data_4X5F # _model_server_result.job_id VVtJ1EKr0y3frx60-Qto0Q _model_server_result.datetime_utc '2025-04-19 05:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 4X5F # _exptl.entry_id 4X5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.82 _cell.angle_gamma 90 _cell.entry_id 4X5F _cell.length_a 38.956 _cell.length_b 59.926 _cell.length_c 72.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 155 A CYS 152 1_555 E S2 BME . A BME 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? covale ? covale2 B SG CYS 155 B CYS 152 1_555 H S2 BME . B BME 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 4X5F _atom_sites.fract_transf_matrix[1][1] 0.02567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005839 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FOL A 1 201 160 FOL FOL . D 3 NAP A 1 202 161 NAP NAP . E 4 BME A 1 203 162 BME BME . F 2 FOL B 1 201 160 FOL FOL . G 3 NAP B 1 202 161 NAP NAP . H 4 BME B 1 203 162 BME BME . I 5 HOH A 1 301 182 HOH HOH . I 5 HOH A 2 302 211 HOH HOH . I 5 HOH A 3 303 175 HOH HOH . I 5 HOH A 4 304 40 HOH HOH . I 5 HOH A 5 305 28 HOH HOH . I 5 HOH A 6 306 29 HOH HOH . I 5 HOH A 7 307 77 HOH HOH . I 5 HOH A 8 308 5 HOH HOH . I 5 HOH A 9 309 194 HOH HOH . I 5 HOH A 10 310 159 HOH HOH . I 5 HOH A 11 311 179 HOH HOH . I 5 HOH A 12 312 87 HOH HOH . I 5 HOH A 13 313 20 HOH HOH . I 5 HOH A 14 314 191 HOH HOH . I 5 HOH A 15 315 157 HOH HOH . I 5 HOH A 16 316 42 HOH HOH . I 5 HOH A 17 317 4 HOH HOH . I 5 HOH A 18 318 13 HOH HOH . I 5 HOH A 19 319 176 HOH HOH . I 5 HOH A 20 320 168 HOH HOH . I 5 HOH A 21 321 174 HOH HOH . I 5 HOH A 22 322 17 HOH HOH . I 5 HOH A 23 323 14 HOH HOH . I 5 HOH A 24 324 89 HOH HOH . I 5 HOH A 25 325 27 HOH HOH . I 5 HOH A 26 326 6 HOH HOH . I 5 HOH A 27 327 170 HOH HOH . I 5 HOH A 28 328 192 HOH HOH . I 5 HOH A 29 329 96 HOH HOH . I 5 HOH A 30 330 144 HOH HOH . I 5 HOH A 31 331 44 HOH HOH . I 5 HOH A 32 332 8 HOH HOH . I 5 HOH A 33 333 202 HOH HOH . I 5 HOH A 34 334 148 HOH HOH . I 5 HOH A 35 335 31 HOH HOH . I 5 HOH A 36 336 79 HOH HOH . I 5 HOH A 37 337 172 HOH HOH . I 5 HOH A 38 338 113 HOH HOH . I 5 HOH A 39 339 101 HOH HOH . I 5 HOH A 40 340 46 HOH HOH . I 5 HOH A 41 341 32 HOH HOH . I 5 HOH A 42 342 64 HOH HOH . I 5 HOH A 43 343 187 HOH HOH . I 5 HOH A 44 344 154 HOH HOH . I 5 HOH A 45 345 104 HOH HOH . I 5 HOH A 46 346 38 HOH HOH . I 5 HOH A 47 347 76 HOH HOH . I 5 HOH A 48 348 65 HOH HOH . I 5 HOH A 49 349 186 HOH HOH . I 5 HOH A 50 350 92 HOH HOH . I 5 HOH A 51 351 207 HOH HOH . I 5 HOH A 52 352 69 HOH HOH . I 5 HOH A 53 353 80 HOH HOH . I 5 HOH A 54 354 165 HOH HOH . I 5 HOH A 55 355 151 HOH HOH . I 5 HOH A 56 356 161 HOH HOH . I 5 HOH A 57 357 26 HOH HOH . I 5 HOH A 58 358 1 HOH HOH . I 5 HOH A 59 359 15 HOH HOH . I 5 HOH A 60 360 21 HOH HOH . I 5 HOH A 61 361 24 HOH HOH . I 5 HOH A 62 362 25 HOH HOH . I 5 HOH A 63 363 34 HOH HOH . I 5 HOH A 64 364 43 HOH HOH . I 5 HOH A 65 365 45 HOH HOH . I 5 HOH A 66 366 49 HOH HOH . I 5 HOH A 67 367 55 HOH HOH . I 5 HOH A 68 368 59 HOH HOH . I 5 HOH A 69 369 60 HOH HOH . I 5 HOH A 70 370 61 HOH HOH . I 5 HOH A 71 371 68 HOH HOH . I 5 HOH A 72 372 70 HOH HOH . I 5 HOH A 73 373 84 HOH HOH . I 5 HOH A 74 374 85 HOH HOH . I 5 HOH A 75 375 91 HOH HOH . I 5 HOH A 76 376 93 HOH HOH . I 5 HOH A 77 377 94 HOH HOH . I 5 HOH A 78 378 106 HOH HOH . I 5 HOH A 79 379 107 HOH HOH . I 5 HOH A 80 380 110 HOH HOH . I 5 HOH A 81 381 114 HOH HOH . I 5 HOH A 82 382 118 HOH HOH . I 5 HOH A 83 383 125 HOH HOH . I 5 HOH A 84 384 126 HOH HOH . I 5 HOH A 85 385 127 HOH HOH . I 5 HOH A 86 386 130 HOH HOH . I 5 HOH A 87 387 133 HOH HOH . I 5 HOH A 88 388 136 HOH HOH . I 5 HOH A 89 389 141 HOH HOH . I 5 HOH A 90 390 146 HOH HOH . I 5 HOH A 91 391 147 HOH HOH . I 5 HOH A 92 392 152 HOH HOH . I 5 HOH A 93 393 153 HOH HOH . I 5 HOH A 94 394 155 HOH HOH . I 5 HOH A 95 395 158 HOH HOH . I 5 HOH A 96 396 160 HOH HOH . I 5 HOH A 97 397 162 HOH HOH . I 5 HOH A 98 398 163 HOH HOH . I 5 HOH A 99 399 167 HOH HOH . I 5 HOH A 100 400 171 HOH HOH . I 5 HOH A 101 401 177 HOH HOH . I 5 HOH A 102 402 181 HOH HOH . I 5 HOH A 103 403 195 HOH HOH . I 5 HOH A 104 404 198 HOH HOH . I 5 HOH A 105 405 199 HOH HOH . I 5 HOH A 106 406 200 HOH HOH . I 5 HOH A 107 407 201 HOH HOH . I 5 HOH A 108 408 208 HOH HOH . I 5 HOH A 109 409 210 HOH HOH . I 5 HOH A 110 410 216 HOH HOH . J 5 HOH B 1 301 217 HOH HOH . J 5 HOH B 2 302 131 HOH HOH . J 5 HOH B 3 303 117 HOH HOH . J 5 HOH B 4 304 10 HOH HOH . J 5 HOH B 5 305 71 HOH HOH . J 5 HOH B 6 306 81 HOH HOH . J 5 HOH B 7 307 90 HOH HOH . J 5 HOH B 8 308 12 HOH HOH . J 5 HOH B 9 309 183 HOH HOH . J 5 HOH B 10 310 35 HOH HOH . J 5 HOH B 11 311 82 HOH HOH . J 5 HOH B 12 312 213 HOH HOH . J 5 HOH B 13 313 185 HOH HOH . J 5 HOH B 14 314 3 HOH HOH . J 5 HOH B 15 315 39 HOH HOH . J 5 HOH B 16 316 150 HOH HOH . J 5 HOH B 17 317 83 HOH HOH . J 5 HOH B 18 318 209 HOH HOH . J 5 HOH B 19 319 9 HOH HOH . J 5 HOH B 20 320 99 HOH HOH . J 5 HOH B 21 321 86 HOH HOH . J 5 HOH B 22 322 66 HOH HOH . J 5 HOH B 23 323 22 HOH HOH . J 5 HOH B 24 324 111 HOH HOH . J 5 HOH B 25 325 122 HOH HOH . J 5 HOH B 26 326 120 HOH HOH . J 5 HOH B 27 327 115 HOH HOH . J 5 HOH B 28 328 48 HOH HOH . J 5 HOH B 29 329 63 HOH HOH . J 5 HOH B 30 330 103 HOH HOH . J 5 HOH B 31 331 7 HOH HOH . J 5 HOH B 32 332 140 HOH HOH . J 5 HOH B 33 333 19 HOH HOH . J 5 HOH B 34 334 72 HOH HOH . J 5 HOH B 35 335 212 HOH HOH . J 5 HOH B 36 336 102 HOH HOH . J 5 HOH B 37 337 50 HOH HOH . J 5 HOH B 38 338 16 HOH HOH . J 5 HOH B 39 339 33 HOH HOH . J 5 HOH B 40 340 37 HOH HOH . J 5 HOH B 41 341 189 HOH HOH . J 5 HOH B 42 342 214 HOH HOH . J 5 HOH B 43 343 95 HOH HOH . J 5 HOH B 44 344 57 HOH HOH . J 5 HOH B 45 345 137 HOH HOH . J 5 HOH B 46 346 121 HOH HOH . J 5 HOH B 47 347 123 HOH HOH . J 5 HOH B 48 348 105 HOH HOH . J 5 HOH B 49 349 205 HOH HOH . J 5 HOH B 50 350 128 HOH HOH . J 5 HOH B 51 351 109 HOH HOH . J 5 HOH B 52 352 73 HOH HOH . J 5 HOH B 53 353 196 HOH HOH . J 5 HOH B 54 354 145 HOH HOH . J 5 HOH B 55 355 112 HOH HOH . J 5 HOH B 56 356 169 HOH HOH . J 5 HOH B 57 357 134 HOH HOH . J 5 HOH B 58 358 164 HOH HOH . J 5 HOH B 59 359 2 HOH HOH . J 5 HOH B 60 360 11 HOH HOH . J 5 HOH B 61 361 18 HOH HOH . J 5 HOH B 62 362 23 HOH HOH . J 5 HOH B 63 363 30 HOH HOH . J 5 HOH B 64 364 36 HOH HOH . J 5 HOH B 65 365 41 HOH HOH . J 5 HOH B 66 366 47 HOH HOH . J 5 HOH B 67 367 51 HOH HOH . J 5 HOH B 68 368 52 HOH HOH . J 5 HOH B 69 369 53 HOH HOH . J 5 HOH B 70 370 54 HOH HOH . J 5 HOH B 71 371 56 HOH HOH . J 5 HOH B 72 372 58 HOH HOH . J 5 HOH B 73 373 62 HOH HOH . J 5 HOH B 74 374 67 HOH HOH . J 5 HOH B 75 375 74 HOH HOH . J 5 HOH B 76 376 75 HOH HOH . J 5 HOH B 77 377 78 HOH HOH . J 5 HOH B 78 378 88 HOH HOH . J 5 HOH B 79 379 97 HOH HOH . J 5 HOH B 80 380 98 HOH HOH . J 5 HOH B 81 381 100 HOH HOH . J 5 HOH B 82 382 108 HOH HOH . J 5 HOH B 83 383 116 HOH HOH . J 5 HOH B 84 384 119 HOH HOH . J 5 HOH B 85 385 124 HOH HOH . J 5 HOH B 86 386 129 HOH HOH . J 5 HOH B 87 387 132 HOH HOH . J 5 HOH B 88 388 135 HOH HOH . J 5 HOH B 89 389 138 HOH HOH . J 5 HOH B 90 390 139 HOH HOH . J 5 HOH B 91 391 142 HOH HOH . J 5 HOH B 92 392 143 HOH HOH . J 5 HOH B 93 393 149 HOH HOH . J 5 HOH B 94 394 156 HOH HOH . J 5 HOH B 95 395 166 HOH HOH . J 5 HOH B 96 396 173 HOH HOH . J 5 HOH B 97 397 178 HOH HOH . J 5 HOH B 98 398 180 HOH HOH . J 5 HOH B 99 399 184 HOH HOH . J 5 HOH B 100 400 188 HOH HOH . J 5 HOH B 101 401 190 HOH HOH . J 5 HOH B 102 402 193 HOH HOH . J 5 HOH B 103 403 197 HOH HOH . J 5 HOH B 104 404 203 HOH HOH . J 5 HOH B 105 405 204 HOH HOH . J 5 HOH B 106 406 206 HOH HOH . J 5 HOH B 107 407 215 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol S _atom_site.label_atom_id S2 _atom_site.label_comp_id BME _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 25.982 _atom_site.Cartn_y 8.667 _atom_site.Cartn_z -1.58 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id S2 _atom_site.auth_comp_id BME _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #