data_4X5L # _model_server_result.job_id SuJ893CZsA8aWYsp_ajYqQ _model_server_result.datetime_utc '2024-10-28 14:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 4X5L # _exptl.entry_id 4X5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X5L _cell.length_a 45.527 _cell.length_b 117.37 _cell.length_c 117.333 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 16 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1,2 B,E,H 2 1,3 C,I 3 1,2 D,F,J 4 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_875 -x+3,-y+2,z -1 0 0 0 -1 0 0 0 1 136.581 234.74 0 3 'crystal symmetry operation' 3_855 -x+3,y,-z -1 0 0 0 1 0 0 0 -1 136.581 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 25 1_555 A SG CYS 84 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 30 B CYS 25 1_555 B SG CYS 84 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 30 C CYS 25 1_555 C SG CYS 84 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 30 D CYS 25 1_555 D SG CYS 84 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B OG1 THR 87 B THR 82 1_555 E NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc2 D O GLN 9 D GLN 4 1_555 F NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 D O VAL 31 D VAL 26 1_555 F NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X5L _atom_sites.fract_transf_matrix[1][1] 0.021965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA B 1 101 111 NA NA . F 2 NA D 1 101 110 NA NA . G 3 HOH A 1 101 45 HOH HOH . G 3 HOH A 2 102 95 HOH HOH . G 3 HOH A 3 103 1 HOH HOH . G 3 HOH A 4 104 99 HOH HOH . G 3 HOH A 5 105 64 HOH HOH . G 3 HOH A 6 106 70 HOH HOH . G 3 HOH A 7 107 30 HOH HOH . G 3 HOH A 8 108 2 HOH HOH . G 3 HOH A 9 109 14 HOH HOH . G 3 HOH A 10 110 38 HOH HOH . G 3 HOH A 11 111 47 HOH HOH . G 3 HOH A 12 112 50 HOH HOH . G 3 HOH A 13 113 56 HOH HOH . G 3 HOH A 14 114 57 HOH HOH . G 3 HOH A 15 115 63 HOH HOH . G 3 HOH A 16 116 67 HOH HOH . G 3 HOH A 17 117 76 HOH HOH . G 3 HOH A 18 118 79 HOH HOH . G 3 HOH A 19 119 80 HOH HOH . G 3 HOH A 20 120 86 HOH HOH . G 3 HOH A 21 121 94 HOH HOH . G 3 HOH A 22 122 107 HOH HOH . H 3 HOH B 1 201 44 HOH HOH . H 3 HOH B 2 202 101 HOH HOH . H 3 HOH B 3 203 105 HOH HOH . H 3 HOH B 4 204 69 HOH HOH . H 3 HOH B 5 205 16 HOH HOH . H 3 HOH B 6 206 92 HOH HOH . H 3 HOH B 7 207 48 HOH HOH . H 3 HOH B 8 208 54 HOH HOH . H 3 HOH B 9 209 3 HOH HOH . H 3 HOH B 10 210 7 HOH HOH . H 3 HOH B 11 211 12 HOH HOH . H 3 HOH B 12 212 13 HOH HOH . H 3 HOH B 13 213 33 HOH HOH . H 3 HOH B 14 214 34 HOH HOH . H 3 HOH B 15 215 39 HOH HOH . H 3 HOH B 16 216 43 HOH HOH . H 3 HOH B 17 217 66 HOH HOH . H 3 HOH B 18 218 78 HOH HOH . H 3 HOH B 19 219 102 HOH HOH . I 3 HOH C 1 101 68 HOH HOH . I 3 HOH C 2 102 9 HOH HOH . I 3 HOH C 3 103 29 HOH HOH . I 3 HOH C 4 104 77 HOH HOH . I 3 HOH C 5 105 22 HOH HOH . I 3 HOH C 6 106 4 HOH HOH . I 3 HOH C 7 107 65 HOH HOH . I 3 HOH C 8 108 11 HOH HOH . I 3 HOH C 9 109 18 HOH HOH . I 3 HOH C 10 110 31 HOH HOH . I 3 HOH C 11 111 97 HOH HOH . I 3 HOH C 12 112 6 HOH HOH . I 3 HOH C 13 113 8 HOH HOH . I 3 HOH C 14 114 10 HOH HOH . I 3 HOH C 15 115 19 HOH HOH . I 3 HOH C 16 116 23 HOH HOH . I 3 HOH C 17 117 32 HOH HOH . I 3 HOH C 18 118 35 HOH HOH . I 3 HOH C 19 119 36 HOH HOH . I 3 HOH C 20 120 40 HOH HOH . I 3 HOH C 21 121 41 HOH HOH . I 3 HOH C 22 122 46 HOH HOH . I 3 HOH C 23 123 49 HOH HOH . I 3 HOH C 24 124 52 HOH HOH . I 3 HOH C 25 125 59 HOH HOH . I 3 HOH C 26 126 71 HOH HOH . I 3 HOH C 27 127 73 HOH HOH . I 3 HOH C 28 128 75 HOH HOH . I 3 HOH C 29 129 81 HOH HOH . I 3 HOH C 30 130 85 HOH HOH . I 3 HOH C 31 131 87 HOH HOH . I 3 HOH C 32 132 89 HOH HOH . I 3 HOH C 33 133 98 HOH HOH . I 3 HOH C 34 134 103 HOH HOH . I 3 HOH C 35 135 106 HOH HOH . I 3 HOH C 36 136 109 HOH HOH . J 3 HOH D 1 201 25 HOH HOH . J 3 HOH D 2 202 21 HOH HOH . J 3 HOH D 3 203 42 HOH HOH . J 3 HOH D 4 204 26 HOH HOH . J 3 HOH D 5 205 62 HOH HOH . J 3 HOH D 6 206 51 HOH HOH . J 3 HOH D 7 207 55 HOH HOH . J 3 HOH D 8 208 27 HOH HOH . J 3 HOH D 9 209 72 HOH HOH . J 3 HOH D 10 210 100 HOH HOH . J 3 HOH D 11 211 5 HOH HOH . J 3 HOH D 12 212 15 HOH HOH . J 3 HOH D 13 213 17 HOH HOH . J 3 HOH D 14 214 20 HOH HOH . J 3 HOH D 15 215 24 HOH HOH . J 3 HOH D 16 216 37 HOH HOH . J 3 HOH D 17 217 53 HOH HOH . J 3 HOH D 18 218 60 HOH HOH . J 3 HOH D 19 219 74 HOH HOH . J 3 HOH D 20 220 83 HOH HOH . J 3 HOH D 21 221 84 HOH HOH . J 3 HOH D 22 222 88 HOH HOH . J 3 HOH D 23 223 90 HOH HOH . J 3 HOH D 24 224 91 HOH HOH . J 3 HOH D 25 225 104 HOH HOH . J 3 HOH D 26 226 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 89.649 _atom_site.Cartn_y 142.873 _atom_site.Cartn_z 0.592 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #