data_4X5K # _model_server_result.job_id gZBvIjaMNPlNcvKq7aO2Zw _model_server_result.datetime_utc '2024-10-19 00:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4X5K # _exptl.entry_id 4X5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X5K _cell.length_a 44.626 _cell.length_b 53.193 _cell.length_c 67.586 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id MET _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MET _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.459 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 76 n y N1A C6A COA doub 77 n y C2A N3A COA doub 78 n y C2A H2A COA sing 79 n n N3A C4A COA sing 80 n y C4A C5A COA doub 81 n y C4A N9A COA sing 82 n y C5A C6A COA sing 83 n y C5A N7A COA sing 84 n y C6A N6A COA sing 85 n n N6A H61A COA sing 86 n n N6A H62A COA sing 87 n n N7A C8A COA doub 88 n y C8A N9A COA sing 89 n y C8A H8A COA sing 90 n n N9A C1B COA sing 91 n n C1B C2B COA sing 92 n n C1B O4B COA sing 93 n n C1B H1B COA sing 94 n n C2B O2B COA sing 95 n n C2B C3B COA sing 96 n n C2B H2B COA sing 97 n n O2B HO2A COA sing 98 n n C3B O3B COA sing 99 n n C3B C4B COA sing 100 n n C3B H3B COA sing 101 n n O3B P3B COA sing 102 n n P3B O7A COA doub 103 n n P3B O8A COA sing 104 n n P3B O9A COA sing 105 n n O8A HOA8 COA sing 106 n n O9A HOA9 COA sing 107 n n C4B O4B COA sing 108 n n C4B C5B COA sing 109 n n C4B H4B COA sing 110 n n C5B O5B COA sing 111 n n C5B H51A COA sing 112 n n C5B H52A COA sing 113 n n O5B P1A COA sing 114 n n P1A O1A COA doub 115 n n P1A O2A COA sing 116 n n P1A O3A COA sing 117 n n O2A HOA2 COA sing 118 n n O3A P2A COA sing 119 n n P2A O4A COA doub 120 n n P2A O5A COA sing 121 n n P2A O6A COA sing 122 n n O5A HOA5 COA sing 123 n n O6A CCP COA sing 124 n n CBP CCP COA sing 125 n n CBP CDP COA sing 126 n n CBP CEP COA sing 127 n n CBP CAP COA sing 128 n n CCP H121 COA sing 129 n n CCP H122 COA sing 130 n n CDP H131 COA sing 131 n n CDP H132 COA sing 132 n n CDP H133 COA sing 133 n n CEP H141 COA sing 134 n n CEP H142 COA sing 135 n n CEP H143 COA sing 136 n n CAP OAP COA sing 137 n n CAP C9P COA sing 138 n n CAP H10 COA sing 139 n n OAP HO1 COA sing 140 n n C9P O9P COA doub 141 n n C9P N8P COA sing 142 n n N8P C7P COA sing 143 n n N8P HN8 COA sing 144 n n C7P C6P COA sing 145 n n C7P H71 COA sing 146 n n C7P H72 COA sing 147 n n C6P C5P COA sing 148 n n C6P H61 COA sing 149 n n C6P H62 COA sing 150 n n C5P O5P COA doub 151 n n C5P N4P COA sing 152 n n N4P C3P COA sing 153 n n N4P HN4 COA sing 154 n n C3P C2P COA sing 155 n n C3P H31 COA sing 156 n n C3P H32 COA sing 157 n n C2P S1P COA sing 158 n n C2P H21 COA sing 159 n n C2P H22 COA sing 160 n n S1P HS1 COA sing 161 n n # _atom_sites.entry_id 4X5K _atom_sites.fract_transf_matrix[1][1] 0.022408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 201 156 COA COA . D 4 HOH A 1 301 12 HOH HOH . D 4 HOH A 2 302 11 HOH HOH . D 4 HOH A 3 303 10 HOH HOH . D 4 HOH A 4 304 9 HOH HOH . D 4 HOH A 5 305 1 HOH HOH . D 4 HOH A 6 306 2 HOH HOH . D 4 HOH A 7 307 13 HOH HOH . D 4 HOH A 8 308 6 HOH HOH . D 4 HOH A 9 309 16 HOH HOH . D 4 HOH A 10 310 8 HOH HOH . D 4 HOH A 11 311 15 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 4 HOH HOH . D 4 HOH A 14 314 7 HOH HOH . D 4 HOH A 15 315 3 HOH HOH . D 4 HOH A 16 316 5 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 -1.28 13.357 9.103 1 80.77 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . C 3 -0.054 13.227 9.672 1 78.14 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . C 3 0.383 11.99 10.036 1 75.48 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . C 3 -0.231 10.886 9.511 1 75.7 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . C 3 -1.514 11.023 8.9 1 76.51 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . C 3 -2.096 12.293 8.878 1 76.06 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . C 3 -3.487 12.368 9.265 1 72.39 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . C 3 -1.898 9.812 8.474 1 69.15 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . C 3 -0.939 8.933 8.767 1 72.24 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . C 3 0.097 9.538 9.393 1 74.23 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . C 3 1.298 8.908 9.883 1 76.34 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . C 3 1.409 9.156 11.428 1 74.86 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . C 3 2.676 9.683 12.007 1 66.66 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . C 3 0.727 7.899 12.005 1 73.74 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . C 3 1.163 7.43 13.198 1 76.75 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . C 3 0.305 7.693 14.498 1 91.53 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . C 3 1.019 7.104 15.704 1 92.46 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . C 3 0.194 9.205 14.666 1 90.79 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . C 3 -1.094 7.07 14.397 1 77.95 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . C 3 0.863 6.91 10.899 1 69.91 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . C 3 1.35 7.516 9.691 1 72.01 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . C 3 -0.509 6.306 10.703 1 71.31 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . C 3 -0.467 5.225 9.812 1 68.06 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . C 3 -1.841 4.481 9.616 1 61.69 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . C 3 -2.607 4.49 10.938 1 61.91 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . C 3 -1.552 3.057 9.162 1 62.15 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . C 3 -2.581 5.303 8.463 1 67.1 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . C 3 -4.089 5.113 7.994 1 61.7 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . C 3 -4.548 3.672 8.234 1 60.47 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . C 3 -4.951 6.105 8.769 1 56.89 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . C 3 -4.163 5.406 6.435 1 61.53 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . C 3 -4.136 6.889 4.635 1 56.27 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . C 3 -3.328 6.343 5.8 1 55.85 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . C 3 -3.556 8.166 4.104 1 54.25 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . C 3 -4.165 5.856 3.539 1 54.84 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . C 3 -5.553 7.128 5.156 1 58.01 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . C 3 -5.632 8.31 5.883 1 56.07 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . C 3 -6.626 7.15 4.087 1 54.37 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . C 3 -7.261 6.139 3.843 1 55.2 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . C 3 -6.926 8.388 3.371 1 56.77 ? N8P COA 201 A 1 HETATM 41 C C7P COA . . . C 3 -7.973 8.395 2.365 1 55.27 ? C7P COA 201 A 1 HETATM 42 C C6P COA . . . C 3 -7.498 7.573 1.172 1 61.25 ? C6P COA 201 A 1 HETATM 43 C C5P COA . . . C 3 -6.577 8.39 0.265 1 61.68 ? C5P COA 201 A 1 HETATM 44 O O5P COA . . . C 3 -6.732 9.608 0.136 1 66.93 ? O5P COA 201 A 1 HETATM 45 N N4P COA . . . C 3 -5.513 7.693 -0.465 1 63.79 ? N4P COA 201 A 1 HETATM 46 C C3P COA . . . C 3 -4.647 8.478 -1.34 1 66.58 ? C3P COA 201 A 1 HETATM 47 C C2P COA . . . C 3 -3.211 8.123 -1.076 1 65.62 ? C2P COA 201 A 1 HETATM 48 S S1P COA . . . C 3 -3.08 6.6 -0.185 0 60.68 ? S1P COA 201 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #