data_4X5I # _model_server_result.job_id UZ4lH4qtDDw6ctJdNA2QOg _model_server_result.datetime_utc '2024-11-05 00:31:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4X5I # _exptl.entry_id 4X5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.01 _cell.angle_gamma 90 _cell.entry_id 4X5I _cell.length_a 73.491 _cell.length_b 58.52 _cell.length_c 38.114 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.011 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 4X5I _atom_sites.fract_transf_matrix[1][1] 0.013607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 160 FOL FOL . C 3 NAP A 1 202 161 NAP NAP . D 4 BME A 1 203 162 BME BME . E 5 HOH A 1 301 259 HOH HOH . E 5 HOH A 2 302 233 HOH HOH . E 5 HOH A 3 303 301 HOH HOH . E 5 HOH A 4 304 270 HOH HOH . E 5 HOH A 5 305 209 HOH HOH . E 5 HOH A 6 306 206 HOH HOH . E 5 HOH A 7 307 267 HOH HOH . E 5 HOH A 8 308 284 HOH HOH . E 5 HOH A 9 309 248 HOH HOH . E 5 HOH A 10 310 310 HOH HOH . E 5 HOH A 11 311 272 HOH HOH . E 5 HOH A 12 312 201 HOH HOH . E 5 HOH A 13 313 217 HOH HOH . E 5 HOH A 14 314 307 HOH HOH . E 5 HOH A 15 315 224 HOH HOH . E 5 HOH A 16 316 210 HOH HOH . E 5 HOH A 17 317 212 HOH HOH . E 5 HOH A 18 318 213 HOH HOH . E 5 HOH A 19 319 240 HOH HOH . E 5 HOH A 20 320 211 HOH HOH . E 5 HOH A 21 321 208 HOH HOH . E 5 HOH A 22 322 264 HOH HOH . E 5 HOH A 23 323 273 HOH HOH . E 5 HOH A 24 324 281 HOH HOH . E 5 HOH A 25 325 216 HOH HOH . E 5 HOH A 26 326 202 HOH HOH . E 5 HOH A 27 327 205 HOH HOH . E 5 HOH A 28 328 290 HOH HOH . E 5 HOH A 29 329 203 HOH HOH . E 5 HOH A 30 330 257 HOH HOH . E 5 HOH A 31 331 246 HOH HOH . E 5 HOH A 32 332 226 HOH HOH . E 5 HOH A 33 333 234 HOH HOH . E 5 HOH A 34 334 255 HOH HOH . E 5 HOH A 35 335 227 HOH HOH . E 5 HOH A 36 336 296 HOH HOH . E 5 HOH A 37 337 260 HOH HOH . E 5 HOH A 38 338 311 HOH HOH . E 5 HOH A 39 339 247 HOH HOH . E 5 HOH A 40 340 229 HOH HOH . E 5 HOH A 41 341 228 HOH HOH . E 5 HOH A 42 342 294 HOH HOH . E 5 HOH A 43 343 236 HOH HOH . E 5 HOH A 44 344 252 HOH HOH . E 5 HOH A 45 345 309 HOH HOH . E 5 HOH A 46 346 318 HOH HOH . E 5 HOH A 47 347 204 HOH HOH . E 5 HOH A 48 348 207 HOH HOH . E 5 HOH A 49 349 256 HOH HOH . E 5 HOH A 50 350 218 HOH HOH . E 5 HOH A 51 351 303 HOH HOH . E 5 HOH A 52 352 308 HOH HOH . E 5 HOH A 53 353 291 HOH HOH . E 5 HOH A 54 354 322 HOH HOH . E 5 HOH A 55 355 219 HOH HOH . E 5 HOH A 56 356 304 HOH HOH . E 5 HOH A 57 357 266 HOH HOH . E 5 HOH A 58 358 286 HOH HOH . E 5 HOH A 59 359 268 HOH HOH . E 5 HOH A 60 360 305 HOH HOH . E 5 HOH A 61 361 269 HOH HOH . E 5 HOH A 62 362 300 HOH HOH . E 5 HOH A 63 363 321 HOH HOH . E 5 HOH A 64 364 314 HOH HOH . E 5 HOH A 65 365 289 HOH HOH . E 5 HOH A 66 509 408 HOH HOH . E 5 HOH A 67 367 283 HOH HOH . E 5 HOH A 68 368 317 HOH HOH . E 5 HOH A 69 369 324 HOH HOH . E 5 HOH A 70 370 200 HOH HOH . E 5 HOH A 71 371 214 HOH HOH . E 5 HOH A 72 372 215 HOH HOH . E 5 HOH A 73 373 220 HOH HOH . E 5 HOH A 74 374 221 HOH HOH . E 5 HOH A 75 375 222 HOH HOH . E 5 HOH A 76 376 223 HOH HOH . E 5 HOH A 77 377 225 HOH HOH . E 5 HOH A 78 378 230 HOH HOH . E 5 HOH A 79 379 231 HOH HOH . E 5 HOH A 80 380 232 HOH HOH . E 5 HOH A 81 381 235 HOH HOH . E 5 HOH A 82 382 237 HOH HOH . E 5 HOH A 83 383 238 HOH HOH . E 5 HOH A 84 384 239 HOH HOH . E 5 HOH A 85 385 241 HOH HOH . E 5 HOH A 86 386 242 HOH HOH . E 5 HOH A 87 387 243 HOH HOH . E 5 HOH A 88 388 244 HOH HOH . E 5 HOH A 89 389 245 HOH HOH . E 5 HOH A 90 390 249 HOH HOH . E 5 HOH A 91 391 250 HOH HOH . E 5 HOH A 92 392 251 HOH HOH . E 5 HOH A 93 393 253 HOH HOH . E 5 HOH A 94 394 254 HOH HOH . E 5 HOH A 95 395 258 HOH HOH . E 5 HOH A 96 396 261 HOH HOH . E 5 HOH A 97 397 262 HOH HOH . E 5 HOH A 98 398 263 HOH HOH . E 5 HOH A 99 399 265 HOH HOH . E 5 HOH A 100 400 271 HOH HOH . E 5 HOH A 101 401 274 HOH HOH . E 5 HOH A 102 402 275 HOH HOH . E 5 HOH A 103 403 276 HOH HOH . E 5 HOH A 104 404 277 HOH HOH . E 5 HOH A 105 405 278 HOH HOH . E 5 HOH A 106 406 279 HOH HOH . E 5 HOH A 107 407 280 HOH HOH . E 5 HOH A 108 408 282 HOH HOH . E 5 HOH A 109 409 285 HOH HOH . E 5 HOH A 110 410 287 HOH HOH . E 5 HOH A 111 411 288 HOH HOH . E 5 HOH A 112 412 292 HOH HOH . E 5 HOH A 113 413 293 HOH HOH . E 5 HOH A 114 414 295 HOH HOH . E 5 HOH A 115 415 297 HOH HOH . E 5 HOH A 116 416 298 HOH HOH . E 5 HOH A 117 417 299 HOH HOH . E 5 HOH A 118 418 302 HOH HOH . E 5 HOH A 119 419 306 HOH HOH . E 5 HOH A 120 420 312 HOH HOH . E 5 HOH A 121 421 313 HOH HOH . E 5 HOH A 122 422 315 HOH HOH . E 5 HOH A 123 423 316 HOH HOH . E 5 HOH A 124 424 319 HOH HOH . E 5 HOH A 125 425 320 HOH HOH . E 5 HOH A 126 426 323 HOH HOH . E 5 HOH A 127 427 325 HOH HOH . E 5 HOH A 128 501 400 HOH HOH . E 5 HOH A 129 502 401 HOH HOH . E 5 HOH A 130 503 402 HOH HOH . E 5 HOH A 131 504 403 HOH HOH . E 5 HOH A 132 505 404 HOH HOH . E 5 HOH A 133 506 405 HOH HOH . E 5 HOH A 134 507 406 HOH HOH . E 5 HOH A 135 508 407 HOH HOH . E 5 HOH A 136 510 409 HOH HOH . E 5 HOH A 137 511 410 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol S _atom_site.label_atom_id S2 _atom_site.label_comp_id BME _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.457 _atom_site.Cartn_y 25.43 _atom_site.Cartn_z 24.913 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id S2 _atom_site.auth_comp_id BME _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #