH A 33 533 533 HOH HOH . I 5 HOH A 34 534 534 HOH HOH . I 5 HOH A 35 535 535 HOH HOH . I 5 HOH A 36 536 536 HOH HOH . I 5 HOH A 37 537 537 HOH HOH . J 5 HOH B 1 501 501 HOH HOH . J 5 HOH B 2 502 502 HOH HOH . J 5 HOH B 3 503 504 HOH HOH . J 5 HOH B 4 504 505 HOH HOH . J 5 HOH B 5 505 503 HOH HOH . J 5 HOH B 6 506 506 HOH HOH . J 5 HOH B 7 507 507 HOH HOH . J 5 HOH B 8 508 508 HOH HOH . J 5 HOH B 9 509 509 HOH HOH . J 5 HOH B 10 510 510 HOH HOH . J 5 HOH B 11 511 511 HOH HOH . J 5 HOH B 12 512 512 HOH HOH . J 5 HOH B 13 513 513 HOH HOH . J 5 HOH B 14 514 514 HOH HOH . J 5 HOH B 15 515 515 HOH HOH . J 5 HOH B 16 516 516 HOH HOH . J 5 HOH B 17 517 517 HOH HOH . J 5 HOH B 18 518 518 HOH HOH . J 5 HOH B 19 519 519 HOH HOH . J 5 HOH B 20 520 520 HOH HOH . J 5 HOH B 21 521 521 HOH HOH . J 5 HOH B 22 522 522 HOH HOH . J 5 HOH B 23 523 523 HOH HOH . J 5 HOH B 24 524 524 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.712 _atom_site.Cartn_y 13.801 _atom_site.Cartn_z 32.259 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #