data_4X5Y # _model_server_result.job_id UugxfY-FEbn-jWXVskjvDA _model_server_result.datetime_utc '2024-11-30 08:58:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4X5Y # _exptl.entry_id 4X5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X5Y _cell.length_a 48.378 _cell.length_b 79.732 _cell.length_c 124.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 155 n n S C1 DMS sing 156 n n S C2 DMS sing 157 n n C1 H11 DMS sing 158 n n C1 H12 DMS sing 159 n n C1 H13 DMS sing 160 n n C2 H21 DMS sing 161 n n C2 H22 DMS sing 162 n n C2 H23 DMS sing 163 n n # _atom_sites.entry_id 4X5Y _atom_sites.fract_transf_matrix[1][1] 0.020671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3XW A 1 601 1 3XW DRG . C 3 DMS A 1 602 1 DMS DMS . D 4 PG4 A 1 603 1 PG4 PGD . E 5 SO4 A 1 604 1 SO4 SO4 . F 5 SO4 A 1 605 2 SO4 SO4 . G 5 SO4 A 1 606 3 SO4 SO4 . H 3 DMS A 1 607 1 DMS DMS . I 3 DMS A 1 608 1 DMS DMS . J 6 EDO A 1 609 1 EDO PGA . K 7 EPE A 1 610 1 EPE EPE . L 8 HOH A 1 701 127 HOH HOH . L 8 HOH A 2 702 242 HOH HOH . L 8 HOH A 3 703 284 HOH HOH . L 8 HOH A 4 704 31 HOH HOH . L 8 HOH A 5 705 163 HOH HOH . L 8 HOH A 6 706 148 HOH HOH . L 8 HOH A 7 707 207 HOH HOH . L 8 HOH A 8 708 177 HOH HOH . L 8 HOH A 9 709 141 HOH HOH . L 8 HOH A 10 710 268 HOH HOH . L 8 HOH A 11 711 32 HOH HOH . L 8 HOH A 12 712 172 HOH HOH . L 8 HOH A 13 713 119 HOH HOH . L 8 HOH A 14 714 84 HOH HOH . L 8 HOH A 15 715 226 HOH HOH . L 8 HOH A 16 716 316 HOH HOH . L 8 HOH A 17 717 184 HOH HOH . L 8 HOH A 18 718 267 HOH HOH . L 8 HOH A 19 719 221 HOH HOH . L 8 HOH A 20 720 79 HOH HOH . L 8 HOH A 21 721 145 HOH HOH . L 8 HOH A 22 722 304 HOH HOH . L 8 HOH A 23 723 15 HOH HOH . L 8 HOH A 24 724 96 HOH HOH . L 8 HOH A 25 725 29 HOH HOH . L 8 HOH A 26 726 229 HOH HOH . L 8 HOH A 27 727 46 HOH HOH . L 8 HOH A 28 728 139 HOH HOH . L 8 HOH A 29 729 100 HOH HOH . L 8 HOH A 30 730 133 HOH HOH . L 8 HOH A 31 731 314 HOH HOH . L 8 HOH A 32 732 249 HOH HOH . L 8 HOH A 33 733 190 HOH HOH . L 8 HOH A 34 734 306 HOH HOH . L 8 HOH A 35 735 202 HOH HOH . L 8 HOH A 36 736 40 HOH HOH . L 8 HOH A 37 737 55 HOH HOH . L 8 HOH A 38 738 2 HOH HOH . L 8 HOH A 39 739 13 HOH HOH . L 8 HOH A 40 740 26 HOH HOH . L 8 HOH A 41 741 86 HOH HOH . L 8 HOH A 42 742 312 HOH HOH . L 8 HOH A 43 743 117 HOH HOH . L 8 HOH A 44 744 287 HOH HOH . L 8 HOH A 45 745 294 HOH HOH . L 8 HOH A 46 746 208 HOH HOH . L 8 HOH A 47 747 276 HOH HOH . L 8 HOH A 48 748 41 HOH HOH . L 8 HOH A 49 749 245 HOH HOH . L 8 HOH A 50 750 115 HOH HOH . L 8 HOH A 51 751 293 HOH HOH . L 8 HOH A 52 752 158 HOH HOH . L 8 HOH A 53 753 260 HOH HOH . L 8 HOH A 54 754 81 HOH HOH . L 8 HOH A 55 755 236 HOH HOH . L 8 HOH A 56 756 183 HOH HOH . L 8 HOH A 57 757 44 HOH HOH . L 8 HOH A 58 758 295 HOH HOH . L 8 HOH A 59 759 60 HOH HOH . L 8 HOH A 60 760 182 HOH HOH . L 8 HOH A 61 761 49 HOH HOH . L 8 HOH A 62 762 140 HOH HOH . L 8 HOH A 63 763 297 HOH HOH . L 8 HOH A 64 764 298 HOH HOH . L 8 HOH A 65 765 288 HOH HOH . L 8 HOH A 66 766 191 HOH HOH . L 8 HOH A 67 767 325 HOH HOH . L 8 HOH A 68 768 318 HOH HOH . L 8 HOH A 69 769 283 HOH HOH . L 8 HOH A 70 770 261 HOH HOH . L 8 HOH A 71 771 59 HOH HOH . L 8 HOH A 72 772 315 HOH HOH . L 8 HOH A 73 773 310 HOH HOH . L 8 HOH A 74 774 34 HOH HOH . L 8 HOH A 75 775 132 HOH HOH . L 8 HOH A 76 776 320 HOH HOH . L 8 HOH A 77 777 209 HOH HOH . L 8 HOH A 78 778 1 HOH HOH . L 8 HOH A 79 779 3 HOH HOH . L 8 HOH A 80 780 4 HOH HOH . L 8 HOH A 81 781 5 HOH HOH . L 8 HOH A 82 782 6 HOH HOH . L 8 HOH A 83 783 7 HOH HOH . L 8 HOH A 84 784 8 HOH HOH . L 8 HOH A 85 785 9 HOH HOH . L 8 HOH A 86 786 10 HOH HOH . L 8 HOH A 87 787 11 HOH HOH . L 8 HOH A 88 788 12 HOH HOH . L 8 HOH A 89 789 14 HOH HOH . L 8 HOH A 90 790 16 HOH HOH . L 8 HOH A 91 791 17 HOH HOH . L 8 HOH A 92 792 18 HOH HOH . L 8 HOH A 93 793 19 HOH HOH . L 8 HOH A 94 794 20 HOH HOH . L 8 HOH A 95 795 21 HOH HOH . L 8 HOH A 96 796 22 HOH HOH . L 8 HOH A 97 797 23 HOH HOH . L 8 HOH A 98 798 24 HOH HOH . L 8 HOH A 99 799 25 HOH HOH . L 8 HOH A 100 800 27 HOH HOH . L 8 HOH A 101 801 28 HOH HOH . L 8 HOH A 102 802 30 HOH HOH . L 8 HOH A 103 803 33 HOH HOH . L 8 HOH A 104 804 35 HOH HOH . L 8 HOH A 105 805 36 HOH HOH . L 8 HOH A 106 806 37 HOH HOH . L 8 HOH A 107 807 38 HOH HOH . L 8 HOH A 108 808 39 HOH HOH . L 8 HOH A 109 809 42 HOH HOH . L 8 HOH A 110 810 43 HOH HOH . L 8 HOH A 111 811 45 HOH HOH . L 8 HOH A 112 812 47 HOH HOH . L 8 HOH A 113 813 48 HOH HOH . L 8 HOH A 114 814 50 HOH HOH . L 8 HOH A 115 815 51 HOH HOH . L 8 HOH A 116 816 52 HOH HOH . L 8 HOH A 117 817 53 HOH HOH . L 8 HOH A 118 818 54 HOH HOH . L 8 HOH A 119 819 56 HOH HOH . L 8 HOH A 120 820 57 HOH HOH . L 8 HOH A 121 821 58 HOH HOH . L 8 HOH A 122 822 61 HOH HOH . L 8 HOH A 123 823 62 HOH HOH . L 8 HOH A 124 824 63 HOH HOH . L 8 HOH A 125 825 64 HOH HOH . L 8 HOH A 126 826 65 HOH HOH . L 8 HOH A 127 827 66 HOH HOH . L 8 HOH A 128 828 67 HOH HOH . L 8 HOH A 129 829 68 HOH HOH . L 8 HOH A 130 830 69 HOH HOH . L 8 HOH A 131 831 70 HOH HOH . L 8 HOH A 132 832 71 HOH HOH . L 8 HOH A 133 833 72 HOH HOH . L 8 HOH A 134 834 73 HOH HOH . L 8 HOH A 135 835 74 HOH HOH . L 8 HOH A 136 836 75 HOH HOH . L 8 HOH A 137 837 76 HOH HOH . L 8 HOH A 138 838 77 HOH HOH . L 8 HOH A 139 839 78 HOH HOH . L 8 HOH A 140 840 80 HOH HOH . L 8 HOH A 141 841 82 HOH HOH . L 8 HOH A 142 842 83 HOH HOH . L 8 HOH A 143 843 85 HOH HOH . L 8 HOH A 144 844 87 HOH HOH . L 8 HOH A 145 845 88 HOH HOH . L 8 HOH A 146 846 89 HOH HOH . L 8 HOH A 147 847 90 HOH HOH . L 8 HOH A 148 848 91 HOH HOH . L 8 HOH A 149 849 92 HOH HOH . L 8 HOH A 150 850 93 HOH HOH . L 8 HOH A 151 851 94 HOH HOH . L 8 HOH A 152 852 95 HOH HOH . L 8 HOH A 153 853 97 HOH HOH . L 8 HOH A 154 854 98 HOH HOH . L 8 HOH A 155 855 99 HOH HOH . L 8 HOH A 156 856 101 HOH HOH . L 8 HOH A 157 857 102 HOH HOH . L 8 HOH A 158 858 103 HOH HOH . L 8 HOH A 159 859 104 HOH HOH . L 8 HOH A 160 860 105 HOH HOH . L 8 HOH A 161 861 106 HOH HOH . L 8 HOH A 162 862 107 HOH HOH . L 8 HOH A 163 863 108 HOH HOH . L 8 HOH A 164 864 109 HOH HOH . L 8 HOH A 165 865 110 HOH HOH . L 8 HOH A 166 866 111 HOH HOH . L 8 HOH A 167 867 112 HOH HOH . L 8 HOH A 168 868 113 HOH HOH . L 8 HOH A 169 869 114 HOH HOH . L 8 HOH A 170 870 116 HOH HOH . L 8 HOH A 171 871 118 HOH HOH . L 8 HOH A 172 872 120 HOH HOH . L 8 HOH A 173 873 121 HOH HOH . L 8 HOH A 174 874 122 HOH HOH . L 8 HOH A 175 875 123 HOH HOH . L 8 HOH A 176 876 124 HOH HOH . L 8 HOH A 177 877 125 HOH HOH . L 8 HOH A 178 878 126 HOH HOH . L 8 HOH A 179 879 128 HOH HOH . L 8 HOH A 180 880 129 HOH HOH . L 8 HOH A 181 881 130 HOH HOH . L 8 HOH A 182 882 131 HOH HOH . L 8 HOH A 183 883 134 HOH HOH . L 8 HOH A 184 884 135 HOH HOH . L 8 HOH A 185 885 136 HOH HOH . L 8 HOH A 186 886 137 HOH HOH . L 8 HOH A 187 887 138 HOH HOH . L 8 HOH A 188 888 142 HOH HOH . L 8 HOH A 189 889 143 HOH HOH . L 8 HOH A 190 890 144 HOH HOH . L 8 HOH A 191 891 146 HOH HOH . L 8 HOH A 192 892 147 HOH HOH . L 8 HOH A 193 893 149 HOH HOH . L 8 HOH A 194 894 150 HOH HOH . L 8 HOH A 195 895 151 HOH HOH . L 8 HOH A 196 896 152 HOH HOH . L 8 HOH A 197 897 153 HOH HOH . L 8 HOH A 198 898 154 HOH HOH . L 8 HOH A 199 899 155 HOH HOH . L 8 HOH A 200 900 156 HOH HOH . L 8 HOH A 201 901 157 HOH HOH . L 8 HOH A 202 902 159 HOH HOH . L 8 HOH A 203 903 160 HOH HOH . L 8 HOH A 204 904 161 HOH HOH . L 8 HOH A 205 905 162 HOH HOH . L 8 HOH A 206 906 164 HOH HOH . L 8 HOH A 207 907 165 HOH HOH . L 8 HOH A 208 908 166 HOH HOH . L 8 HOH A 209 909 167 HOH HOH . L 8 HOH A 210 910 168 HOH HOH . L 8 HOH A 211 911 169 HOH HOH . L 8 HOH A 212 912 170 HOH HOH . L 8 HOH A 213 913 171 HOH HOH . L 8 HOH A 214 914 173 HOH HOH . L 8 HOH A 215 915 174 HOH HOH . L 8 HOH A 216 916 175 HOH HOH . L 8 HOH A 217 917 176 HOH HOH . L 8 HOH A 218 918 178 HOH HOH . L 8 HOH A 219 919 179 HOH HOH . L 8 HOH A 220 920 180 HOH HOH . L 8 HOH A 221 921 181 HOH HOH . L 8 HOH A 222 922 185 HOH HOH . L 8 HOH A 223 923 186 HOH HOH . L 8 HOH A 224 924 187 HOH HOH . L 8 HOH A 225 925 188 HOH HOH . L 8 HOH A 226 926 189 HOH HOH . L 8 HOH A 227 927 192 HOH HOH . L 8 HOH A 228 928 193 HOH HOH . L 8 HOH A 229 929 194 HOH HOH . L 8 HOH A 230 930 195 HOH HOH . L 8 HOH A 231 931 196 HOH HOH . L 8 HOH A 232 932 197 HOH HOH . L 8 HOH A 233 933 198 HOH HOH . L 8 HOH A 234 934 199 HOH HOH . L 8 HOH A 235 935 200 HOH HOH . L 8 HOH A 236 936 201 HOH HOH . L 8 HOH A 237 937 203 HOH HOH . L 8 HOH A 238 938 204 HOH HOH . L 8 HOH A 239 939 205 HOH HOH . L 8 HOH A 240 940 206 HOH HOH . L 8 HOH A 241 941 210 HOH HOH . L 8 HOH A 242 942 211 HOH HOH . L 8 HOH A 243 943 212 HOH HOH . L 8 HOH A 244 944 213 HOH HOH . L 8 HOH A 245 945 214 HOH HOH . L 8 HOH A 246 946 215 HOH HOH . L 8 HOH A 247 947 216 HOH HOH . L 8 HOH A 248 948 217 HOH HOH . L 8 HOH A 249 949 218 HOH HOH . L 8 HOH A 250 950 219 HOH HOH . L 8 HOH A 251 951 220 HOH HOH . L 8 HOH A 252 952 222 HOH HOH . L 8 HOH A 253 953 223 HOH HOH . L 8 HOH A 254 954 224 HOH HOH . L 8 HOH A 255 955 225 HOH HOH . L 8 HOH A 256 956 227 HOH HOH . L 8 HOH A 257 957 228 HOH HOH . L 8 HOH A 258 958 230 HOH HOH . L 8 HOH A 259 959 231 HOH HOH . L 8 HOH A 260 960 232 HOH HOH . L 8 HOH A 261 961 233 HOH HOH . L 8 HOH A 262 962 234 HOH HOH . L 8 HOH A 263 963 235 HOH HOH . L 8 HOH A 264 964 237 HOH HOH . L 8 HOH A 265 965 238 HOH HOH . L 8 HOH A 266 966 239 HOH HOH . L 8 HOH A 267 967 240 HOH HOH . L 8 HOH A 268 968 241 HOH HOH . L 8 HOH A 269 969 243 HOH HOH . L 8 HOH A 270 970 244 HOH HOH . L 8 HOH A 271 971 246 HOH HOH . L 8 HOH A 272 972 247 HOH HOH . L 8 HOH A 273 973 248 HOH HOH . L 8 HOH A 274 974 250 HOH HOH . L 8 HOH A 275 975 251 HOH HOH . L 8 HOH A 276 976 252 HOH HOH . L 8 HOH A 277 977 253 HOH HOH . L 8 HOH A 278 978 254 HOH HOH . L 8 HOH A 279 979 255 HOH HOH . L 8 HOH A 280 980 256 HOH HOH . L 8 HOH A 281 981 257 HOH HOH . L 8 HOH A 282 982 258 HOH HOH . L 8 HOH A 283 983 259 HOH HOH . L 8 HOH A 284 984 262 HOH HOH . L 8 HOH A 285 985 263 HOH HOH . L 8 HOH A 286 986 264 HOH HOH . L 8 HOH A 287 987 265 HOH HOH . L 8 HOH A 288 988 266 HOH HOH . L 8 HOH A 289 989 269 HOH HOH . L 8 HOH A 290 990 270 HOH HOH . L 8 HOH A 291 991 271 HOH HOH . L 8 HOH A 292 992 272 HOH HOH . L 8 HOH A 293 993 273 HOH HOH . L 8 HOH A 294 994 274 HOH HOH . L 8 HOH A 295 995 275 HOH HOH . L 8 HOH A 296 996 277 HOH HOH . L 8 HOH A 297 997 278 HOH HOH . L 8 HOH A 298 998 279 HOH HOH . L 8 HOH A 299 999 280 HOH HOH . L 8 HOH A 300 1000 281 HOH HOH . L 8 HOH A 301 1001 282 HOH HOH . L 8 HOH A 302 1002 285 HOH HOH . L 8 HOH A 303 1003 286 HOH HOH . L 8 HOH A 304 1004 289 HOH HOH . L 8 HOH A 305 1005 290 HOH HOH . L 8 HOH A 306 1006 291 HOH HOH . L 8 HOH A 307 1007 292 HOH HOH . L 8 HOH A 308 1008 296 HOH HOH . L 8 HOH A 309 1009 299 HOH HOH . L 8 HOH A 310 1010 300 HOH HOH . L 8 HOH A 311 1011 301 HOH HOH . L 8 HOH A 312 1012 302 HOH HOH . L 8 HOH A 313 1013 303 HOH HOH . L 8 HOH A 314 1014 305 HOH HOH . L 8 HOH A 315 1015 307 HOH HOH . L 8 HOH A 316 1016 308 HOH HOH . L 8 HOH A 317 1017 309 HOH HOH . L 8 HOH A 318 1018 311 HOH HOH . L 8 HOH A 319 1019 313 HOH HOH . L 8 HOH A 320 1020 317 HOH HOH . L 8 HOH A 321 1021 319 HOH HOH . L 8 HOH A 322 1022 321 HOH HOH . L 8 HOH A 323 1023 322 HOH HOH . L 8 HOH A 324 1024 323 HOH HOH . L 8 HOH A 325 1025 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 14.35 7.808 9.192 0.9 43.63 ? S DMS 602 A 1 HETATM 2 O O DMS . . . C 3 14.08 9.271 9.252 0.9 44.47 ? O DMS 602 A 1 HETATM 3 C C1 DMS . . . C 3 12.926 6.882 8.889 0.9 42.15 ? C1 DMS 602 A 1 HETATM 4 C C2 DMS . . . C 3 15.135 7.404 7.724 0.9 37.57 ? C2 DMS 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #