data_4X5I # _model_server_result.job_id 57o3bqacF0r6L2RA_T8PKA _model_server_result.datetime_utc '2024-11-05 00:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4X5I # _exptl.entry_id 4X5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.01 _cell.angle_gamma 90 _cell.entry_id 4X5I _cell.length_a 73.491 _cell.length_b 58.52 _cell.length_c 38.114 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.011 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 299 n n PA O2A NAP sing 300 n n PA O5B NAP sing 301 n n PA O3 NAP sing 302 n n O2A HOA2 NAP sing 303 n n O5B C5B NAP sing 304 n n C5B C4B NAP sing 305 n n C5B H51A NAP sing 306 n n C5B H52A NAP sing 307 n n C4B O4B NAP sing 308 n n C4B C3B NAP sing 309 n n C4B H4B NAP sing 310 n n O4B C1B NAP sing 311 n n C3B O3B NAP sing 312 n n C3B C2B NAP sing 313 n n C3B H3B NAP sing 314 n n O3B HO3A NAP sing 315 n n C2B O2B NAP sing 316 n n C2B C1B NAP sing 317 n n C2B H2B NAP sing 318 n n O2B P2B NAP sing 319 n n C1B N9A NAP sing 320 n n C1B H1B NAP sing 321 n n N9A C8A NAP sing 322 n y N9A C4A NAP sing 323 n y C8A N7A NAP doub 324 n y C8A H8A NAP sing 325 n n N7A C5A NAP sing 326 n y C5A C6A NAP sing 327 n y C5A C4A NAP doub 328 n y C6A N6A NAP sing 329 n n C6A N1A NAP doub 330 n y N6A H61A NAP sing 331 n n N6A H62A NAP sing 332 n n N1A C2A NAP sing 333 n y C2A N3A NAP doub 334 n y C2A H2A NAP sing 335 n n N3A C4A NAP sing 336 n y O3 PN NAP sing 337 n n PN O1N NAP doub 338 n n PN O2N NAP sing 339 n n PN O5D NAP sing 340 n n O5D C5D NAP sing 341 n n C5D C4D NAP sing 342 n n C5D H51N NAP sing 343 n n C5D H52N NAP sing 344 n n C4D O4D NAP sing 345 n n C4D C3D NAP sing 346 n n C4D H4D NAP sing 347 n n O4D C1D NAP sing 348 n n C3D O3D NAP sing 349 n n C3D C2D NAP sing 350 n n C3D H3D NAP sing 351 n n O3D HO3N NAP sing 352 n n C2D O2D NAP sing 353 n n C2D C1D NAP sing 354 n n C2D H2D NAP sing 355 n n O2D HO2N NAP sing 356 n n C1D N1N NAP sing 357 n n C1D H1D NAP sing 358 n n N1N C2N NAP sing 359 n y N1N C6N NAP doub 360 n y C2N C3N NAP doub 361 n y C2N H2N NAP sing 362 n n C3N C7N NAP sing 363 n n C3N C4N NAP sing 364 n y C7N O7N NAP doub 365 n n C7N N7N NAP sing 366 n n N7N H71N NAP sing 367 n n N7N H72N NAP sing 368 n n C4N C5N NAP doub 369 n y C4N H4N NAP sing 370 n n C5N C6N NAP sing 371 n y C5N H5N NAP sing 372 n n C6N H6N NAP sing 373 n n P2B O1X NAP doub 374 n n P2B O2X NAP sing 375 n n P2B O3X NAP sing 376 n n O2X HOP2 NAP sing 377 n n O3X HOP3 NAP sing 378 n n # _atom_sites.entry_id 4X5I _atom_sites.fract_transf_matrix[1][1] 0.013607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 160 FOL FOL . C 3 NAP A 1 202 161 NAP NAP . D 4 BME A 1 203 162 BME BME . E 5 HOH A 1 301 259 HOH HOH . E 5 HOH A 2 302 233 HOH HOH . E 5 HOH A 3 303 301 HOH HOH . E 5 HOH A 4 304 270 HOH HOH . E 5 HOH A 5 305 209 HOH HOH . E 5 HOH A 6 306 206 HOH HOH . E 5 HOH A 7 307 267 HOH HOH . E 5 HOH A 8 308 284 HOH HOH . E 5 HOH A 9 309 248 HOH HOH . E 5 HOH A 10 310 310 HOH HOH . E 5 HOH A 11 311 272 HOH HOH . E 5 HOH A 12 312 201 HOH HOH . E 5 HOH A 13 313 217 HOH HOH . E 5 HOH A 14 314 307 HOH HOH . E 5 HOH A 15 315 224 HOH HOH . E 5 HOH A 16 316 210 HOH HOH . E 5 HOH A 17 317 212 HOH HOH . E 5 HOH A 18 318 213 HOH HOH . E 5 HOH A 19 319 240 HOH HOH . E 5 HOH A 20 320 211 HOH HOH . E 5 HOH A 21 321 208 HOH HOH . E 5 HOH A 22 322 264 HOH HOH . E 5 HOH A 23 323 273 HOH HOH . E 5 HOH A 24 324 281 HOH HOH . E 5 HOH A 25 325 216 HOH HOH . E 5 HOH A 26 326 202 HOH HOH . E 5 HOH A 27 327 205 HOH HOH . E 5 HOH A 28 328 290 HOH HOH . E 5 HOH A 29 329 203 HOH HOH . E 5 HOH A 30 330 257 HOH HOH . E 5 HOH A 31 331 246 HOH HOH . E 5 HOH A 32 332 226 HOH HOH . E 5 HOH A 33 333 234 HOH HOH . E 5 HOH A 34 334 255 HOH HOH . E 5 HOH A 35 335 227 HOH HOH . E 5 HOH A 36 336 296 HOH HOH . E 5 HOH A 37 337 260 HOH HOH . E 5 HOH A 38 338 311 HOH HOH . E 5 HOH A 39 339 247 HOH HOH . E 5 HOH A 40 340 229 HOH HOH . E 5 HOH A 41 341 228 HOH HOH . E 5 HOH A 42 342 294 HOH HOH . E 5 HOH A 43 343 236 HOH HOH . E 5 HOH A 44 344 252 HOH HOH . E 5 HOH A 45 345 309 HOH HOH . E 5 HOH A 46 346 318 HOH HOH . E 5 HOH A 47 347 204 HOH HOH . E 5 HOH A 48 348 207 HOH HOH . E 5 HOH A 49 349 256 HOH HOH . E 5 HOH A 50 350 218 HOH HOH . E 5 HOH A 51 351 303 HOH HOH . E 5 HOH A 52 352 308 HOH HOH . E 5 HOH A 53 353 291 HOH HOH . E 5 HOH A 54 354 322 HOH HOH . E 5 HOH A 55 355 219 HOH HOH . E 5 HOH A 56 356 304 HOH HOH . E 5 HOH A 57 357 266 HOH HOH . E 5 HOH A 58 358 286 HOH HOH . E 5 HOH A 59 359 268 HOH HOH . E 5 HOH A 60 360 305 HOH HOH . E 5 HOH A 61 361 269 HOH HOH . E 5 HOH A 62 362 300 HOH HOH . E 5 HOH A 63 363 321 HOH HOH . E 5 HOH A 64 364 314 HOH HOH . E 5 HOH A 65 365 289 HOH HOH . E 5 HOH A 66 509 408 HOH HOH . E 5 HOH A 67 367 283 HOH HOH . E 5 HOH A 68 368 317 HOH HOH . E 5 HOH A 69 369 324 HOH HOH . E 5 HOH A 70 370 200 HOH HOH . E 5 HOH A 71 371 214 HOH HOH . E 5 HOH A 72 372 215 HOH HOH . E 5 HOH A 73 373 220 HOH HOH . E 5 HOH A 74 374 221 HOH HOH . E 5 HOH A 75 375 222 HOH HOH . E 5 HOH A 76 376 223 HOH HOH . E 5 HOH A 77 377 225 HOH HOH . E 5 HOH A 78 378 230 HOH HOH . E 5 HOH A 79 379 231 HOH HOH . E 5 HOH A 80 380 232 HOH HOH . E 5 HOH A 81 381 235 HOH HOH . E 5 HOH A 82 382 237 HOH HOH . E 5 HOH A 83 383 238 HOH HOH . E 5 HOH A 84 384 239 HOH HOH . E 5 HOH A 85 385 241 HOH HOH . E 5 HOH A 86 386 242 HOH HOH . E 5 HOH A 87 387 243 HOH HOH . E 5 HOH A 88 388 244 HOH HOH . E 5 HOH A 89 389 245 HOH HOH . E 5 HOH A 90 390 249 HOH HOH . E 5 HOH A 91 391 250 HOH HOH . E 5 HOH A 92 392 251 HOH HOH . E 5 HOH A 93 393 253 HOH HOH . E 5 HOH A 94 394 254 HOH HOH . E 5 HOH A 95 395 258 HOH HOH . E 5 HOH A 96 396 261 HOH HOH . E 5 HOH A 97 397 262 HOH HOH . E 5 HOH A 98 398 263 HOH HOH . E 5 HOH A 99 399 265 HOH HOH . E 5 HOH A 100 400 271 HOH HOH . E 5 HOH A 101 401 274 HOH HOH . E 5 HOH A 102 402 275 HOH HOH . E 5 HOH A 103 403 276 HOH HOH . E 5 HOH A 104 404 277 HOH HOH . E 5 HOH A 105 405 278 HOH HOH . E 5 HOH A 106 406 279 HOH HOH . E 5 HOH A 107 407 280 HOH HOH . E 5 HOH A 108 408 282 HOH HOH . E 5 HOH A 109 409 285 HOH HOH . E 5 HOH A 110 410 287 HOH HOH . E 5 HOH A 111 411 288 HOH HOH . E 5 HOH A 112 412 292 HOH HOH . E 5 HOH A 113 413 293 HOH HOH . E 5 HOH A 114 414 295 HOH HOH . E 5 HOH A 115 415 297 HOH HOH . E 5 HOH A 116 416 298 HOH HOH . E 5 HOH A 117 417 299 HOH HOH . E 5 HOH A 118 418 302 HOH HOH . E 5 HOH A 119 419 306 HOH HOH . E 5 HOH A 120 420 312 HOH HOH . E 5 HOH A 121 421 313 HOH HOH . E 5 HOH A 122 422 315 HOH HOH . E 5 HOH A 123 423 316 HOH HOH . E 5 HOH A 124 424 319 HOH HOH . E 5 HOH A 125 425 320 HOH HOH . E 5 HOH A 126 426 323 HOH HOH . E 5 HOH A 127 427 325 HOH HOH . E 5 HOH A 128 501 400 HOH HOH . E 5 HOH A 129 502 401 HOH HOH . E 5 HOH A 130 503 402 HOH HOH . E 5 HOH A 131 504 403 HOH HOH . E 5 HOH A 132 505 404 HOH HOH . E 5 HOH A 133 506 405 HOH HOH . E 5 HOH A 134 507 406 HOH HOH . E 5 HOH A 135 508 407 HOH HOH . E 5 HOH A 136 510 409 HOH HOH . E 5 HOH A 137 511 410 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.777 19.465 2.461 1 16.16 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . C 3 18.345 18.402 3.343 1 18.36 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . C 3 16.476 20.025 2.557 1 16.84 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . C 3 18.102 18.765 1.023 1 15.27 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . C 3 17.594 19.468 -0.127 1 14.98 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . C 3 17.583 18.531 -1.327 1 16.12 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . C 3 16.558 17.598 -1.041 1 15.96 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . C 3 17.11 19.111 -2.647 1 16.16 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . C 3 18.251 19.701 -3.269 1 15.69 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . C 3 16.51 17.919 -3.392 1 15.82 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . C 3 17.578 17.019 -3.797 1 14.32 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . C 3 15.773 17.312 -2.197 1 15.76 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . C 3 14.421 17.78 -2.036 1 16.56 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . C 3 13.889 18.559 -1.049 1 17.66 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . C 3 12.585 18.716 -1.284 1 16.5 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . C 3 12.267 17.993 -2.386 1 17.8 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . C 3 11.103 17.733 -3.201 1 19.92 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . C 3 9.91 18.217 -2.865 1 21.09 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . C 3 11.232 16.872 -4.248 1 20.6 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . C 3 12.399 16.37 -4.658 1 18.3 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . C 3 13.515 16.592 -3.98 1 17.5 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . C 3 13.489 17.372 -2.865 1 16.41 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . C 3 18.898 20.657 2.257 1 18.08 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . C 3 18.956 22.143 2.937 1 20.45 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . C 3 19.305 21.856 4.337 1 18.54 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . C 3 17.806 22.993 2.459 1 20.54 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . C 3 20.233 22.695 2.112 1 28.67 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . C 3 21.551 22.624 2.658 1 42.45 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . C 3 22.564 23.293 1.716 1 51.64 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . C 3 22.06 23.462 0.359 1 66.2 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . C 3 22.962 24.67 2.256 1 61.25 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . C 3 24.373 24.768 2.568 1 61.33 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . C 3 22.465 25.64 1.191 1 68.82 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . C 3 23.245 26.835 1.019 1 64.62 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . C 3 22.321 24.819 -0.097 1 77.82 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . C 3 21.271 25.543 -0.856 1 90.97 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . C 3 21.555 26.812 -1.232 1 97.44 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . C 3 20.643 27.608 -1.915 1 102.86 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . C 3 21.073 29.008 -2.302 1 103.38 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . C 3 21.216 29.879 -1.455 1 96.13 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . C 3 21.319 29.282 -3.579 1 106.23 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . C 3 19.387 27.07 -2.219 1 101.13 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . C 3 19.095 25.762 -1.816 1 99.7 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . C 3 20.061 25.015 -1.124 1 97.36 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . C 3 18.204 17.075 -5.288 1 15.54 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . C 3 16.997 17.325 -6.1 1 14.67 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . C 3 18.78 15.679 -5.383 1 18.12 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . C 3 19.114 18.285 -5.052 1 17.16 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #