data_4X5D # _model_server_result.job_id cpisdndiyjdiSpMGiIolFg _model_server_result.datetime_utc '2024-11-07 19:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4X5D # _exptl.entry_id 4X5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X5D _cell.length_a 79.95 _cell.length_b 91.646 _cell.length_c 120.832 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 203 n y N1 C5 IMD sing 204 n y N1 HN1 IMD sing 205 n n C2 N3 IMD doub 206 n y C2 H2 IMD sing 207 n n N3 C4 IMD sing 208 n y N3 HN3 IMD sing 209 n n C4 C5 IMD doub 210 n y C4 H4 IMD sing 211 n n C5 H5 IMD sing 212 n n # _atom_sites.entry_id 4X5D _atom_sites.fract_transf_matrix[1][1] 0.012508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BE2 A 1 401 375 BE2 BE2 . D 3 IMD A 1 402 376 IMD IMD . E 4 GOL A 1 403 377 GOL GOL . F 2 BE2 B 1 401 375 BE2 BE2 . G 4 GOL B 1 402 376 GOL GOL . H 5 HOH A 1 501 244 HOH HOH . H 5 HOH A 2 502 159 HOH HOH . H 5 HOH A 3 503 21 HOH HOH . H 5 HOH A 4 504 79 HOH HOH . H 5 HOH A 5 505 59 HOH HOH . H 5 HOH A 6 506 27 HOH HOH . H 5 HOH A 7 507 70 HOH HOH . H 5 HOH A 8 508 3 HOH HOH . H 5 HOH A 9 509 12 HOH HOH . H 5 HOH A 10 510 142 HOH HOH . H 5 HOH A 11 511 107 HOH HOH . H 5 HOH A 12 512 196 HOH HOH . H 5 HOH A 13 513 8 HOH HOH . H 5 HOH A 14 514 105 HOH HOH . H 5 HOH A 15 515 32 HOH HOH . H 5 HOH A 16 516 160 HOH HOH . H 5 HOH A 17 517 9 HOH HOH . H 5 HOH A 18 518 158 HOH HOH . H 5 HOH A 19 519 109 HOH HOH . H 5 HOH A 20 520 130 HOH HOH . H 5 HOH A 21 521 35 HOH HOH . H 5 HOH A 22 522 228 HOH HOH . H 5 HOH A 23 523 206 HOH HOH . H 5 HOH A 24 524 152 HOH HOH . H 5 HOH A 25 525 179 HOH HOH . H 5 HOH A 26 526 41 HOH HOH . H 5 HOH A 27 527 89 HOH HOH . H 5 HOH A 28 528 126 HOH HOH . H 5 HOH A 29 529 30 HOH HOH . H 5 HOH A 30 530 220 HOH HOH . H 5 HOH A 31 531 178 HOH HOH . H 5 HOH A 32 532 153 HOH HOH . H 5 HOH A 33 533 157 HOH HOH . H 5 HOH A 34 534 49 HOH HOH . H 5 HOH A 35 535 2 HOH HOH . H 5 HOH A 36 536 4 HOH HOH . H 5 HOH A 37 537 6 HOH HOH . H 5 HOH A 38 538 7 HOH HOH . H 5 HOH A 39 539 10 HOH HOH . H 5 HOH A 40 540 11 HOH HOH . H 5 HOH A 41 541 13 HOH HOH . H 5 HOH A 42 542 14 HOH HOH . H 5 HOH A 43 543 15 HOH HOH . H 5 HOH A 44 544 16 HOH HOH . H 5 HOH A 45 545 17 HOH HOH . H 5 HOH A 46 546 18 HOH HOH . H 5 HOH A 47 547 23 HOH HOH . H 5 HOH A 48 548 25 HOH HOH . H 5 HOH A 49 549 26 HOH HOH . H 5 HOH A 50 550 28 HOH HOH . H 5 HOH A 51 551 31 HOH HOH . H 5 HOH A 52 552 34 HOH HOH . H 5 HOH A 53 553 39 HOH HOH . H 5 HOH A 54 554 40 HOH HOH . H 5 HOH A 55 555 46 HOH HOH . H 5 HOH A 56 556 47 HOH HOH . H 5 HOH A 57 557 51 HOH HOH . H 5 HOH A 58 558 53 HOH HOH . H 5 HOH A 59 559 54 HOH HOH . H 5 HOH A 60 560 55 HOH HOH . H 5 HOH A 61 561 56 HOH HOH . H 5 HOH A 62 562 57 HOH HOH . H 5 HOH A 63 563 60 HOH HOH . H 5 HOH A 64 564 73 HOH HOH . H 5 HOH A 65 565 80 HOH HOH . H 5 HOH A 66 566 81 HOH HOH . H 5 HOH A 67 567 82 HOH HOH . H 5 HOH A 68 568 86 HOH HOH . H 5 HOH A 69 569 87 HOH HOH . H 5 HOH A 70 570 90 HOH HOH . H 5 HOH A 71 571 91 HOH HOH . H 5 HOH A 72 572 93 HOH HOH . H 5 HOH A 73 573 95 HOH HOH . H 5 HOH A 74 574 97 HOH HOH . H 5 HOH A 75 575 98 HOH HOH . H 5 HOH A 76 576 99 HOH HOH . H 5 HOH A 77 577 112 HOH HOH . H 5 HOH A 78 578 113 HOH HOH . H 5 HOH A 79 579 116 HOH HOH . H 5 HOH A 80 580 119 HOH HOH . H 5 HOH A 81 581 120 HOH HOH . H 5 HOH A 82 582 123 HOH HOH . H 5 HOH A 83 583 124 HOH HOH . H 5 HOH A 84 584 125 HOH HOH . H 5 HOH A 85 585 131 HOH HOH . H 5 HOH A 86 586 132 HOH HOH . H 5 HOH A 87 587 133 HOH HOH . H 5 HOH A 88 588 138 HOH HOH . H 5 HOH A 89 589 139 HOH HOH . H 5 HOH A 90 590 141 HOH HOH . H 5 HOH A 91 591 146 HOH HOH . H 5 HOH A 92 592 147 HOH HOH . H 5 HOH A 93 593 150 HOH HOH . H 5 HOH A 94 594 151 HOH HOH . H 5 HOH A 95 595 168 HOH HOH . H 5 HOH A 96 596 173 HOH HOH . H 5 HOH A 97 597 174 HOH HOH . H 5 HOH A 98 598 180 HOH HOH . H 5 HOH A 99 599 186 HOH HOH . H 5 HOH A 100 600 187 HOH HOH . H 5 HOH A 101 601 188 HOH HOH . H 5 HOH A 102 602 191 HOH HOH . H 5 HOH A 103 603 193 HOH HOH . H 5 HOH A 104 604 199 HOH HOH . H 5 HOH A 105 605 200 HOH HOH . H 5 HOH A 106 606 201 HOH HOH . H 5 HOH A 107 607 207 HOH HOH . H 5 HOH A 108 608 209 HOH HOH . H 5 HOH A 109 609 210 HOH HOH . H 5 HOH A 110 610 212 HOH HOH . H 5 HOH A 111 611 214 HOH HOH . H 5 HOH A 112 612 221 HOH HOH . H 5 HOH A 113 613 229 HOH HOH . H 5 HOH A 114 614 238 HOH HOH . H 5 HOH A 115 615 239 HOH HOH . H 5 HOH A 116 616 240 HOH HOH . I 5 HOH B 1 501 232 HOH HOH . I 5 HOH B 2 502 58 HOH HOH . I 5 HOH B 3 503 183 HOH HOH . I 5 HOH B 4 504 77 HOH HOH . I 5 HOH B 5 505 167 HOH HOH . I 5 HOH B 6 506 48 HOH HOH . I 5 HOH B 7 507 67 HOH HOH . I 5 HOH B 8 508 163 HOH HOH . I 5 HOH B 9 509 45 HOH HOH . I 5 HOH B 10 510 211 HOH HOH . I 5 HOH B 11 511 144 HOH HOH . I 5 HOH B 12 512 161 HOH HOH . I 5 HOH B 13 513 71 HOH HOH . I 5 HOH B 14 514 22 HOH HOH . I 5 HOH B 15 515 114 HOH HOH . I 5 HOH B 16 516 219 HOH HOH . I 5 HOH B 17 517 241 HOH HOH . I 5 HOH B 18 518 202 HOH HOH . I 5 HOH B 19 519 149 HOH HOH . I 5 HOH B 20 520 164 HOH HOH . I 5 HOH B 21 521 85 HOH HOH . I 5 HOH B 22 522 68 HOH HOH . I 5 HOH B 23 523 222 HOH HOH . I 5 HOH B 24 524 203 HOH HOH . I 5 HOH B 25 525 165 HOH HOH . I 5 HOH B 26 526 166 HOH HOH . I 5 HOH B 27 527 204 HOH HOH . I 5 HOH B 28 528 190 HOH HOH . I 5 HOH B 29 529 217 HOH HOH . I 5 HOH B 30 530 218 HOH HOH . I 5 HOH B 31 531 111 HOH HOH . I 5 HOH B 32 532 1 HOH HOH . I 5 HOH B 33 533 5 HOH HOH . I 5 HOH B 34 534 19 HOH HOH . I 5 HOH B 35 535 20 HOH HOH . I 5 HOH B 36 536 24 HOH HOH . I 5 HOH B 37 537 29 HOH HOH . I 5 HOH B 38 538 33 HOH HOH . I 5 HOH B 39 539 36 HOH HOH . I 5 HOH B 40 540 37 HOH HOH . I 5 HOH B 41 541 38 HOH HOH . I 5 HOH B 42 542 42 HOH HOH . I 5 HOH B 43 543 43 HOH HOH . I 5 HOH B 44 544 50 HOH HOH . I 5 HOH B 45 545 52 HOH HOH . I 5 HOH B 46 546 61 HOH HOH . I 5 HOH B 47 547 62 HOH HOH . I 5 HOH B 48 548 63 HOH HOH . I 5 HOH B 49 549 64 HOH HOH . I 5 HOH B 50 550 65 HOH HOH . I 5 HOH B 51 551 66 HOH HOH . I 5 HOH B 52 552 69 HOH HOH . I 5 HOH B 53 553 72 HOH HOH . I 5 HOH B 54 554 74 HOH HOH . I 5 HOH B 55 555 75 HOH HOH . I 5 HOH B 56 556 78 HOH HOH . I 5 HOH B 57 557 83 HOH HOH . I 5 HOH B 58 558 84 HOH HOH . I 5 HOH B 59 559 88 HOH HOH . I 5 HOH B 60 560 92 HOH HOH . I 5 HOH B 61 561 94 HOH HOH . I 5 HOH B 62 562 96 HOH HOH . I 5 HOH B 63 563 100 HOH HOH . I 5 HOH B 64 564 101 HOH HOH . I 5 HOH B 65 565 102 HOH HOH . I 5 HOH B 66 566 103 HOH HOH . I 5 HOH B 67 567 104 HOH HOH . I 5 HOH B 68 568 108 HOH HOH . I 5 HOH B 69 569 110 HOH HOH . I 5 HOH B 70 570 115 HOH HOH . I 5 HOH B 71 571 118 HOH HOH . I 5 HOH B 72 572 121 HOH HOH . I 5 HOH B 73 573 122 HOH HOH . I 5 HOH B 74 574 127 HOH HOH . I 5 HOH B 75 575 128 HOH HOH . I 5 HOH B 76 576 129 HOH HOH . I 5 HOH B 77 577 134 HOH HOH . I 5 HOH B 78 578 135 HOH HOH . I 5 HOH B 79 579 136 HOH HOH . I 5 HOH B 80 580 140 HOH HOH . I 5 HOH B 81 581 143 HOH HOH . I 5 HOH B 82 582 145 HOH HOH . I 5 HOH B 83 583 148 HOH HOH . I 5 HOH B 84 584 154 HOH HOH . I 5 HOH B 85 585 155 HOH HOH . I 5 HOH B 86 586 156 HOH HOH . I 5 HOH B 87 587 162 HOH HOH . I 5 HOH B 88 588 169 HOH HOH . I 5 HOH B 89 589 170 HOH HOH . I 5 HOH B 90 590 171 HOH HOH . I 5 HOH B 91 591 172 HOH HOH . I 5 HOH B 92 592 175 HOH HOH . I 5 HOH B 93 593 176 HOH HOH . I 5 HOH B 94 594 177 HOH HOH . I 5 HOH B 95 595 181 HOH HOH . I 5 HOH B 96 596 182 HOH HOH . I 5 HOH B 97 597 184 HOH HOH . I 5 HOH B 98 598 185 HOH HOH . I 5 HOH B 99 599 192 HOH HOH . I 5 HOH B 100 600 194 HOH HOH . I 5 HOH B 101 601 195 HOH HOH . I 5 HOH B 102 602 197 HOH HOH . I 5 HOH B 103 603 205 HOH HOH . I 5 HOH B 104 604 208 HOH HOH . I 5 HOH B 105 605 213 HOH HOH . I 5 HOH B 106 606 216 HOH HOH . I 5 HOH B 107 607 223 HOH HOH . I 5 HOH B 108 608 224 HOH HOH . I 5 HOH B 109 609 227 HOH HOH . I 5 HOH B 110 610 230 HOH HOH . I 5 HOH B 111 611 231 HOH HOH . I 5 HOH B 112 612 233 HOH HOH . I 5 HOH B 113 613 234 HOH HOH . I 5 HOH B 114 614 235 HOH HOH . I 5 HOH B 115 615 236 HOH HOH . I 5 HOH B 116 616 237 HOH HOH . I 5 HOH B 117 617 242 HOH HOH . I 5 HOH B 118 618 243 HOH HOH . I 5 HOH B 119 619 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 3 29.724 27.933 -63.045 1 49.88 ? N1 IMD 402 A 1 HETATM 2 C C2 IMD . . . D 3 29.03 29.088 -62.882 1 50.25 ? C2 IMD 402 A 1 HETATM 3 N N3 IMD . . . D 3 29.38 29.953 -63.865 1 51.43 ? N3 IMD 402 A 1 HETATM 4 C C4 IMD . . . D 3 30.305 29.337 -64.649 1 49.98 ? C4 IMD 402 A 1 HETATM 5 C C5 IMD . . . D 3 30.52 28.072 -64.128 1 50.65 ? C5 IMD 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #